Wall clock time and date at job start Tue Mar 31 2020 06:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 109.47210 * 2 1 4 4 O 1.42897 * 109.47641 * 239.99821 * 2 1 3 5 5 C 1.42904 * 114.00026 * 89.99935 * 4 2 1 6 6 C 1.52999 * 109.46957 * 180.02562 * 5 4 2 7 7 C 1.50711 * 109.46882 * 179.97438 * 6 5 4 8 8 H 1.07996 * 119.99837 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99580 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00571 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99566 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47461 * 59.99764 * 11 9 7 13 13 H 1.48505 * 109.47260 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47358 * 299.99789 * 11 9 7 15 15 C 1.50706 * 109.47199 * 119.99531 * 2 1 3 16 16 C 1.35227 * 126.66056 * 265.00199 * 15 2 1 17 17 C 1.42285 * 103.93515 * 180.02562 * 16 15 2 18 18 C 1.48436 * 126.94114 * 179.97438 * 17 16 15 19 19 C 1.39317 * 120.12105 * 180.02562 * 18 17 16 20 20 C 1.38018 * 119.88084 * 179.97438 * 19 18 17 21 21 C 1.38330 * 120.11793 * 359.97438 * 20 19 18 22 22 C 1.38314 * 120.23867 * 0.26094 * 21 20 19 23 23 C 1.38027 * 120.12110 * 359.48381 * 22 21 20 24 24 N 1.30996 * 106.12613 * 0.24487 * 17 16 15 25 25 O 1.20916 * 111.42062 * 359.56802 * 24 17 16 26 26 H 1.09003 * 109.47469 * 60.00602 * 1 2 3 27 27 H 1.09006 * 109.47210 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47585 * 299.99974 * 1 2 3 29 29 H 1.09003 * 109.46722 * 300.00091 * 5 4 2 30 30 H 1.08995 * 109.47354 * 60.00181 * 5 4 2 31 31 H 1.08996 * 109.46962 * 299.99776 * 6 5 4 32 32 H 1.08999 * 109.47569 * 60.00107 * 6 5 4 33 33 H 0.96999 * 120.00525 * 180.02562 * 10 9 7 34 34 H 1.08000 * 128.03698 * 0.05748 * 16 15 2 35 35 H 1.08004 * 120.06019 * 359.95778 * 19 18 17 36 36 H 1.07997 * 119.94500 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.87753 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.94412 * 179.74847 * 22 21 20 39 39 H 1.07993 * 120.06093 * 180.26031 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7081 -0.6409 -3.4791 7 6 2.9118 0.2624 -4.6682 8 1 2.6998 1.3182 -4.5868 9 6 3.3689 -0.2593 -5.8597 10 7 3.6276 -1.5449 -5.9586 11 14 3.6221 0.8604 -7.3333 12 1 4.6192 1.9073 -6.9941 13 1 4.1162 0.0611 -8.4833 14 1 2.3329 1.5030 -7.6942 15 6 2.0323 -0.7103 1.2306 16 6 2.3905 -0.1392 2.4028 17 6 2.7834 -1.2400 3.2143 18 6 3.2728 -1.1861 4.6146 19 6 3.6214 -2.3599 5.2790 20 6 4.0764 -2.3040 6.5809 21 6 4.1870 -1.0853 7.2257 22 6 3.8377 0.0827 6.5724 23 6 3.3865 0.0388 5.2687 24 7 2.6317 -2.3101 2.4741 25 8 2.2113 -2.0310 1.3753 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.2538 0.6546 -2.5588 30 1 2.9319 0.9513 -2.0450 31 1 3.6542 -1.1128 -3.2145 32 1 1.9760 -1.4090 -3.7281 33 1 3.9495 -1.9118 -6.7968 34 1 2.3803 0.9089 2.6629 35 1 3.5356 -3.3120 4.7764 36 1 4.3473 -3.2133 7.0968 37 1 4.5431 -1.0461 8.2446 38 1 3.9221 1.0313 7.0818 39 1 3.1180 0.9517 4.7581 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205649365.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:31 Heat of formation + Delta-G solvation = 27.181358 kcal Electronic energy + Delta-G solvation = -21080.206109 eV Core-core repulsion = 17762.851777 eV Total energy + Delta-G solvation = -3317.354331 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.85722 -39.35240 -37.99058 -34.54828 -33.73886 -32.73413 -31.29756 -30.56994 -30.04692 -29.29626 -24.92729 -24.34861 -23.81309 -22.76441 -22.09713 -20.93757 -20.09186 -17.83434 -17.46094 -16.74815 -16.52515 -15.94504 -15.63969 -15.21922 -14.90668 -14.70397 -14.41121 -13.86400 -13.67163 -13.44244 -13.27301 -12.95897 -12.63240 -12.38278 -11.99856 -11.83612 -11.63360 -11.40287 -11.15741 -11.04895 -10.89673 -10.78078 -10.52467 -10.45005 -9.65166 -9.43425 -9.26574 -9.24851 -9.05503 -8.73079 -8.38172 -6.04654 -4.09125 0.63268 1.09034 1.51474 2.36812 3.08477 3.30886 3.35490 3.37066 3.60599 3.78717 3.90816 4.37067 4.48372 4.65278 4.74455 4.79359 4.96792 5.02954 5.09666 5.12676 5.20582 5.29088 5.31251 5.43868 5.55844 5.67949 5.72930 5.78023 5.86110 6.10063 6.14991 6.16687 6.19056 6.24489 6.24839 6.62307 6.80287 7.42467 7.73538 7.75336 8.03345 8.24517 8.31504 8.97184 9.54726 11.06831 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.031810 B = 0.002543 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.020659 B =11007.818243 C =11135.388527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.162 3.838 3 H 0.091 0.909 4 O -0.375 6.375 5 C 0.067 3.933 6 C 0.025 3.975 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.060 3.940 10 N -0.890 5.890 11 Si 0.897 3.103 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.276 1.276 15 C -0.001 4.001 16 C -0.227 4.227 17 C 0.049 3.951 18 C -0.014 4.014 19 C -0.094 4.094 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.096 4.096 24 N -0.358 5.358 25 O 0.127 5.873 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.263 0.737 34 H 0.173 0.827 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.843 4.354 25.002 25.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.102 3.898 3 H 0.109 0.891 4 O -0.295 6.295 5 C -0.008 4.008 6 C -0.012 4.012 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.143 4.143 10 N -0.528 5.528 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.201 1.201 15 C -0.065 4.065 16 C -0.248 4.248 17 C -0.107 4.107 18 C -0.015 4.015 19 C -0.113 4.113 20 C -0.138 4.138 21 C -0.133 4.133 22 C -0.138 4.138 23 C -0.115 4.115 24 N -0.058 5.058 25 O 0.057 5.943 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.191 0.809 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.536 2.677 25.040 25.310 hybrid contribution 0.110 1.661 -0.784 1.840 sum -2.426 4.338 24.256 24.760 Atomic orbital electron populations 1.22303 0.94042 1.03779 1.02795 1.20412 0.93957 0.93874 0.81541 0.89146 1.88091 1.85938 1.35956 1.19500 1.23047 0.98452 0.93622 0.85700 1.19077 0.97261 0.95610 0.89247 1.20985 1.45333 0.94479 0.95640 0.92554 1.24994 0.95315 0.95093 0.98857 1.69966 1.44732 1.11672 1.26434 0.86584 0.78575 0.80483 0.81909 1.20175 1.21179 1.20145 1.24487 1.00353 0.83768 0.97852 1.22307 1.08424 1.01118 0.92977 1.21909 1.03559 0.89379 0.95848 1.17732 1.00497 0.94214 0.89061 1.21274 0.97389 0.97959 0.94673 1.21121 0.99858 0.98202 0.94616 1.21274 0.99347 0.92590 1.00047 1.21079 0.99605 0.98636 0.94512 1.21138 0.98868 0.96708 0.94829 1.74143 1.15420 1.23527 0.92729 1.84899 1.59720 1.23947 1.25756 0.90628 0.91149 0.91635 0.94089 0.94279 0.95639 0.95524 0.92720 0.80938 0.85309 0.85567 0.85791 0.85488 0.85439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 9.51 37.15 0.35 -1.71 16 2 C 0.16 2.32 3.21 -27.88 -0.09 2.23 16 3 H 0.09 1.10 7.79 -51.93 -0.40 0.69 16 4 O -0.38 -7.29 9.97 -38.55 -0.38 -7.68 16 5 C 0.07 1.39 5.69 37.16 0.21 1.60 16 6 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 7 C -0.53 -14.72 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 11 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 C 0.00 -0.01 6.36 -35.38 -0.22 -0.24 16 16 C -0.23 -2.81 10.45 -39.10 -0.41 -3.22 16 17 C 0.05 0.69 7.06 -82.47 -0.58 0.10 16 18 C -0.01 -0.17 5.88 -104.89 -0.62 -0.79 16 19 C -0.09 -1.04 9.70 -39.26 -0.38 -1.42 16 20 C -0.12 -1.05 10.03 -39.63 -0.40 -1.45 16 21 C -0.11 -0.88 10.04 -39.52 -0.40 -1.27 16 22 C -0.12 -0.94 10.03 -39.63 -0.40 -1.34 16 23 C -0.10 -0.90 9.60 -39.26 -0.38 -1.28 16 24 N -0.36 -5.82 11.82 33.32 0.39 -5.43 16 25 O 0.13 2.16 11.17 13.80 0.15 2.31 16 26 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.79 7.87 -51.93 -0.41 0.38 16 30 H 0.04 0.77 8.08 -51.93 -0.42 0.35 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.17 1.52 7.58 -52.49 -0.40 1.12 16 35 H 0.13 1.47 7.90 -52.48 -0.41 1.05 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.96 7.23 -52.49 -0.38 0.58 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -32.30 341.68 -8.17 -40.47 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -5.33 Total: -3.38 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -3.87 Total: -21.69 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 1.13 Total: -31.51 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.23 Total: -5.37 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.30 -8.17 -40.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649365.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.651 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds