Wall clock time and date at job start Tue Mar 31 2020 06:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 109.47210 * 2 1 4 4 O 1.42897 * 109.47641 * 239.99821 * 2 1 3 5 5 C 1.42904 * 114.00026 * 89.99935 * 4 2 1 6 6 C 1.52999 * 109.46957 * 180.02562 * 5 4 2 7 7 C 1.50711 * 109.46882 * 179.97438 * 6 5 4 8 8 H 1.07996 * 119.99837 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99580 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00571 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99566 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47461 * 59.99764 * 11 9 7 13 13 H 1.48505 * 109.47260 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47358 * 299.99789 * 11 9 7 15 15 C 1.50706 * 109.47199 * 119.99531 * 2 1 3 16 16 C 1.35227 * 126.66056 * 265.00199 * 15 2 1 17 17 C 1.42285 * 103.93515 * 180.02562 * 16 15 2 18 18 C 1.48436 * 126.94114 * 179.97438 * 17 16 15 19 19 C 1.39317 * 120.12105 * 180.02562 * 18 17 16 20 20 C 1.38018 * 119.88084 * 179.97438 * 19 18 17 21 21 C 1.38330 * 120.11793 * 359.97438 * 20 19 18 22 22 C 1.38314 * 120.23867 * 0.26094 * 21 20 19 23 23 C 1.38027 * 120.12110 * 359.48381 * 22 21 20 24 24 N 1.30996 * 106.12613 * 0.24487 * 17 16 15 25 25 O 1.20916 * 111.42062 * 359.56802 * 24 17 16 26 26 H 1.09003 * 109.47469 * 60.00602 * 1 2 3 27 27 H 1.09006 * 109.47210 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47585 * 299.99974 * 1 2 3 29 29 H 1.09003 * 109.46722 * 300.00091 * 5 4 2 30 30 H 1.08995 * 109.47354 * 60.00181 * 5 4 2 31 31 H 1.08996 * 109.46962 * 299.99776 * 6 5 4 32 32 H 1.08999 * 109.47569 * 60.00107 * 6 5 4 33 33 H 0.96999 * 120.00525 * 180.02562 * 10 9 7 34 34 H 1.08000 * 128.03698 * 0.05748 * 16 15 2 35 35 H 1.08004 * 120.06019 * 359.95778 * 19 18 17 36 36 H 1.07997 * 119.94500 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.87753 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.94412 * 179.74847 * 22 21 20 39 39 H 1.07993 * 120.06093 * 180.26031 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7081 -0.6409 -3.4791 7 6 2.9118 0.2624 -4.6682 8 1 2.6998 1.3182 -4.5868 9 6 3.3689 -0.2593 -5.8597 10 7 3.6276 -1.5449 -5.9586 11 14 3.6221 0.8604 -7.3333 12 1 4.6192 1.9073 -6.9941 13 1 4.1162 0.0611 -8.4833 14 1 2.3329 1.5030 -7.6942 15 6 2.0323 -0.7103 1.2306 16 6 2.3905 -0.1392 2.4028 17 6 2.7834 -1.2400 3.2143 18 6 3.2728 -1.1861 4.6146 19 6 3.6214 -2.3599 5.2790 20 6 4.0764 -2.3040 6.5809 21 6 4.1870 -1.0853 7.2257 22 6 3.8377 0.0827 6.5724 23 6 3.3865 0.0388 5.2687 24 7 2.6317 -2.3101 2.4741 25 8 2.2113 -2.0310 1.3753 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.2538 0.6546 -2.5588 30 1 2.9319 0.9513 -2.0450 31 1 3.6542 -1.1128 -3.2145 32 1 1.9760 -1.4090 -3.7281 33 1 3.9495 -1.9118 -6.7968 34 1 2.3803 0.9089 2.6629 35 1 3.5356 -3.3120 4.7764 36 1 4.3473 -3.2133 7.0968 37 1 4.5431 -1.0461 8.2446 38 1 3.9221 1.0313 7.0818 39 1 3.1180 0.9517 4.7581 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205649365.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:30 Heat of formation + Delta-G solvation = 8.950693 kcal Electronic energy + Delta-G solvation = -21080.996649 eV Core-core repulsion = 17762.851777 eV Total energy + Delta-G solvation = -3318.144872 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.94742 -40.04609 -39.39236 -35.66111 -35.42960 -34.23812 -32.07108 -31.77797 -31.26229 -30.58959 -26.79341 -25.28550 -24.90961 -23.69038 -22.99633 -22.75258 -21.04271 -19.04027 -18.62580 -18.37601 -17.49395 -17.17945 -16.85386 -16.49458 -16.42311 -15.97111 -15.46890 -14.77946 -14.43738 -14.40445 -14.27284 -14.25252 -14.04993 -14.00557 -13.17669 -13.04832 -12.86954 -12.75629 -12.46813 -12.32619 -12.26214 -12.05622 -11.87201 -11.84021 -11.48384 -11.36041 -10.78947 -10.55939 -10.36020 -9.93833 -9.55310 -8.22047 -6.35652 -0.18826 0.41963 0.46383 1.42385 1.46037 1.46629 1.54491 2.03723 2.36639 2.63543 2.88767 2.97404 3.12059 3.42689 3.87699 3.98437 4.04165 4.06897 4.11206 4.17525 4.26343 4.37122 4.43959 4.48222 4.51602 4.66324 4.73255 4.82026 4.88877 4.94940 5.01138 5.08286 5.23272 5.38938 5.48301 5.50533 5.53596 5.59051 5.73487 5.98297 6.10494 6.34571 6.81193 7.15836 7.34512 8.90950 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.031810 B = 0.002543 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.020659 B =11007.818243 C =11135.388527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.157 3.843 3 H 0.122 0.878 4 O -0.406 6.406 5 C 0.085 3.915 6 C 0.025 3.975 7 C -0.543 4.543 8 H 0.074 0.926 9 C -0.003 4.003 10 N -0.935 5.935 11 Si 0.975 3.025 12 H -0.263 1.263 13 H -0.286 1.286 14 H -0.262 1.262 15 C -0.020 4.020 16 C -0.208 4.208 17 C 0.051 3.949 18 C -0.047 4.047 19 C -0.116 4.116 20 C -0.126 4.126 21 C -0.107 4.107 22 C -0.119 4.119 23 C -0.096 4.096 24 N -0.393 5.393 25 O 0.086 5.914 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.055 0.945 31 H -0.012 1.012 32 H -0.007 1.007 33 H 0.265 0.735 34 H 0.214 0.786 35 H 0.110 0.890 36 H 0.145 0.855 37 H 0.156 0.844 38 H 0.160 0.840 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.876 7.981 26.958 28.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.098 3.902 3 H 0.139 0.861 4 O -0.327 6.327 5 C 0.009 3.991 6 C -0.012 4.012 7 C -0.580 4.580 8 H 0.092 0.908 9 C -0.201 4.201 10 N -0.575 5.575 11 Si 0.799 3.201 12 H -0.188 1.188 13 H -0.212 1.212 14 H -0.186 1.186 15 C -0.084 4.084 16 C -0.229 4.229 17 C -0.105 4.105 18 C -0.048 4.048 19 C -0.135 4.135 20 C -0.143 4.143 21 C -0.126 4.126 22 C -0.136 4.136 23 C -0.116 4.116 24 N -0.098 5.098 25 O 0.021 5.979 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.007 0.993 32 H 0.011 0.989 33 H 0.073 0.927 34 H 0.231 0.769 35 H 0.128 0.872 36 H 0.162 0.838 37 H 0.173 0.827 38 H 0.177 0.823 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.596 6.321 26.987 27.838 hybrid contribution 0.152 0.492 -1.172 1.280 sum -2.444 6.814 25.815 26.811 Atomic orbital electron populations 1.22288 0.92292 1.03262 1.04556 1.20802 0.95342 0.94764 0.79259 0.86087 1.88028 1.86681 1.37183 1.20767 1.22620 0.99485 0.92478 0.84489 1.18956 0.94731 0.95493 0.92068 1.21457 1.44948 0.95423 0.96215 0.90814 1.26091 0.94804 0.96675 1.02564 1.70135 1.45874 1.14050 1.27422 0.85348 0.79213 0.78269 0.77288 1.18784 1.21172 1.18608 1.24779 1.01405 0.83334 0.98861 1.22765 1.06259 1.02474 0.91378 1.22480 1.02027 0.89299 0.96738 1.17935 1.02763 0.95683 0.88445 1.21324 0.98866 0.97338 0.96001 1.21386 0.99371 0.99883 0.93692 1.21714 0.97666 0.91912 1.01279 1.21512 0.98139 1.00116 0.93865 1.21435 0.98255 0.96285 0.95575 1.74138 1.17457 1.25120 0.93123 1.84848 1.61121 1.25440 1.26457 0.90177 0.92874 0.88428 0.92122 0.92721 0.99342 0.98869 0.92650 0.76870 0.87160 0.83752 0.82675 0.82256 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.77 9.51 71.98 0.68 -3.09 16 2 C 0.16 4.34 3.21 29.85 0.10 4.43 16 3 H 0.12 2.58 7.79 -2.38 -0.02 2.56 16 4 O -0.41 -16.12 9.97 -145.80 -1.45 -17.57 16 5 C 0.08 3.50 5.69 71.98 0.41 3.91 16 6 C 0.02 1.36 5.34 29.85 0.16 1.52 16 7 C -0.54 -30.61 9.11 25.60 0.23 -30.38 16 8 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 9 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 10 N -0.94 -58.18 13.29 21.44 0.28 -57.90 16 11 Si 0.98 43.67 29.54 68.60 2.03 45.69 16 12 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 13 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 15 C -0.02 -0.60 6.36 24.99 0.16 -0.44 16 16 C -0.21 -4.85 10.45 22.58 0.24 -4.61 16 17 C 0.05 1.43 7.06 42.99 0.30 1.74 16 18 C -0.05 -1.10 5.88 -20.04 -0.12 -1.22 16 19 C -0.12 -2.63 9.70 22.48 0.22 -2.41 16 20 C -0.13 -2.02 10.03 22.24 0.22 -1.80 16 21 C -0.11 -1.30 10.04 22.31 0.22 -1.07 16 22 C -0.12 -1.42 10.03 22.24 0.22 -1.19 16 23 C -0.10 -1.56 9.60 22.48 0.22 -1.34 16 24 N -0.39 -13.59 11.82 -49.43 -0.58 -14.17 16 25 O 0.09 3.12 11.17 74.61 0.83 3.95 16 26 H 0.08 1.74 7.87 -2.39 -0.02 1.72 16 27 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 2.25 7.87 -2.39 -0.02 2.23 16 30 H 0.05 2.07 8.08 -2.39 -0.02 2.05 16 31 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 32 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 33 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 34 H 0.21 2.90 7.58 -2.91 -0.02 2.88 16 35 H 0.11 2.78 7.90 -2.91 -0.02 2.75 16 36 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 38 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 39 H 0.15 1.66 7.23 -2.91 -0.02 1.64 16 Total: -1.00 -74.94 341.68 5.87 -69.07 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 1.04 Total: 6.60 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 3.73 Total: -35.67 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -0.30 Total: -72.07 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.62 Total: -13.62 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -74.94 5.87 -69.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649365.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.020 kcal (2) G-P(sol) polarization free energy of solvation -74.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds