Wall clock time and date at job start Tue Mar 31 2020 06:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 119.99384 * 2 1 4 4 H 1.08000 * 120.00304 * 322.03551 * 3 2 1 5 5 C 1.38820 * 119.99772 * 142.03667 * 3 2 1 6 6 N 1.31617 * 119.99947 * 157.01979 * 5 3 2 7 7 Si 1.86801 * 119.99881 * 337.01986 * 5 3 2 8 8 H 1.48505 * 109.46813 * 95.68165 * 7 5 3 9 9 H 1.48499 * 109.47255 * 215.68022 * 7 5 3 10 10 H 1.48504 * 109.47258 * 335.68317 * 7 5 3 11 11 C 1.46494 * 120.00494 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47308 * 89.99760 * 11 2 1 13 13 C 1.52999 * 109.47188 * 180.02562 * 12 11 2 14 14 C 1.50695 * 109.47313 * 180.02562 * 13 12 11 15 15 C 1.38256 * 120.00488 * 270.21526 * 14 13 12 16 16 C 1.38211 * 120.00209 * 180.25207 * 15 14 13 17 17 C 1.38247 * 120.00136 * 359.51175 * 16 15 14 18 18 C 1.38219 * 120.00100 * 0.27522 * 17 16 15 19 19 C 1.50700 * 120.00376 * 179.97438 * 18 17 16 20 20 F 1.39906 * 109.46810 * 0.02562 * 19 18 17 21 21 F 1.39900 * 109.46752 * 120.00086 * 19 18 17 22 22 F 1.39891 * 109.47520 * 240.00309 * 19 18 17 23 23 C 1.38211 * 119.99858 * 90.00047 * 14 13 12 24 24 H 1.08998 * 109.47127 * 265.64618 * 1 2 3 25 25 H 1.08993 * 109.47132 * 25.65014 * 1 2 3 26 26 H 1.09004 * 109.46624 * 145.65085 * 1 2 3 27 27 H 0.97002 * 119.99629 * 180.02562 * 6 5 3 28 28 H 1.09008 * 109.46828 * 329.99966 * 11 2 1 29 29 H 1.09005 * 109.47400 * 210.00371 * 11 2 1 30 30 H 1.08998 * 109.46590 * 60.00594 * 12 11 2 31 31 H 1.09000 * 109.47380 * 300.00118 * 12 11 2 32 32 H 1.09008 * 109.46904 * 60.00233 * 13 12 11 33 33 H 1.09005 * 109.47444 * 300.00565 * 13 12 11 34 34 H 1.08009 * 119.99785 * 0.04173 * 15 14 13 35 35 H 1.08004 * 119.99841 * 179.78956 * 16 15 14 36 36 H 1.07998 * 120.00589 * 180.25583 * 17 16 15 37 37 H 1.08004 * 120.00103 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 1.7810 2.0223 -0.5754 5 6 3.3175 1.3133 0.7396 6 7 4.2043 2.2306 0.4166 7 14 3.6304 0.1825 2.1932 8 1 4.4681 -0.9636 1.7573 9 1 4.3367 0.9338 3.2617 10 1 2.3350 -0.3217 2.7159 11 6 2.1976 -1.2686 -0.0006 12 6 2.4526 -1.7097 -1.4432 13 6 3.2172 -3.0349 -1.4438 14 6 3.4689 -3.4691 -2.8647 15 6 2.5452 -4.2629 -3.5191 16 6 2.7786 -4.6653 -4.8205 17 6 3.9309 -4.2658 -5.4715 18 6 4.8524 -3.4686 -4.8189 19 6 6.1088 -3.0336 -5.5283 20 9 6.1168 -3.5571 -6.8257 21 9 6.1498 -1.6365 -5.5894 22 9 7.2256 -3.5028 -4.8287 23 6 4.6211 -3.0700 -3.5154 24 1 -0.3633 -0.0780 1.0247 25 1 -0.3633 0.9263 -0.4448 26 1 -0.3633 -0.8485 -0.5799 27 1 5.0205 2.3193 0.9332 28 1 1.6085 -2.0286 0.5130 29 1 3.1500 -1.1385 0.5134 30 1 3.0417 -0.9498 -1.9566 31 1 1.5002 -1.8399 -1.9571 32 1 2.6277 -3.7947 -0.9304 33 1 4.1696 -2.9053 -0.9297 34 1 1.6428 -4.5713 -3.0120 35 1 2.0586 -5.2882 -5.3305 36 1 4.1114 -4.5769 -6.4899 37 1 5.3413 -2.4474 -3.0053 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207845689.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:30 Heat of formation + Delta-G solvation = -113.909940 kcal Electronic energy + Delta-G solvation = -22507.549452 eV Core-core repulsion = 18642.220203 eV Total energy + Delta-G solvation = -3865.329250 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.20530 -47.74684 -47.63751 -39.63310 -36.39711 -34.00751 -31.94310 -31.59678 -30.11040 -26.50728 -26.11405 -25.60227 -22.73175 -22.20751 -20.90951 -20.54909 -18.51463 -18.41810 -18.10184 -16.67533 -16.38110 -15.67093 -15.21608 -14.61060 -14.57397 -14.47983 -14.14472 -14.10713 -13.89392 -13.82015 -13.63316 -13.51335 -13.18786 -12.91383 -12.69792 -12.61249 -12.07175 -11.82323 -11.47780 -11.36811 -11.25830 -10.87264 -10.79772 -10.42828 -10.32785 -9.75164 -9.52636 -9.30053 -8.86883 -8.50400 -6.79690 -5.99786 -3.40354 0.84673 1.16248 2.60386 3.28857 3.38683 3.45829 3.51683 3.65616 3.96059 4.37859 4.52193 4.66301 4.71645 4.89935 5.03644 5.15034 5.23529 5.36040 5.38836 5.60364 5.71836 5.82360 5.98470 6.03585 6.09096 6.14602 6.27853 6.30547 6.35530 6.45358 6.61965 6.69013 6.70843 6.84522 7.03076 8.06474 8.38347 8.99758 9.71622 10.13335 11.15965 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.018447 B = 0.004349 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.458528 B = 6436.401747 C = 7195.212163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.614 5.614 3 C -0.270 4.270 4 H 0.077 0.923 5 C 0.036 3.964 6 N -0.899 5.899 7 Si 0.877 3.123 8 H -0.285 1.285 9 H -0.301 1.301 10 H -0.271 1.271 11 C 0.139 3.861 12 C -0.128 4.128 13 C -0.086 4.086 14 C -0.066 4.066 15 C -0.088 4.088 16 C -0.120 4.120 17 C -0.086 4.086 18 C -0.181 4.181 19 C 0.508 3.492 20 F -0.181 7.181 21 F -0.173 7.173 22 F -0.178 7.178 23 C -0.066 4.066 24 H 0.005 0.995 25 H 0.044 0.956 26 H 0.026 0.974 27 H 0.263 0.737 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.406 -16.255 -10.950 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.338 5.338 3 C -0.399 4.399 4 H 0.095 0.905 5 C -0.165 4.165 6 N -0.540 5.540 7 Si 0.707 3.293 8 H -0.213 1.213 9 H -0.229 1.229 10 H -0.195 1.195 11 C 0.013 3.987 12 C -0.168 4.168 13 C -0.124 4.124 14 C -0.067 4.067 15 C -0.106 4.106 16 C -0.138 4.138 17 C -0.104 4.104 18 C -0.182 4.182 19 C 0.454 3.546 20 F -0.162 7.162 21 F -0.155 7.155 22 F -0.159 7.159 23 C -0.084 4.084 24 H 0.024 0.976 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.249 -16.115 -10.915 19.466 hybrid contribution 0.580 -0.427 0.647 0.968 sum 0.331 -16.542 -10.268 19.473 Atomic orbital electron populations 1.21067 0.84680 0.98986 0.97288 1.44058 1.00773 1.02096 1.86837 1.18796 1.06096 0.90858 1.24123 0.90523 1.25477 0.96820 0.96444 0.97716 1.69888 1.08437 1.36217 1.39426 0.86929 0.77899 0.80034 0.84429 1.21311 1.22893 1.19538 1.21157 0.96249 0.87613 0.93670 1.22160 0.99334 0.94362 1.00913 1.20747 1.01967 0.98817 0.90872 1.20049 0.93250 0.95997 0.97356 1.21320 0.98673 0.96006 0.94563 1.21103 0.97082 1.00635 0.95008 1.20920 0.93432 0.96043 1.00051 1.19936 0.95650 1.05863 0.96778 1.18337 0.84349 0.75241 0.76676 1.93144 1.96770 1.86610 1.39702 1.93251 1.96762 1.29247 1.96210 1.93211 1.55494 1.88406 1.78817 1.20886 0.97721 0.97351 0.92479 0.97649 0.93712 0.95551 0.92714 0.94471 0.92916 0.91004 0.92699 0.90937 0.90736 0.85130 0.85058 0.84829 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.51 10.70 59.85 0.64 3.15 16 2 N -0.61 -14.69 2.47 -181.12 -0.45 -15.13 16 3 C -0.27 -7.60 9.88 -15.06 -0.15 -7.75 16 4 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 5 C 0.04 1.04 5.29 -17.43 -0.09 0.95 16 6 N -0.90 -27.42 13.97 55.49 0.78 -26.65 16 7 Si 0.88 22.15 25.10 -169.99 -4.27 17.88 16 8 H -0.29 -6.87 6.68 56.52 0.38 -6.50 16 9 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 C 0.14 2.91 4.53 -4.05 -0.02 2.89 16 12 C -0.13 -2.28 5.52 -26.73 -0.15 -2.43 16 13 C -0.09 -1.23 5.34 -27.89 -0.15 -1.37 16 14 C -0.07 -0.87 5.13 -104.63 -0.54 -1.41 16 15 C -0.09 -0.96 9.70 -39.58 -0.38 -1.35 16 16 C -0.12 -1.18 10.05 -39.59 -0.40 -1.57 16 17 C -0.09 -0.93 9.43 -39.58 -0.37 -1.30 16 18 C -0.18 -2.29 5.37 -104.62 -0.56 -2.85 16 19 C 0.51 6.49 3.32 36.01 0.12 6.61 16 20 F -0.18 -2.14 15.97 2.25 0.04 -2.11 16 21 F -0.17 -2.48 17.24 2.25 0.04 -2.44 16 22 F -0.18 -2.34 17.24 2.25 0.04 -2.30 16 23 C -0.07 -0.91 9.25 -39.58 -0.37 -1.27 16 24 H 0.01 0.11 8.14 -51.93 -0.42 -0.32 16 25 H 0.04 0.88 8.00 -51.93 -0.42 0.47 16 26 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.04 0.69 8.07 -51.92 -0.42 0.27 16 29 H 0.05 1.22 3.38 -51.93 -0.18 1.04 16 30 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.89 8.09 -51.92 -0.42 0.47 16 33 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 34 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 35 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.13 1.17 7.16 -52.49 -0.38 0.80 16 37 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -30.76 322.26 -6.15 -36.91 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -4.77 Total: -3.30 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -2.42 Total: -7.71 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.33 Total: -41.78 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 0.11 Total: -6.85 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.27 Total: 17.88 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.76 -6.15 -36.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207845689.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.001 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds