Wall clock time and date at job start Tue Mar 31 2020 06:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 119.99384 * 2 1 4 4 H 1.08000 * 120.00304 * 322.03551 * 3 2 1 5 5 C 1.38820 * 119.99772 * 142.03667 * 3 2 1 6 6 N 1.31617 * 119.99947 * 157.01979 * 5 3 2 7 7 Si 1.86801 * 119.99881 * 337.01986 * 5 3 2 8 8 H 1.48505 * 109.46813 * 95.68165 * 7 5 3 9 9 H 1.48499 * 109.47255 * 215.68022 * 7 5 3 10 10 H 1.48504 * 109.47258 * 335.68317 * 7 5 3 11 11 C 1.46494 * 120.00494 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47308 * 89.99760 * 11 2 1 13 13 C 1.52999 * 109.47188 * 180.02562 * 12 11 2 14 14 C 1.50695 * 109.47313 * 180.02562 * 13 12 11 15 15 C 1.38256 * 120.00488 * 270.21526 * 14 13 12 16 16 C 1.38211 * 120.00209 * 180.25207 * 15 14 13 17 17 C 1.38247 * 120.00136 * 359.51175 * 16 15 14 18 18 C 1.38219 * 120.00100 * 0.27522 * 17 16 15 19 19 C 1.50700 * 120.00376 * 179.97438 * 18 17 16 20 20 F 1.39906 * 109.46810 * 0.02562 * 19 18 17 21 21 F 1.39900 * 109.46752 * 120.00086 * 19 18 17 22 22 F 1.39891 * 109.47520 * 240.00309 * 19 18 17 23 23 C 1.38211 * 119.99858 * 90.00047 * 14 13 12 24 24 H 1.08998 * 109.47127 * 265.64618 * 1 2 3 25 25 H 1.08993 * 109.47132 * 25.65014 * 1 2 3 26 26 H 1.09004 * 109.46624 * 145.65085 * 1 2 3 27 27 H 0.97002 * 119.99629 * 180.02562 * 6 5 3 28 28 H 1.09008 * 109.46828 * 329.99966 * 11 2 1 29 29 H 1.09005 * 109.47400 * 210.00371 * 11 2 1 30 30 H 1.08998 * 109.46590 * 60.00594 * 12 11 2 31 31 H 1.09000 * 109.47380 * 300.00118 * 12 11 2 32 32 H 1.09008 * 109.46904 * 60.00233 * 13 12 11 33 33 H 1.09005 * 109.47444 * 300.00565 * 13 12 11 34 34 H 1.08009 * 119.99785 * 0.04173 * 15 14 13 35 35 H 1.08004 * 119.99841 * 179.78956 * 16 15 14 36 36 H 1.07998 * 120.00589 * 180.25583 * 17 16 15 37 37 H 1.08004 * 120.00103 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 1.7810 2.0223 -0.5754 5 6 3.3175 1.3133 0.7396 6 7 4.2043 2.2306 0.4166 7 14 3.6304 0.1825 2.1932 8 1 4.4681 -0.9636 1.7573 9 1 4.3367 0.9338 3.2617 10 1 2.3350 -0.3217 2.7159 11 6 2.1976 -1.2686 -0.0006 12 6 2.4526 -1.7097 -1.4432 13 6 3.2172 -3.0349 -1.4438 14 6 3.4689 -3.4691 -2.8647 15 6 2.5452 -4.2629 -3.5191 16 6 2.7786 -4.6653 -4.8205 17 6 3.9309 -4.2658 -5.4715 18 6 4.8524 -3.4686 -4.8189 19 6 6.1088 -3.0336 -5.5283 20 9 6.1168 -3.5571 -6.8257 21 9 6.1498 -1.6365 -5.5894 22 9 7.2256 -3.5028 -4.8287 23 6 4.6211 -3.0700 -3.5154 24 1 -0.3633 -0.0780 1.0247 25 1 -0.3633 0.9263 -0.4448 26 1 -0.3633 -0.8485 -0.5799 27 1 5.0205 2.3193 0.9332 28 1 1.6085 -2.0286 0.5130 29 1 3.1500 -1.1385 0.5134 30 1 3.0417 -0.9498 -1.9566 31 1 1.5002 -1.8399 -1.9571 32 1 2.6277 -3.7947 -0.9304 33 1 4.1696 -2.9053 -0.9297 34 1 1.6428 -4.5713 -3.0120 35 1 2.0586 -5.2882 -5.3305 36 1 4.1114 -4.5769 -6.4899 37 1 5.3413 -2.4474 -3.0053 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207845689.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:30 Heat of formation + Delta-G solvation = -130.305836 kcal Electronic energy + Delta-G solvation = -22508.260432 eV Core-core repulsion = 18642.220203 eV Total energy + Delta-G solvation = -3866.040229 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.23902 -48.75400 -48.71420 -40.54305 -38.09394 -35.31629 -33.70197 -32.79911 -31.37223 -28.15909 -27.26507 -27.03502 -24.05713 -23.26362 -22.48968 -21.83595 -19.56156 -19.43421 -19.13520 -18.65619 -17.35772 -17.22971 -16.48818 -15.96616 -15.63651 -15.55937 -15.40536 -15.15793 -15.15045 -15.04684 -14.93939 -14.87578 -14.62698 -14.20436 -14.00644 -13.83383 -13.57533 -13.30520 -12.85210 -12.71058 -12.58237 -12.44420 -12.18917 -12.03890 -11.84303 -11.69297 -11.29800 -10.62410 -10.17078 -9.82361 -8.73772 -8.21443 -5.58819 -0.04513 0.27162 1.28725 1.40160 1.51846 1.60694 2.41262 2.49326 2.67379 2.97139 3.03648 3.35489 3.47218 3.74663 3.85458 4.03820 4.15482 4.29702 4.38159 4.46964 4.55637 4.60552 4.72729 4.79191 4.83064 4.89745 5.00699 5.10172 5.12995 5.18610 5.25790 5.34150 5.50708 5.58838 5.84308 5.94485 6.15055 7.00389 7.64284 8.05494 8.98668 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.018447 B = 0.004349 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.458528 B = 6436.401747 C = 7195.212163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.630 5.630 3 C -0.263 4.263 4 H 0.036 0.964 5 C -0.021 4.021 6 N -0.949 5.949 7 Si 0.945 3.055 8 H -0.269 1.269 9 H -0.309 1.309 10 H -0.258 1.258 11 C 0.131 3.869 12 C -0.114 4.114 13 C -0.077 4.077 14 C -0.083 4.083 15 C -0.083 4.083 16 C -0.111 4.111 17 C -0.084 4.084 18 C -0.195 4.195 19 C 0.508 3.492 20 F -0.174 7.174 21 F -0.187 7.187 22 F -0.183 7.183 23 C -0.090 4.090 24 H 0.015 0.985 25 H 0.036 0.964 26 H 0.063 0.937 27 H 0.263 0.737 28 H 0.072 0.928 29 H 0.029 0.971 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.155 0.845 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.328 -19.757 -11.146 22.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.355 5.355 3 C -0.393 4.393 4 H 0.053 0.947 5 C -0.218 4.218 6 N -0.593 5.593 7 Si 0.773 3.227 8 H -0.196 1.196 9 H -0.237 1.237 10 H -0.182 1.182 11 C 0.006 3.994 12 C -0.154 4.154 13 C -0.115 4.115 14 C -0.083 4.083 15 C -0.100 4.100 16 C -0.129 4.129 17 C -0.102 4.102 18 C -0.196 4.196 19 C 0.454 3.546 20 F -0.155 7.155 21 F -0.169 7.169 22 F -0.164 7.164 23 C -0.108 4.108 24 H 0.033 0.967 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.176 0.824 35 H 0.187 0.813 36 H 0.172 0.828 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.198 -19.658 -11.121 22.692 hybrid contribution 1.106 0.664 0.570 1.410 sum -1.092 -18.994 -10.551 21.755 Atomic orbital electron populations 1.21189 0.82283 1.00268 0.98427 1.44245 1.02435 1.01627 1.87169 1.18678 1.06125 0.91714 1.22781 0.94676 1.26114 0.96765 0.98602 1.00269 1.70022 1.09288 1.39136 1.40883 0.85832 0.78312 0.78379 0.80201 1.19570 1.23736 1.18238 1.21320 0.95424 0.87054 0.95574 1.21915 0.99849 0.95181 0.98446 1.20626 1.01256 0.97483 0.92163 1.20010 0.93891 0.97496 0.96947 1.21656 0.98715 0.94624 0.95027 1.21547 0.96963 0.99836 0.94520 1.21282 0.93141 0.94867 1.00932 1.19989 0.96067 1.06956 0.96573 1.18435 0.84557 0.74616 0.76981 1.93150 1.96757 1.86394 1.39190 1.93220 1.96836 1.30511 1.96302 1.93195 1.55872 1.88366 1.78992 1.20879 0.98338 0.98252 0.93335 0.96654 0.94512 0.91887 0.92858 0.90931 0.95254 0.95297 0.91187 0.87839 0.92061 0.82372 0.81271 0.82768 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.63 10.70 127.77 1.37 6.00 16 2 N -0.63 -29.53 2.47 -726.93 -1.79 -31.32 16 3 C -0.26 -15.19 9.88 84.04 0.83 -14.36 16 4 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 5 C -0.02 -1.24 5.29 84.86 0.45 -0.80 16 6 N -0.95 -60.33 13.97 21.65 0.30 -60.03 16 7 Si 0.94 46.25 25.10 68.60 1.72 47.97 16 8 H -0.27 -12.32 6.68 99.48 0.66 -11.66 16 9 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 10 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 11 C 0.13 5.22 4.53 86.38 0.39 5.61 16 12 C -0.11 -3.93 5.52 30.59 0.17 -3.76 16 13 C -0.08 -2.05 5.34 29.85 0.16 -1.89 16 14 C -0.08 -2.04 5.13 -19.87 -0.10 -2.14 16 15 C -0.08 -1.48 9.70 22.27 0.22 -1.27 16 16 C -0.11 -1.69 10.05 22.27 0.22 -1.47 16 17 C -0.08 -1.57 9.43 22.27 0.21 -1.36 16 18 C -0.19 -4.77 5.37 -19.86 -0.11 -4.88 16 19 C 0.51 12.98 3.32 71.24 0.24 13.22 16 20 F -0.17 -3.94 15.97 44.97 0.72 -3.22 16 21 F -0.19 -5.54 17.24 44.97 0.78 -4.76 16 22 F -0.18 -4.88 17.24 44.97 0.78 -4.11 16 23 C -0.09 -2.46 9.25 22.27 0.21 -2.26 16 24 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.04 1.41 8.00 -2.39 -0.02 1.39 16 26 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 27 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 28 H 0.07 2.39 8.07 -2.38 -0.02 2.37 16 29 H 0.03 1.31 3.38 -2.38 -0.01 1.30 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.10 2.09 8.09 -2.38 -0.02 2.07 16 33 H 0.06 1.76 8.09 -2.38 -0.02 1.74 16 34 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 36 H 0.15 2.18 7.16 -2.91 -0.02 2.16 16 37 H 0.12 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -69.44 322.26 7.78 -61.66 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: 1.03 Total: 3.16 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 4.25 Total: -9.35 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -1.49 Total: -91.35 kcal Atomic # 9 Polarization: -14.36 SS G_CDS: 2.27 Total: -12.09 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.72 Total: 47.97 kcal Total: -69.44 7.78 -61.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207845689.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.645 kcal (2) G-P(sol) polarization free energy of solvation -69.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds