Wall clock time and date at job start Tue Mar 31 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47219 * 2 1 4 4 C 1.52990 * 109.46970 * 119.99807 * 2 1 3 5 5 N 1.46499 * 109.47510 * 295.17186 * 4 2 1 6 6 C 1.36931 * 120.00110 * 273.74815 * 5 4 2 7 7 H 1.08005 * 120.00184 * 142.15660 * 6 5 4 8 8 C 1.38816 * 120.00254 * 322.15557 * 6 5 4 9 9 N 1.31615 * 119.99696 * 339.14617 * 8 6 5 10 10 Si 1.86795 * 120.00168 * 159.14296 * 8 6 5 11 11 H 1.48502 * 109.47414 * 60.00202 * 10 8 6 12 12 H 1.48502 * 109.46932 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47129 * 300.00131 * 10 8 6 14 14 C 1.46498 * 119.99846 * 93.74552 * 5 4 2 15 15 C 1.50703 * 109.47249 * 90.00559 * 14 5 4 16 16 C 1.38241 * 119.99430 * 269.72389 * 15 14 5 17 17 C 1.38236 * 119.99418 * 179.76514 * 16 15 14 18 18 C 1.38231 * 120.00030 * 0.48491 * 17 16 15 19 19 C 1.38236 * 120.00167 * 359.79381 * 18 17 16 20 20 C 1.38229 * 120.00306 * 89.99827 * 15 14 5 21 21 C 1.52998 * 109.46811 * 240.00203 * 2 1 3 22 22 F 1.39898 * 109.47221 * 299.99423 * 21 2 1 23 23 F 1.39893 * 109.47796 * 60.00348 * 21 2 1 24 24 F 1.39908 * 109.46735 * 179.97438 * 21 2 1 25 25 H 1.09000 * 109.47106 * 185.48756 * 1 2 3 26 26 H 1.08997 * 109.47192 * 305.49477 * 1 2 3 27 27 H 1.09006 * 109.46933 * 65.49205 * 1 2 3 28 28 H 1.09003 * 109.47233 * 175.17417 * 4 2 1 29 29 H 1.09003 * 109.47165 * 55.17727 * 4 2 1 30 30 H 0.96999 * 120.00163 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.47305 * 210.00212 * 14 5 4 32 32 H 1.08995 * 109.47443 * 330.00262 * 14 5 4 33 33 H 1.08000 * 120.00332 * 359.97438 * 16 15 14 34 34 H 1.07997 * 119.99791 * 180.25787 * 17 16 15 35 35 H 1.08004 * 119.99721 * 179.76679 * 18 17 16 36 36 H 1.07996 * 119.99866 * 179.97438 * 19 18 17 37 37 H 1.08000 * 119.99742 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6489 0.0333 2.4426 6 6 2.4411 1.0531 2.8980 7 1 1.9906 1.9480 3.3014 8 6 3.8232 0.9368 2.8413 9 7 4.3803 -0.2522 2.7503 10 14 4.8923 2.4676 2.8939 11 1 4.6458 3.2003 4.1619 12 1 6.3226 2.0754 2.8184 13 1 4.5585 3.3443 1.7428 14 6 0.4102 -0.3034 3.1486 15 6 0.6998 -1.3376 4.2058 16 6 0.6116 -2.6827 3.8992 17 6 0.8820 -3.6314 4.8677 18 6 1.2306 -3.2350 6.1452 19 6 1.3130 -1.8899 6.4533 20 6 1.0479 -0.9413 5.4835 21 6 2.0400 -0.7212 -1.2493 22 9 1.5737 -2.0402 -1.2492 23 9 1.5738 -0.0618 -2.3915 24 9 3.4390 -0.7207 -1.2495 25 1 -0.3633 -1.0230 0.0983 26 1 -0.3633 0.5967 0.8367 27 1 -0.3633 0.4263 -0.9351 28 1 3.1266 -0.7967 1.2071 29 1 1.6078 -1.7209 1.2935 30 1 5.3461 -0.3335 2.7103 31 1 0.0048 0.5927 3.6184 32 1 -0.3154 -0.7018 2.4396 33 1 0.3349 -2.9923 2.9023 34 1 0.8172 -4.6822 4.6271 35 1 1.4381 -3.9762 6.9028 36 1 1.5850 -1.5803 7.4515 37 1 1.1120 0.1096 5.7242 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208906613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:25 Heat of formation + Delta-G solvation = -121.873712 kcal Electronic energy + Delta-G solvation = -23733.903654 eV Core-core repulsion = 19868.229069 eV Total energy + Delta-G solvation = -3865.674585 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.54912 -47.06851 -46.97986 -38.57615 -36.48305 -33.19506 -32.01134 -30.19451 -29.77075 -26.48625 -25.46798 -25.27174 -22.17420 -21.86234 -20.48660 -19.99604 -17.97384 -17.81664 -16.65904 -16.62812 -16.06305 -15.10093 -14.46397 -14.39418 -14.26167 -13.99563 -13.78873 -13.47520 -13.36338 -13.21698 -13.18962 -13.11263 -12.77244 -12.68201 -12.23460 -11.91094 -11.80182 -11.52379 -11.02262 -10.92103 -10.83868 -10.62996 -10.55115 -10.31721 -10.04608 -9.99826 -9.89185 -8.62314 -8.21376 -8.00046 -6.74060 -5.89647 -3.50471 2.08960 2.12077 3.30450 3.38019 3.38670 3.40105 4.30370 4.48006 4.54324 4.69942 4.70826 5.24387 5.49470 5.52164 5.57305 5.61243 5.65650 5.69528 5.84487 5.90647 6.08084 6.20744 6.30495 6.32196 6.34228 6.50284 6.61217 6.73935 6.76413 6.81682 7.12936 7.16779 7.46550 7.47232 7.71045 7.74617 8.37752 9.02480 9.64348 10.22450 11.09453 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.012852 B = 0.007397 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.195037 B = 3784.302057 C = 5154.158127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.155 4.155 3 H 0.111 0.889 4 C 0.150 3.850 5 N -0.563 5.563 6 C -0.271 4.271 7 H 0.065 0.935 8 C 0.021 3.979 9 N -0.873 5.873 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.289 1.289 13 H -0.281 1.281 14 C 0.171 3.829 15 C -0.072 4.072 16 C -0.116 4.116 17 C -0.127 4.127 18 C -0.141 4.141 19 C -0.125 4.125 20 C -0.096 4.096 21 C 0.450 3.550 22 F -0.190 7.190 23 F -0.197 7.197 24 F -0.183 7.183 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.106 0.894 29 H 0.038 0.962 30 H 0.258 0.742 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.364 -2.561 -1.616 7.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.177 4.177 3 H 0.129 0.871 4 C 0.022 3.978 5 N -0.280 5.280 6 C -0.401 4.401 7 H 0.082 0.918 8 C -0.182 4.182 9 N -0.513 5.513 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.215 1.215 13 H -0.207 1.207 14 C 0.045 3.955 15 C -0.075 4.075 16 C -0.135 4.135 17 C -0.145 4.145 18 C -0.160 4.160 19 C -0.143 4.143 20 C -0.115 4.115 21 C 0.396 3.604 22 F -0.172 7.172 23 F -0.179 7.179 24 F -0.165 7.165 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.123 0.877 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.162 -2.611 -1.650 7.800 hybrid contribution 1.052 0.503 -0.185 1.181 sum -6.110 -2.107 -1.835 6.719 Atomic orbital electron populations 1.21800 0.93295 1.02345 1.02376 1.23283 0.98398 1.03164 0.92852 0.87120 1.20969 1.03412 0.91119 0.82254 1.43738 1.22951 1.37474 1.23852 1.18984 0.87054 0.93770 1.40284 0.91776 1.25257 0.97645 0.95954 0.99328 1.69940 1.10342 1.21315 1.49743 0.86491 0.79558 0.83101 0.78362 1.20611 1.21523 1.20682 1.20216 0.89954 0.94070 0.91233 1.20954 0.96261 0.95168 0.95141 1.20918 1.01274 0.92979 0.98350 1.20947 1.01087 0.98616 0.93822 1.20873 1.02797 0.95717 0.96583 1.21011 1.00969 0.93347 0.99000 1.20938 0.98598 0.99037 0.92949 1.21059 0.75570 0.77543 0.86242 1.93109 1.88576 1.38645 1.96875 1.93105 1.88677 1.80994 1.55137 1.93174 1.30113 1.96391 1.96778 0.92524 0.90150 0.93114 0.87672 0.94387 0.93174 0.92745 0.93258 0.87269 0.87350 0.87447 0.87309 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 7.77 37.16 0.29 -1.88 16 2 C -0.15 -2.85 2.56 -90.62 -0.23 -3.08 16 3 H 0.11 2.16 8.14 -51.93 -0.42 1.74 16 4 C 0.15 3.23 4.53 -4.05 -0.02 3.21 16 5 N -0.56 -12.50 2.18 -174.62 -0.38 -12.88 16 6 C -0.27 -6.73 9.44 -15.06 -0.14 -6.88 16 7 H 0.06 1.58 7.91 -52.48 -0.42 1.17 16 8 C 0.02 0.53 5.00 -17.43 -0.09 0.45 16 9 N -0.87 -24.00 11.41 55.49 0.63 -23.37 16 10 Si 0.90 20.66 29.60 -169.99 -5.03 15.62 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 C 0.17 3.28 4.92 -5.19 -0.03 3.25 16 15 C -0.07 -1.41 5.46 -104.62 -0.57 -1.98 16 16 C -0.12 -2.14 9.70 -39.58 -0.38 -2.52 16 17 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 18 C -0.14 -2.35 10.05 -39.58 -0.40 -2.74 16 19 C -0.13 -2.19 10.05 -39.58 -0.40 -2.58 16 20 C -0.10 -1.86 9.70 -39.59 -0.38 -2.24 16 21 C 0.45 8.11 2.69 37.16 0.10 8.21 16 22 F -0.19 -3.37 16.47 2.25 0.04 -3.33 16 23 F -0.20 -3.35 16.70 2.25 0.04 -3.31 16 24 F -0.18 -3.64 16.72 2.25 0.04 -3.60 16 25 H 0.06 0.83 7.95 -51.93 -0.41 0.42 16 26 H 0.08 1.24 6.66 -51.93 -0.35 0.90 16 27 H 0.05 0.71 7.65 -51.93 -0.40 0.31 16 28 H 0.11 2.66 5.02 -51.93 -0.26 2.40 16 29 H 0.04 0.80 7.84 -51.93 -0.41 0.39 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.05 1.01 7.98 -51.93 -0.41 0.60 16 32 H 0.05 0.84 6.44 -51.93 -0.33 0.50 16 33 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 34 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16 LS Contribution 320.53 15.07 4.83 4.83 Total: -1.00 -26.98 320.53 -7.15 -34.13 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.66 Total: 3.25 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -2.65 Total: -11.34 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.25 Total: -36.25 kcal Atomic # 9 Polarization: -10.36 SS G_CDS: 0.11 Total: -10.24 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.98 -7.15 -34.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208906613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.745 kcal (2) G-P(sol) polarization free energy of solvation -26.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds