Wall clock time and date at job start Tue Mar 31 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47219 * 2 1 4 4 C 1.52990 * 109.46970 * 119.99807 * 2 1 3 5 5 N 1.46499 * 109.47510 * 295.17186 * 4 2 1 6 6 C 1.36931 * 120.00110 * 273.74815 * 5 4 2 7 7 H 1.08005 * 120.00184 * 142.15660 * 6 5 4 8 8 C 1.38816 * 120.00254 * 322.15557 * 6 5 4 9 9 N 1.31615 * 119.99696 * 339.14617 * 8 6 5 10 10 Si 1.86795 * 120.00168 * 159.14296 * 8 6 5 11 11 H 1.48502 * 109.47414 * 60.00202 * 10 8 6 12 12 H 1.48502 * 109.46932 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47129 * 300.00131 * 10 8 6 14 14 C 1.46498 * 119.99846 * 93.74552 * 5 4 2 15 15 C 1.50703 * 109.47249 * 90.00559 * 14 5 4 16 16 C 1.38241 * 119.99430 * 269.72389 * 15 14 5 17 17 C 1.38236 * 119.99418 * 179.76514 * 16 15 14 18 18 C 1.38231 * 120.00030 * 0.48491 * 17 16 15 19 19 C 1.38236 * 120.00167 * 359.79381 * 18 17 16 20 20 C 1.38229 * 120.00306 * 89.99827 * 15 14 5 21 21 C 1.52998 * 109.46811 * 240.00203 * 2 1 3 22 22 F 1.39898 * 109.47221 * 299.99423 * 21 2 1 23 23 F 1.39893 * 109.47796 * 60.00348 * 21 2 1 24 24 F 1.39908 * 109.46735 * 179.97438 * 21 2 1 25 25 H 1.09000 * 109.47106 * 185.48756 * 1 2 3 26 26 H 1.08997 * 109.47192 * 305.49477 * 1 2 3 27 27 H 1.09006 * 109.46933 * 65.49205 * 1 2 3 28 28 H 1.09003 * 109.47233 * 175.17417 * 4 2 1 29 29 H 1.09003 * 109.47165 * 55.17727 * 4 2 1 30 30 H 0.96999 * 120.00163 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.47305 * 210.00212 * 14 5 4 32 32 H 1.08995 * 109.47443 * 330.00262 * 14 5 4 33 33 H 1.08000 * 120.00332 * 359.97438 * 16 15 14 34 34 H 1.07997 * 119.99791 * 180.25787 * 17 16 15 35 35 H 1.08004 * 119.99721 * 179.76679 * 18 17 16 36 36 H 1.07996 * 119.99866 * 179.97438 * 19 18 17 37 37 H 1.08000 * 119.99742 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6489 0.0333 2.4426 6 6 2.4411 1.0531 2.8980 7 1 1.9906 1.9480 3.3014 8 6 3.8232 0.9368 2.8413 9 7 4.3803 -0.2522 2.7503 10 14 4.8923 2.4676 2.8939 11 1 4.6458 3.2003 4.1619 12 1 6.3226 2.0754 2.8184 13 1 4.5585 3.3443 1.7428 14 6 0.4102 -0.3034 3.1486 15 6 0.6998 -1.3376 4.2058 16 6 0.6116 -2.6827 3.8992 17 6 0.8820 -3.6314 4.8677 18 6 1.2306 -3.2350 6.1452 19 6 1.3130 -1.8899 6.4533 20 6 1.0479 -0.9413 5.4835 21 6 2.0400 -0.7212 -1.2493 22 9 1.5737 -2.0402 -1.2492 23 9 1.5738 -0.0618 -2.3915 24 9 3.4390 -0.7207 -1.2495 25 1 -0.3633 -1.0230 0.0983 26 1 -0.3633 0.5967 0.8367 27 1 -0.3633 0.4263 -0.9351 28 1 3.1266 -0.7967 1.2071 29 1 1.6078 -1.7209 1.2935 30 1 5.3461 -0.3335 2.7103 31 1 0.0048 0.5927 3.6184 32 1 -0.3154 -0.7018 2.4396 33 1 0.3349 -2.9923 2.9023 34 1 0.8172 -4.6822 4.6271 35 1 1.4381 -3.9762 6.9028 36 1 1.5850 -1.5803 7.4515 37 1 1.1120 0.1096 5.7242 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208906613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:25 Heat of formation + Delta-G solvation = -132.919066 kcal Electronic energy + Delta-G solvation = -23734.382616 eV Core-core repulsion = 19868.229069 eV Total energy + Delta-G solvation = -3866.153547 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.01564 -48.50309 -48.48124 -39.99006 -38.09198 -34.77668 -33.72012 -31.56592 -31.37198 -27.91656 -27.27003 -26.74466 -23.79496 -23.24882 -21.94234 -21.56057 -19.46808 -19.31246 -18.40357 -18.13089 -17.48250 -16.81536 -15.95444 -15.87806 -15.83616 -15.48777 -15.34299 -15.02271 -14.94071 -14.69069 -14.65103 -14.60494 -14.18444 -14.08145 -13.61020 -13.47339 -13.31096 -13.02779 -12.73672 -12.59198 -12.53578 -12.15873 -11.98826 -11.91405 -11.66650 -11.61035 -11.51412 -10.53487 -9.60008 -9.41840 -8.58071 -7.81477 -5.44755 0.70240 0.72706 1.46204 1.50383 1.54423 1.91004 2.50489 2.92406 3.10512 3.19114 3.23679 3.36439 3.97169 4.12723 4.16140 4.21135 4.28864 4.37179 4.44329 4.50123 4.64661 4.83278 4.84216 4.94456 4.97387 5.11471 5.17800 5.31474 5.37420 5.38143 5.64109 5.73294 5.77727 5.80449 6.03077 6.36476 6.47066 7.15228 7.81573 8.35800 9.13317 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.012852 B = 0.007397 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.195037 B = 3784.302057 C = 5154.158127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.147 4.147 3 H 0.097 0.903 4 C 0.156 3.844 5 N -0.572 5.572 6 C -0.264 4.264 7 H 0.063 0.937 8 C -0.025 4.025 9 N -0.905 5.905 10 Si 0.944 3.056 11 H -0.276 1.276 12 H -0.300 1.300 13 H -0.277 1.277 14 C 0.173 3.827 15 C -0.094 4.094 16 C -0.130 4.130 17 C -0.131 4.131 18 C -0.141 4.141 19 C -0.133 4.133 20 C -0.120 4.120 21 C 0.455 3.545 22 F -0.186 7.186 23 F -0.188 7.188 24 F -0.197 7.197 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.249 0.751 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.634 -3.106 -1.495 9.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.169 4.169 3 H 0.115 0.885 4 C 0.028 3.972 5 N -0.290 5.290 6 C -0.394 4.394 7 H 0.081 0.919 8 C -0.223 4.223 9 N -0.548 5.548 10 Si 0.773 3.227 11 H -0.201 1.201 12 H -0.226 1.226 13 H -0.203 1.203 14 C 0.048 3.952 15 C -0.096 4.096 16 C -0.149 4.149 17 C -0.149 4.149 18 C -0.160 4.160 19 C -0.151 4.151 20 C -0.139 4.139 21 C 0.401 3.599 22 F -0.168 7.168 23 F -0.169 7.169 24 F -0.178 7.178 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.136 0.864 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.463 -3.145 -1.528 9.157 hybrid contribution 1.359 0.610 -0.185 1.501 sum -7.104 -2.535 -1.713 7.735 Atomic orbital electron populations 1.21761 0.90600 1.03215 1.03464 1.23088 1.00516 1.01761 0.91578 0.88455 1.20729 1.01337 0.91626 0.83473 1.43814 1.23292 1.37265 1.24650 1.19166 0.87310 0.94407 1.38553 0.91933 1.25777 0.98724 0.97582 1.00255 1.70081 1.09688 1.22781 1.52223 0.85712 0.77709 0.80839 0.78430 1.20126 1.22611 1.20342 1.20272 0.88897 0.94414 0.91633 1.21030 0.97362 0.95855 0.95394 1.21142 1.01571 0.92865 0.99303 1.21341 0.99989 0.99874 0.93666 1.21293 1.01376 0.96000 0.97284 1.21327 1.00436 0.93684 0.99659 1.21074 0.99828 0.99241 0.93740 1.20933 0.74921 0.77687 0.86407 1.93116 1.88423 1.38381 1.96879 1.93122 1.88453 1.80812 1.54546 1.93154 1.31353 1.96461 1.96850 0.91525 0.90107 0.91195 0.91307 0.94195 0.94144 0.92578 0.91033 0.86387 0.84577 0.84314 0.85211 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 7.77 71.98 0.56 -3.24 16 2 C -0.15 -5.28 2.56 -10.80 -0.03 -5.31 16 3 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 4 C 0.16 6.69 4.53 86.38 0.39 7.08 16 5 N -0.57 -25.30 2.18 -706.36 -1.54 -26.84 16 6 C -0.26 -13.15 9.44 84.04 0.79 -12.36 16 7 H 0.06 3.09 7.91 -2.91 -0.02 3.07 16 8 C -0.02 -1.28 5.00 84.86 0.42 -0.86 16 9 N -0.91 -50.92 11.41 21.65 0.25 -50.68 16 10 Si 0.94 42.98 29.60 68.60 2.03 45.01 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 12 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 13 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 14 C 0.17 6.49 4.92 85.63 0.42 6.91 16 15 C -0.09 -3.60 5.46 -19.86 -0.11 -3.71 16 16 C -0.13 -4.59 9.70 22.27 0.22 -4.38 16 17 C -0.13 -4.13 10.05 22.27 0.22 -3.90 16 18 C -0.14 -4.33 10.05 22.27 0.22 -4.11 16 19 C -0.13 -4.45 10.05 22.27 0.22 -4.23 16 20 C -0.12 -4.58 9.70 22.27 0.22 -4.36 16 21 C 0.46 15.92 2.69 71.98 0.19 16.11 16 22 F -0.19 -6.32 16.47 44.97 0.74 -5.58 16 23 F -0.19 -6.04 16.70 44.97 0.75 -5.29 16 24 F -0.20 -7.82 16.72 44.97 0.75 -7.06 16 25 H 0.07 1.77 7.95 -2.39 -0.02 1.75 16 26 H 0.08 2.32 6.66 -2.39 -0.02 2.30 16 27 H 0.07 1.74 7.65 -2.38 -0.02 1.72 16 28 H 0.07 3.56 5.02 -2.39 -0.01 3.54 16 29 H 0.04 1.66 7.84 -2.39 -0.02 1.64 16 30 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 31 H 0.06 2.05 7.98 -2.39 -0.02 2.03 16 32 H 0.07 2.32 6.44 -2.39 -0.02 2.30 16 33 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 34 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 35 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 36 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 37 H 0.11 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -57.46 320.53 7.80 -49.66 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 1.07 Total: 17.14 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 3.75 Total: -16.36 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -1.29 Total: -77.52 kcal Atomic # 9 Polarization: -20.17 SS G_CDS: 2.24 Total: -17.93 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -57.46 7.80 -49.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208906613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.260 kcal (2) G-P(sol) polarization free energy of solvation -57.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds