Wall clock time and date at job start Tue Mar 31 2020 06:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99487 * 2 1 4 4 C 1.50703 * 109.47187 * 293.95245 * 3 2 1 5 5 H 1.07999 * 120.00081 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99806 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00232 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99807 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47304 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46789 * 119.99950 * 8 6 4 11 11 H 1.48502 * 109.47111 * 239.99889 * 8 6 4 12 12 C 1.46893 * 111.00263 * 123.95552 * 2 1 3 13 13 C 1.52991 * 109.47263 * 66.04564 * 12 2 1 14 14 C 1.50707 * 109.47282 * 180.02562 * 13 12 2 15 15 C 1.38258 * 119.99991 * 270.21622 * 14 13 12 16 16 C 1.38211 * 119.99779 * 180.25721 * 15 14 13 17 17 C 1.38256 * 120.00062 * 359.50247 * 16 15 14 18 18 C 1.38215 * 120.00141 * 0.28711 * 17 16 15 19 19 C 1.50700 * 120.00244 * 179.97438 * 18 17 16 20 20 F 1.39901 * 109.46773 * 359.97438 * 19 18 17 21 21 F 1.39897 * 109.47450 * 119.99670 * 19 18 17 22 22 F 1.39898 * 109.46871 * 239.99865 * 19 18 17 23 23 C 1.38211 * 119.99838 * 89.99970 * 14 13 12 24 24 H 1.09000 * 109.47383 * 296.04232 * 1 2 3 25 25 H 1.09003 * 109.47402 * 56.04682 * 1 2 3 26 26 H 1.09004 * 109.47359 * 176.04518 * 1 2 3 27 27 H 1.08992 * 109.47165 * 53.95558 * 3 2 1 28 28 H 1.09003 * 109.46650 * 173.95552 * 3 2 1 29 29 H 0.96995 * 119.99834 * 179.97438 * 7 6 4 30 30 H 1.09010 * 109.46854 * 306.04817 * 12 2 1 31 31 H 1.09000 * 109.47223 * 186.04998 * 12 2 1 32 32 H 1.08997 * 109.47282 * 60.00125 * 13 12 2 33 33 H 1.09001 * 109.47501 * 299.99821 * 13 12 2 34 34 H 1.07998 * 119.99837 * 0.03764 * 15 14 13 35 35 H 1.08002 * 120.00200 * 179.78851 * 16 15 14 36 36 H 1.07999 * 120.00077 * 180.25932 * 17 16 15 37 37 H 1.08001 * 120.00363 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0738 1.5115 -2.0485 6 6 2.0274 3.3492 -1.5289 7 7 2.7125 4.0017 -0.6153 8 14 1.5824 4.1870 -3.1381 9 1 0.8133 3.2451 -3.9904 10 1 0.7557 5.3885 -2.8585 11 1 2.8238 4.5936 -3.8443 12 6 1.9955 -0.7660 1.1375 13 6 1.6315 -2.2425 0.9703 14 6 2.1711 -3.0283 2.1376 15 6 3.4421 -3.5692 2.0784 16 6 3.9349 -4.2943 3.1469 17 6 3.1609 -4.4700 4.2789 18 6 1.8919 -3.9256 4.3398 19 6 1.0480 -4.1176 5.5734 20 9 1.7585 -4.8744 6.5113 21 9 0.7337 -2.8698 6.1224 22 9 -0.1318 -4.7872 5.2317 23 6 1.3971 -3.2043 3.2690 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5740 -0.8525 26 1 -0.3634 -1.0252 -0.0709 27 1 1.5610 1.9273 0.8309 28 1 3.0796 1.3445 0.1082 29 1 2.9876 4.9176 -0.7776 30 1 1.5610 -0.3872 2.0628 31 1 3.0797 -0.6610 1.1755 32 1 2.0658 -2.6213 0.0451 33 1 0.5472 -2.3475 0.9323 34 1 4.0485 -3.4281 1.1959 35 1 4.9265 -4.7198 3.0994 36 1 3.5476 -5.0331 5.1155 37 1 0.4054 -2.7792 3.3165 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209114663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:18 Heat of formation + Delta-G solvation = -131.938591 kcal Electronic energy + Delta-G solvation = -22062.123243 eV Core-core repulsion = 18196.012212 eV Total energy + Delta-G solvation = -3866.111031 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.33281 -47.86527 -47.77813 -39.73514 -36.85614 -33.58927 -32.37022 -31.88630 -28.81845 -27.00325 -26.21534 -25.37941 -23.01016 -22.36980 -21.06787 -20.04299 -18.64869 -18.53744 -18.19229 -16.46493 -16.34689 -15.65771 -15.13435 -14.71157 -14.68406 -14.54326 -14.30002 -14.23833 -14.09349 -13.96261 -13.95203 -13.61830 -13.02596 -12.90408 -12.72648 -12.65569 -11.97124 -11.61827 -11.47654 -11.36925 -11.13096 -10.90761 -10.62125 -10.57195 -10.38616 -9.87512 -9.39320 -9.27000 -8.89852 -8.45683 -7.28629 -6.04251 -4.05702 0.76219 1.06835 2.48281 3.29918 3.29979 3.37367 3.42132 3.53775 3.84069 4.25329 4.40010 4.56396 4.63236 4.81266 5.03821 5.11056 5.22284 5.28961 5.32051 5.53947 5.64768 5.68752 5.94868 5.95276 6.06211 6.09762 6.15161 6.31761 6.40704 6.51387 6.60837 6.73528 7.26585 7.32465 7.78129 8.05912 8.16725 8.52283 9.02278 9.58670 11.06742 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.029511 B = 0.002982 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.573972 B = 9388.886799 C = 9657.446335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.541 5.541 3 C 0.192 3.808 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.061 3.939 13 C -0.081 4.081 14 C -0.069 4.069 15 C -0.083 4.083 16 C -0.119 4.119 17 C -0.084 4.084 18 C -0.184 4.184 19 C 0.509 3.491 20 F -0.180 7.180 21 F -0.176 7.176 22 F -0.178 7.178 23 C -0.068 4.068 24 H 0.010 0.990 25 H 0.074 0.926 26 H 0.046 0.954 27 H -0.009 1.009 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.023 0.977 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.461 -18.767 10.792 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.266 5.266 3 C 0.067 3.933 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.067 4.067 13 C -0.118 4.118 14 C -0.070 4.070 15 C -0.101 4.101 16 C -0.137 4.137 17 C -0.102 4.102 18 C -0.185 4.185 19 C 0.454 3.546 20 F -0.161 7.161 21 F -0.157 7.157 22 F -0.159 7.159 23 C -0.087 4.087 24 H 0.029 0.971 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.009 0.991 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.248 -18.809 10.425 21.506 hybrid contribution -0.573 0.989 0.278 1.176 sum -0.821 -17.820 10.703 20.803 Atomic orbital electron populations 1.22268 0.89022 0.99530 1.00615 1.62113 1.06940 1.17906 1.39598 1.19744 0.95378 0.81498 0.96691 1.21202 1.34740 0.96926 1.01685 0.91760 1.25003 0.95311 0.97366 0.97020 1.69970 1.38428 1.11428 1.34024 0.86441 0.78163 0.79317 0.83499 1.19639 1.21124 1.20997 1.22007 1.00243 0.91616 0.92873 1.20732 1.01246 0.94861 0.95004 1.20046 0.94107 0.97271 0.95579 1.21413 0.94897 0.94892 0.98855 1.21156 1.00112 0.99389 0.93033 1.20948 0.92289 0.98077 0.98917 1.19919 0.96858 1.07089 0.94617 1.18341 0.78461 0.73944 0.83811 1.93151 1.78279 1.76709 1.67971 1.93231 1.93343 1.41993 1.87165 1.93213 1.49668 1.80855 1.92202 1.20821 1.00265 0.95862 0.91708 0.97101 0.90684 0.93508 0.99128 0.95241 0.92966 0.95872 0.91270 0.89689 0.90757 0.84716 0.84876 0.84770 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.14 60.06 0.55 1.20 16 2 N -0.54 -11.40 4.75 -244.37 -1.16 -12.57 16 3 C 0.19 4.98 4.72 -4.97 -0.02 4.96 16 4 C -0.51 -14.15 8.46 -34.44 -0.29 -14.44 16 5 H 0.06 1.77 7.12 -52.49 -0.37 1.40 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.06 1.06 4.94 -3.83 -0.02 1.04 16 13 C -0.08 -1.08 5.27 -27.88 -0.15 -1.22 16 14 C -0.07 -0.82 5.13 -104.62 -0.54 -1.36 16 15 C -0.08 -0.86 9.70 -39.58 -0.38 -1.24 16 16 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 17 C -0.08 -0.81 9.43 -39.58 -0.37 -1.19 16 18 C -0.18 -2.04 5.37 -104.62 -0.56 -2.60 16 19 C 0.51 5.64 3.32 36.01 0.12 5.76 16 20 F -0.18 -1.90 15.97 2.25 0.04 -1.87 16 21 F -0.18 -2.14 17.24 2.25 0.04 -2.10 16 22 F -0.18 -2.03 17.24 2.25 0.04 -1.99 16 23 C -0.07 -0.80 9.25 -39.58 -0.37 -1.17 16 24 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.07 1.54 6.76 -51.93 -0.35 1.19 16 26 H 0.05 0.74 6.47 -51.93 -0.34 0.40 16 27 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 28 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.02 0.41 8.12 -51.92 -0.42 -0.01 16 31 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 32 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 33 H 0.07 0.95 6.50 -51.93 -0.34 0.62 16 34 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.13 1.05 7.16 -52.49 -0.38 0.68 16 37 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 324.41 15.07 4.89 4.89 Total: -1.00 -29.94 324.41 -7.66 -37.60 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -4.69 Total: -4.18 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -2.53 Total: -10.31 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.43 Total: -38.51 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.11 Total: -5.96 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.94 -7.66 -37.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209114663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.335 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds