Wall clock time and date at job start Tue Mar 31 2020 06:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99487 * 2 1 4 4 C 1.50703 * 109.47187 * 293.95245 * 3 2 1 5 5 H 1.07999 * 120.00081 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99806 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00232 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99807 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47304 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46789 * 119.99950 * 8 6 4 11 11 H 1.48502 * 109.47111 * 239.99889 * 8 6 4 12 12 C 1.46893 * 111.00263 * 123.95552 * 2 1 3 13 13 C 1.52991 * 109.47263 * 66.04564 * 12 2 1 14 14 C 1.50707 * 109.47282 * 180.02562 * 13 12 2 15 15 C 1.38258 * 119.99991 * 270.21622 * 14 13 12 16 16 C 1.38211 * 119.99779 * 180.25721 * 15 14 13 17 17 C 1.38256 * 120.00062 * 359.50247 * 16 15 14 18 18 C 1.38215 * 120.00141 * 0.28711 * 17 16 15 19 19 C 1.50700 * 120.00244 * 179.97438 * 18 17 16 20 20 F 1.39901 * 109.46773 * 359.97438 * 19 18 17 21 21 F 1.39897 * 109.47450 * 119.99670 * 19 18 17 22 22 F 1.39898 * 109.46871 * 239.99865 * 19 18 17 23 23 C 1.38211 * 119.99838 * 89.99970 * 14 13 12 24 24 H 1.09000 * 109.47383 * 296.04232 * 1 2 3 25 25 H 1.09003 * 109.47402 * 56.04682 * 1 2 3 26 26 H 1.09004 * 109.47359 * 176.04518 * 1 2 3 27 27 H 1.08992 * 109.47165 * 53.95558 * 3 2 1 28 28 H 1.09003 * 109.46650 * 173.95552 * 3 2 1 29 29 H 0.96995 * 119.99834 * 179.97438 * 7 6 4 30 30 H 1.09010 * 109.46854 * 306.04817 * 12 2 1 31 31 H 1.09000 * 109.47223 * 186.04998 * 12 2 1 32 32 H 1.08997 * 109.47282 * 60.00125 * 13 12 2 33 33 H 1.09001 * 109.47501 * 299.99821 * 13 12 2 34 34 H 1.07998 * 119.99837 * 0.03764 * 15 14 13 35 35 H 1.08002 * 120.00200 * 179.78851 * 16 15 14 36 36 H 1.07999 * 120.00077 * 180.25932 * 17 16 15 37 37 H 1.08001 * 120.00363 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0738 1.5115 -2.0485 6 6 2.0274 3.3492 -1.5289 7 7 2.7125 4.0017 -0.6153 8 14 1.5824 4.1870 -3.1381 9 1 0.8133 3.2451 -3.9904 10 1 0.7557 5.3885 -2.8585 11 1 2.8238 4.5936 -3.8443 12 6 1.9955 -0.7660 1.1375 13 6 1.6315 -2.2425 0.9703 14 6 2.1711 -3.0283 2.1376 15 6 3.4421 -3.5692 2.0784 16 6 3.9349 -4.2943 3.1469 17 6 3.1609 -4.4700 4.2789 18 6 1.8919 -3.9256 4.3398 19 6 1.0480 -4.1176 5.5734 20 9 1.7585 -4.8744 6.5113 21 9 0.7337 -2.8698 6.1224 22 9 -0.1318 -4.7872 5.2317 23 6 1.3971 -3.2043 3.2690 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5740 -0.8525 26 1 -0.3634 -1.0252 -0.0709 27 1 1.5610 1.9273 0.8309 28 1 3.0796 1.3445 0.1082 29 1 2.9876 4.9176 -0.7776 30 1 1.5610 -0.3872 2.0628 31 1 3.0797 -0.6610 1.1755 32 1 2.0658 -2.6213 0.0451 33 1 0.5472 -2.3475 0.9323 34 1 4.0485 -3.4281 1.1959 35 1 4.9265 -4.7198 3.0994 36 1 3.5476 -5.0331 5.1155 37 1 0.4054 -2.7792 3.3165 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209114663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:18 Heat of formation + Delta-G solvation = -148.401137 kcal Electronic energy + Delta-G solvation = -22062.837113 eV Core-core repulsion = 18196.012212 eV Total energy + Delta-G solvation = -3866.824900 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -51.21661 -48.73474 -48.68595 -40.58832 -38.43844 -35.10340 -34.01996 -32.73487 -30.20390 -28.77132 -27.07034 -26.97293 -24.47947 -23.30674 -22.29723 -21.51909 -19.53954 -19.40964 -19.07936 -18.48907 -17.25180 -16.87354 -16.56287 -16.21442 -15.81832 -15.60641 -15.39365 -15.26953 -15.12734 -15.04950 -14.86538 -14.84866 -14.16090 -14.13871 -13.98025 -13.78756 -13.57648 -13.13120 -12.89391 -12.67607 -12.61997 -12.33955 -12.24704 -12.14440 -11.93201 -11.57346 -11.27301 -10.62556 -10.18317 -9.82931 -9.04351 -8.20586 -6.30873 -0.05406 0.25563 1.42094 1.42470 1.56339 1.61917 2.40344 2.48076 2.68312 2.98083 3.12093 3.30463 3.38845 3.84058 3.86660 4.04454 4.15168 4.28019 4.35579 4.42389 4.56124 4.61053 4.66453 4.76899 4.91211 4.98924 5.05193 5.14714 5.17438 5.22590 5.33100 5.34112 5.55734 5.65609 5.81446 6.04603 6.31111 6.62278 6.85899 7.39152 8.90922 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.029511 B = 0.002982 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.573972 B = 9388.886799 C = 9657.446335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.547 5.547 3 C 0.205 3.795 4 C -0.522 4.522 5 H 0.066 0.934 6 C -0.001 4.001 7 N -0.936 5.936 8 Si 0.971 3.029 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.278 1.278 12 C 0.063 3.937 13 C -0.065 4.065 14 C -0.085 4.085 15 C -0.086 4.086 16 C -0.113 4.113 17 C -0.082 4.082 18 C -0.195 4.195 19 C 0.511 3.489 20 F -0.176 7.176 21 F -0.185 7.185 22 F -0.181 7.181 23 C -0.080 4.080 24 H 0.007 0.993 25 H 0.057 0.943 26 H 0.085 0.915 27 H -0.041 1.041 28 H 0.004 0.996 29 H 0.264 0.736 30 H 0.016 0.984 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.148 0.852 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.291 -20.254 10.178 22.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.271 5.271 3 C 0.079 3.921 4 C -0.561 4.561 5 H 0.084 0.916 6 C -0.198 4.198 7 N -0.577 5.577 8 Si 0.796 3.204 9 H -0.185 1.185 10 H -0.206 1.206 11 H -0.204 1.204 12 C -0.065 4.065 13 C -0.103 4.103 14 C -0.085 4.085 15 C -0.104 4.104 16 C -0.131 4.131 17 C -0.100 4.100 18 C -0.196 4.196 19 C 0.457 3.543 20 F -0.157 7.157 21 F -0.166 7.166 22 F -0.162 7.162 23 C -0.098 4.098 24 H 0.025 0.975 25 H 0.076 0.924 26 H 0.104 0.896 27 H -0.023 1.023 28 H 0.022 0.978 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.165 0.835 35 H 0.182 0.818 36 H 0.172 0.828 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.089 -20.324 9.817 22.571 hybrid contribution -0.593 1.383 0.560 1.606 sum -0.682 -18.941 10.377 21.608 Atomic orbital electron populations 1.22286 0.87602 1.01632 0.99628 1.62045 1.08266 1.15100 1.41645 1.19407 0.93700 0.83990 0.95006 1.21517 1.34745 0.97508 1.02305 0.91611 1.25949 0.95017 0.98104 1.00774 1.70099 1.39467 1.11910 1.36222 0.85307 0.78082 0.78162 0.78898 1.18522 1.20559 1.20364 1.22059 0.99577 0.93748 0.91122 1.20528 1.01763 0.91897 0.96098 1.19916 0.95073 0.98354 0.95169 1.21657 0.94350 0.94543 0.99846 1.21505 1.01202 0.98359 0.92024 1.21278 0.91596 0.97358 0.99745 1.19999 0.97606 1.07679 0.94341 1.18354 0.78407 0.73619 0.83938 1.93154 1.78133 1.76545 1.67863 1.93213 1.93434 1.42638 1.87331 1.93205 1.49938 1.80868 1.92230 1.20877 1.00488 0.96353 0.92068 0.97452 0.92420 0.89645 1.02345 0.97791 0.92700 0.96614 0.92058 0.89165 0.90109 0.83472 0.81782 0.82801 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.38 9.14 127.69 1.17 2.55 16 2 N -0.55 -23.23 4.75 -927.06 -4.41 -27.64 16 3 C 0.21 11.03 4.72 85.56 0.40 11.44 16 4 C -0.52 -29.61 8.46 25.60 0.22 -29.40 16 5 H 0.07 3.63 7.12 -2.91 -0.02 3.61 16 6 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 7 N -0.94 -56.64 13.29 21.45 0.28 -56.35 16 8 Si 0.97 44.11 29.54 68.60 2.03 46.13 16 9 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 12 C 0.06 2.18 4.94 86.30 0.43 2.61 16 13 C -0.07 -1.66 5.27 29.85 0.16 -1.51 16 14 C -0.08 -1.90 5.13 -19.86 -0.10 -2.00 16 15 C -0.09 -1.60 9.70 22.27 0.22 -1.39 16 16 C -0.11 -1.73 10.05 22.27 0.22 -1.50 16 17 C -0.08 -1.38 9.43 22.27 0.21 -1.17 16 18 C -0.19 -4.06 5.37 -19.86 -0.11 -4.17 16 19 C 0.51 10.83 3.32 71.24 0.24 11.06 16 20 F -0.18 -3.45 15.97 44.97 0.72 -2.73 16 21 F -0.18 -4.41 17.24 44.97 0.78 -3.64 16 22 F -0.18 -3.99 17.24 44.97 0.78 -3.21 16 23 C -0.08 -1.79 9.25 22.27 0.21 -1.59 16 24 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 25 H 0.06 2.35 6.76 -2.39 -0.02 2.34 16 26 H 0.09 2.53 6.47 -2.39 -0.02 2.52 16 27 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 28 H 0.00 0.23 7.93 -2.39 -0.02 0.21 16 29 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 30 H 0.02 0.56 8.12 -2.38 -0.02 0.54 16 31 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 32 H 0.09 2.21 8.09 -2.39 -0.02 2.19 16 33 H 0.08 1.93 6.50 -2.39 -0.02 1.91 16 34 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 35 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.15 1.95 7.16 -2.91 -0.02 1.93 16 37 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -64.98 324.41 4.97 -60.02 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: 1.08 Total: 2.06 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 3.72 Total: -14.64 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -4.12 Total: -83.99 kcal Atomic # 9 Polarization: -11.85 SS G_CDS: 2.27 Total: -9.58 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -64.98 4.97 -60.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209114663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.382 kcal (2) G-P(sol) polarization free energy of solvation -64.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds