Wall clock time and date at job start Tue Mar 31 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46900 * 109.47394 * 2 1 4 4 C 1.46902 * 110.99738 * 297.73014 * 3 2 1 5 5 C 1.50707 * 109.46966 * 292.89640 * 4 3 2 6 6 H 1.08003 * 119.99926 * 354.98087 * 5 4 3 7 7 C 1.37878 * 119.99730 * 174.97600 * 5 4 3 8 8 N 1.31507 * 120.00109 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99628 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46961 * 90.00418 * 9 7 5 11 11 H 1.48501 * 109.46768 * 210.00201 * 9 7 5 12 12 H 1.48500 * 109.46954 * 329.99939 * 9 7 5 13 13 C 1.46899 * 111.00331 * 61.67911 * 3 2 1 14 14 C 1.53006 * 109.47005 * 66.04782 * 13 3 2 15 15 C 1.50693 * 109.47222 * 179.97438 * 14 13 3 16 16 C 1.38239 * 119.98292 * 265.02511 * 15 14 13 17 17 C 1.38363 * 120.02685 * 179.69952 * 16 15 14 18 18 F 1.35103 * 120.00826 * 180.30209 * 17 16 15 19 19 C 1.38684 * 119.97745 * 0.57654 * 17 16 15 20 20 F 1.35098 * 120.01919 * 179.69602 * 19 17 16 21 21 C 1.38354 * 119.95877 * 359.42509 * 19 17 16 22 22 C 1.38426 * 119.97689 * 85.00410 * 15 14 13 23 23 F 1.35102 * 119.98553 * 0.02562 * 22 15 14 24 24 H 1.08999 * 109.47393 * 179.65273 * 1 2 3 25 25 H 1.09000 * 109.47287 * 299.65418 * 1 2 3 26 26 H 1.09003 * 109.47233 * 59.65394 * 1 2 3 27 27 H 1.08993 * 109.47324 * 239.99556 * 2 1 3 28 28 H 1.09000 * 109.46981 * 119.99483 * 2 1 3 29 29 H 1.09004 * 109.47307 * 52.89255 * 4 3 2 30 30 H 1.09001 * 109.47545 * 172.90009 * 4 3 2 31 31 H 0.97005 * 119.99748 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.47157 * 306.05267 * 13 3 2 33 33 H 1.08993 * 109.47636 * 186.05038 * 13 3 2 34 34 H 1.09001 * 109.46579 * 59.99845 * 14 13 3 35 35 H 1.08993 * 109.47133 * 300.00564 * 14 13 3 36 36 H 1.08004 * 119.98697 * 0.02562 * 16 15 14 37 37 H 1.07998 * 120.01472 * 180.29782 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5935 2.0940 -1.2140 5 6 2.2812 1.4943 -2.4135 6 1 3.0264 0.7242 -2.2797 7 6 1.9587 1.9289 -3.6816 8 7 1.0516 2.8669 -3.8445 9 14 2.8106 1.1850 -5.1685 10 1 2.0387 0.0091 -5.6443 11 1 2.8885 2.1974 -6.2521 12 1 4.1817 0.7575 -4.7909 13 6 1.5818 2.0983 1.2072 14 6 2.2478 1.4767 2.4366 15 6 1.7992 2.2088 3.6750 16 6 2.5686 3.2371 4.1865 17 6 2.1544 3.9140 5.3199 18 9 2.9036 4.9229 5.8160 19 6 0.9729 3.5527 5.9498 20 9 0.5708 4.2090 7.0601 21 6 0.2034 2.5235 5.4373 22 6 0.6166 1.8515 4.2994 23 9 -0.1345 0.8463 3.7986 24 1 -0.3634 -1.0276 -0.0062 25 1 -0.3634 0.5084 0.8931 26 1 -0.3634 0.5192 -0.8869 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5137 2.0000 -1.3295 30 1 1.8598 3.1478 -1.1317 31 1 0.8250 3.1729 -4.7367 32 1 0.4988 2.0205 1.3025 33 1 1.8655 3.1479 1.1321 34 1 3.3309 1.5545 2.3412 35 1 1.9642 0.4270 2.5117 36 1 3.4908 3.5157 3.6982 37 1 -0.7193 2.2446 5.9243 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209249626.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:19 Heat of formation + Delta-G solvation = -112.139549 kcal Electronic energy + Delta-G solvation = -22466.783690 eV Core-core repulsion = 18601.531210 eV Total energy + Delta-G solvation = -3865.252480 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.74847 -49.18439 -48.81698 -39.26836 -37.39977 -33.41393 -32.40201 -30.72444 -29.54364 -28.50109 -26.00568 -23.91033 -23.57786 -22.96322 -21.41622 -19.14060 -18.53167 -18.12601 -17.47859 -16.70318 -16.21203 -15.99703 -15.67450 -15.30149 -15.22467 -15.08161 -14.82618 -14.53845 -14.38036 -13.99006 -13.52176 -13.17855 -12.76307 -12.49912 -12.25286 -12.21136 -11.85579 -11.55027 -11.43991 -11.24603 -10.95823 -10.69098 -10.64744 -10.49052 -10.03805 -9.74912 -9.40737 -9.20383 -8.73155 -8.44107 -7.22316 -6.03270 -4.04364 0.47614 0.54447 2.86506 3.31004 3.35821 3.37577 3.41581 3.72638 4.12124 4.13859 4.30679 4.44140 4.67542 5.02177 5.21570 5.23424 5.32157 5.43938 5.48765 5.52410 5.64568 5.74373 5.83312 5.89365 5.98976 6.14414 6.26843 6.35025 6.42690 6.50353 6.69782 6.91125 7.28996 7.43148 7.80030 8.08152 8.17494 8.53698 9.03780 9.59893 11.07381 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.027199 B = 0.003482 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.197118 B = 8039.035891 C = 8577.949909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.059 3.941 3 N -0.534 5.534 4 C 0.188 3.812 5 C -0.505 4.505 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.056 3.944 14 C -0.081 4.081 15 C -0.083 4.083 16 C -0.093 4.093 17 C 0.061 3.939 18 F -0.125 7.125 19 C 0.087 3.913 20 F -0.124 7.124 21 C -0.163 4.163 22 C 0.123 3.877 23 F -0.121 7.121 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.004 0.996 30 H 0.024 0.976 31 H 0.261 0.739 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.160 0.840 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.420 -1.317 18.931 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.070 4.070 3 N -0.258 5.258 4 C 0.063 3.937 5 C -0.544 4.544 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.072 4.072 14 C -0.118 4.118 15 C -0.084 4.084 16 C -0.112 4.112 17 C 0.041 3.959 18 F -0.104 7.104 19 C 0.066 3.934 20 F -0.102 7.102 21 C -0.182 4.182 22 C 0.103 3.897 23 F -0.099 7.099 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.022 0.978 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.177 0.823 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.001 -1.187 18.816 18.854 hybrid contribution -0.730 -0.082 -0.614 0.957 sum -0.732 -1.268 18.202 18.261 Atomic orbital electron populations 1.22386 0.99401 1.01013 1.02045 1.21996 0.92167 0.91490 1.01299 1.62349 1.59125 1.01968 1.02323 1.19793 0.94869 0.93656 0.85356 1.21146 1.21846 1.21310 0.90055 0.91890 1.24980 0.95317 0.95251 0.99056 1.69955 1.32183 1.29200 1.22554 0.86527 0.80022 0.78754 0.82299 1.20782 1.21315 1.19766 1.22018 0.96963 0.98260 0.89995 1.20708 1.02417 0.99181 0.89522 1.20046 0.93146 0.97019 0.98233 1.20940 1.01606 0.94673 0.94005 1.17632 0.91052 0.90791 0.96437 1.91549 1.74882 1.57069 1.86876 1.17198 0.94221 0.95254 0.86699 1.91548 1.90219 1.79373 1.49093 1.20915 1.02468 0.97151 0.97695 1.17166 0.90626 0.88412 0.93470 1.91565 1.74785 1.57079 1.86475 0.93460 0.93523 0.91361 0.90077 0.92922 0.97850 0.95778 0.92963 0.95064 0.91271 0.89084 0.89983 0.82267 0.82524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.36 9.26 37.15 0.34 -3.01 16 2 C 0.06 1.09 5.67 -3.83 -0.02 1.06 16 3 N -0.53 -10.81 4.69 -236.07 -1.11 -11.92 16 4 C 0.19 4.72 4.53 -4.97 -0.02 4.69 16 5 C -0.50 -13.79 8.39 -34.44 -0.29 -14.08 16 6 H 0.06 1.71 7.38 -52.48 -0.39 1.32 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 9 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 13 C 0.06 0.94 4.73 -3.82 -0.02 0.92 16 14 C -0.08 -1.04 5.04 -27.88 -0.14 -1.18 16 15 C -0.08 -0.94 5.14 -104.56 -0.54 -1.47 16 16 C -0.09 -0.96 9.65 -39.53 -0.38 -1.34 16 17 C 0.06 0.67 7.31 -39.37 -0.29 0.38 16 18 F -0.13 -1.46 17.18 2.25 0.04 -1.43 16 19 C 0.09 0.93 7.31 -39.37 -0.29 0.64 16 20 F -0.12 -1.39 17.18 2.25 0.04 -1.35 16 21 C -0.16 -1.60 10.00 -39.46 -0.39 -1.99 16 22 C 0.12 1.38 7.24 -39.43 -0.29 1.10 16 23 F -0.12 -1.49 16.56 2.25 0.04 -1.45 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.77 6.33 -51.93 -0.33 0.45 16 26 H 0.07 1.41 6.29 -51.93 -0.33 1.08 16 27 H 0.08 1.64 6.98 -51.93 -0.36 1.28 16 28 H 0.05 0.83 6.39 -51.93 -0.33 0.50 16 29 H 0.00 0.10 6.02 -51.93 -0.31 -0.21 16 30 H 0.02 0.65 7.91 -51.93 -0.41 0.24 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.03 0.54 6.06 -51.93 -0.31 0.22 16 33 H 0.07 1.16 7.92 -51.93 -0.41 0.75 16 34 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16 35 H 0.08 1.06 6.16 -51.93 -0.32 0.74 16 36 H 0.16 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 317.55 15.07 4.79 4.79 Total: -1.00 -28.85 317.55 -7.24 -36.09 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -4.33 Total: -2.58 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -2.42 Total: -12.86 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.37 Total: -37.51 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.11 Total: -4.23 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.85 -7.24 -36.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209249626.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.046 kcal (2) G-P(sol) polarization free energy of solvation -28.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds