Wall clock time and date at job start Tue Mar 31 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46900 * 109.47394 * 2 1 4 4 C 1.46902 * 110.99738 * 297.73014 * 3 2 1 5 5 C 1.50707 * 109.46966 * 292.89640 * 4 3 2 6 6 H 1.08003 * 119.99926 * 354.98087 * 5 4 3 7 7 C 1.37878 * 119.99730 * 174.97600 * 5 4 3 8 8 N 1.31507 * 120.00109 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99628 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46961 * 90.00418 * 9 7 5 11 11 H 1.48501 * 109.46768 * 210.00201 * 9 7 5 12 12 H 1.48500 * 109.46954 * 329.99939 * 9 7 5 13 13 C 1.46899 * 111.00331 * 61.67911 * 3 2 1 14 14 C 1.53006 * 109.47005 * 66.04782 * 13 3 2 15 15 C 1.50693 * 109.47222 * 179.97438 * 14 13 3 16 16 C 1.38239 * 119.98292 * 265.02511 * 15 14 13 17 17 C 1.38363 * 120.02685 * 179.69952 * 16 15 14 18 18 F 1.35103 * 120.00826 * 180.30209 * 17 16 15 19 19 C 1.38684 * 119.97745 * 0.57654 * 17 16 15 20 20 F 1.35098 * 120.01919 * 179.69602 * 19 17 16 21 21 C 1.38354 * 119.95877 * 359.42509 * 19 17 16 22 22 C 1.38426 * 119.97689 * 85.00410 * 15 14 13 23 23 F 1.35102 * 119.98553 * 0.02562 * 22 15 14 24 24 H 1.08999 * 109.47393 * 179.65273 * 1 2 3 25 25 H 1.09000 * 109.47287 * 299.65418 * 1 2 3 26 26 H 1.09003 * 109.47233 * 59.65394 * 1 2 3 27 27 H 1.08993 * 109.47324 * 239.99556 * 2 1 3 28 28 H 1.09000 * 109.46981 * 119.99483 * 2 1 3 29 29 H 1.09004 * 109.47307 * 52.89255 * 4 3 2 30 30 H 1.09001 * 109.47545 * 172.90009 * 4 3 2 31 31 H 0.97005 * 119.99748 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.47157 * 306.05267 * 13 3 2 33 33 H 1.08993 * 109.47636 * 186.05038 * 13 3 2 34 34 H 1.09001 * 109.46579 * 59.99845 * 14 13 3 35 35 H 1.08993 * 109.47133 * 300.00564 * 14 13 3 36 36 H 1.08004 * 119.98697 * 0.02562 * 16 15 14 37 37 H 1.07998 * 120.01472 * 180.29782 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5935 2.0940 -1.2140 5 6 2.2812 1.4943 -2.4135 6 1 3.0264 0.7242 -2.2797 7 6 1.9587 1.9289 -3.6816 8 7 1.0516 2.8669 -3.8445 9 14 2.8106 1.1850 -5.1685 10 1 2.0387 0.0091 -5.6443 11 1 2.8885 2.1974 -6.2521 12 1 4.1817 0.7575 -4.7909 13 6 1.5818 2.0983 1.2072 14 6 2.2478 1.4767 2.4366 15 6 1.7992 2.2088 3.6750 16 6 2.5686 3.2371 4.1865 17 6 2.1544 3.9140 5.3199 18 9 2.9036 4.9229 5.8160 19 6 0.9729 3.5527 5.9498 20 9 0.5708 4.2090 7.0601 21 6 0.2034 2.5235 5.4373 22 6 0.6166 1.8515 4.2994 23 9 -0.1345 0.8463 3.7986 24 1 -0.3634 -1.0276 -0.0062 25 1 -0.3634 0.5084 0.8931 26 1 -0.3634 0.5192 -0.8869 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5137 2.0000 -1.3295 30 1 1.8598 3.1478 -1.1317 31 1 0.8250 3.1729 -4.7367 32 1 0.4988 2.0205 1.3025 33 1 1.8655 3.1479 1.1321 34 1 3.3309 1.5545 2.3412 35 1 1.9642 0.4270 2.5117 36 1 3.4908 3.5157 3.6982 37 1 -0.7193 2.2446 5.9243 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209249626.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:18 Heat of formation + Delta-G solvation = -127.838267 kcal Electronic energy + Delta-G solvation = -22467.464437 eV Core-core repulsion = 18601.531210 eV Total energy + Delta-G solvation = -3865.933227 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.61807 -50.09272 -49.69205 -40.20761 -38.88878 -34.98742 -33.98524 -31.60298 -31.04789 -29.93690 -27.64222 -25.22606 -24.74666 -24.33089 -22.60657 -20.66832 -19.39737 -19.00490 -18.38639 -18.32679 -17.57039 -17.05009 -16.83005 -16.58348 -16.47961 -16.12882 -16.07306 -15.72302 -15.37517 -15.03831 -14.86261 -14.77010 -13.96811 -13.87315 -13.64006 -13.29278 -13.26065 -13.08877 -12.74361 -12.66743 -12.53487 -12.32692 -12.18451 -12.06162 -11.82592 -11.30342 -11.21394 -10.57076 -10.21309 -9.65135 -8.90322 -8.16346 -6.25408 -0.39897 -0.26498 1.43054 1.43868 1.55356 2.01190 2.42890 2.52206 2.87552 3.16657 3.19048 3.27983 3.38919 3.65823 3.87406 4.09185 4.29532 4.33283 4.41112 4.49226 4.57152 4.59001 4.68213 4.73082 4.76734 4.83538 4.96249 5.05546 5.14159 5.23966 5.26737 5.42554 5.52782 5.57554 5.71548 6.11750 6.39353 6.69733 6.91962 7.44107 8.94209 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.027199 B = 0.003482 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.197118 B = 8039.035891 C = 8577.949909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.059 3.941 3 N -0.539 5.539 4 C 0.202 3.798 5 C -0.517 4.517 6 H 0.063 0.937 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.965 3.035 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.264 1.264 13 C 0.058 3.942 14 C -0.068 4.068 15 C -0.089 4.089 16 C -0.085 4.085 17 C 0.054 3.946 18 F -0.131 7.131 19 C 0.085 3.915 20 F -0.127 7.127 21 C -0.152 4.152 22 C 0.117 3.883 23 F -0.128 7.128 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.088 0.912 29 H -0.022 1.022 30 H -0.003 1.003 31 H 0.262 0.738 32 H 0.025 0.975 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.175 0.825 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.198 -2.430 19.929 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.069 4.069 3 N -0.262 5.262 4 C 0.076 3.924 5 C -0.555 4.555 6 H 0.081 0.919 7 C -0.196 4.196 8 N -0.577 5.577 9 Si 0.790 3.210 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.188 1.188 13 C -0.071 4.071 14 C -0.105 4.105 15 C -0.090 4.090 16 C -0.104 4.104 17 C 0.034 3.966 18 F -0.110 7.110 19 C 0.065 3.935 20 F -0.106 7.106 21 C -0.171 4.171 22 C 0.098 3.902 23 F -0.106 7.106 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.106 0.894 29 H -0.004 1.004 30 H 0.015 0.985 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.192 0.808 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.623 -2.313 19.840 19.984 hybrid contribution -0.953 0.291 -0.834 1.299 sum -0.330 -2.022 19.006 19.116 Atomic orbital electron populations 1.22273 0.98862 1.02103 1.00630 1.22045 0.92601 0.90331 1.01959 1.62244 1.59384 1.02763 1.01821 1.19430 0.93081 0.92536 0.87346 1.21465 1.21765 1.21149 0.91139 0.91909 1.25862 0.95947 0.95610 1.02199 1.70085 1.33686 1.30637 1.23275 0.85451 0.79208 0.77975 0.78408 1.20004 1.21057 1.18799 1.22054 0.97018 0.97969 0.90029 1.20515 1.02614 0.99187 0.88177 1.19888 0.93654 0.97546 0.97954 1.21040 1.01906 0.93871 0.93575 1.17742 0.91231 0.90864 0.96757 1.91536 1.75073 1.57371 1.86983 1.17303 0.94253 0.95384 0.86588 1.91544 1.90248 1.79485 1.49287 1.21047 1.02910 0.96181 0.96980 1.17275 0.90558 0.88490 0.93926 1.91548 1.74976 1.57427 1.86646 0.91047 0.92469 0.95164 0.92185 0.89374 1.00385 0.98532 0.92884 0.95644 0.92030 0.88082 0.89498 0.80750 0.80304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.26 9.26 71.98 0.67 -5.59 16 2 C 0.06 2.10 5.67 86.30 0.49 2.59 16 3 N -0.54 -21.78 4.69 -900.80 -4.23 -26.01 16 4 C 0.20 10.47 4.53 85.56 0.39 10.85 16 5 C -0.52 -28.68 8.39 25.60 0.21 -28.47 16 6 H 0.06 3.41 7.38 -2.91 -0.02 3.39 16 7 C 0.00 0.08 5.46 84.66 0.46 0.55 16 8 N -0.94 -56.00 13.29 21.45 0.28 -55.72 16 9 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 13 C 0.06 1.88 4.73 86.31 0.41 2.29 16 14 C -0.07 -1.60 5.04 29.85 0.15 -1.45 16 15 C -0.09 -1.84 5.14 -19.82 -0.10 -1.94 16 16 C -0.09 -1.59 9.65 22.30 0.22 -1.38 16 17 C 0.05 1.10 7.31 22.41 0.16 1.26 16 18 F -0.13 -2.89 17.18 44.97 0.77 -2.12 16 19 C 0.09 1.66 7.31 22.40 0.16 1.82 16 20 F -0.13 -2.64 17.18 44.97 0.77 -1.87 16 21 C -0.15 -2.64 10.00 22.35 0.22 -2.42 16 22 C 0.12 2.39 7.24 22.37 0.16 2.55 16 23 F -0.13 -2.89 16.56 44.97 0.74 -2.14 16 24 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.06 1.84 6.33 -2.39 -0.02 1.83 16 26 H 0.03 1.27 6.29 -2.39 -0.02 1.25 16 27 H 0.06 2.41 6.98 -2.39 -0.02 2.39 16 28 H 0.09 2.56 6.39 -2.39 -0.02 2.54 16 29 H -0.02 -1.21 6.02 -2.39 -0.01 -1.22 16 30 H 0.00 -0.19 7.91 -2.39 -0.02 -0.21 16 31 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 32 H 0.03 0.86 6.06 -2.39 -0.01 0.85 16 33 H 0.06 2.08 7.92 -2.39 -0.02 2.06 16 34 H 0.10 2.22 8.05 -2.39 -0.02 2.20 16 35 H 0.09 1.99 6.16 -2.39 -0.01 1.98 16 36 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -62.55 317.55 5.08 -57.48 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.10 Total: 3.83 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 3.61 Total: -19.33 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -3.94 Total: -81.73 kcal Atomic # 9 Polarization: -8.42 SS G_CDS: 2.29 Total: -6.13 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -62.55 5.08 -57.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209249626.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.363 kcal (2) G-P(sol) polarization free energy of solvation -62.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds