Wall clock time and date at job start Tue Mar 31 2020 06:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21281 * 119.99871 * 2 1 4 4 N 1.34778 * 120.00266 * 179.97438 * 2 1 3 5 5 C 1.46986 * 121.33405 * 354.47443 * 4 2 1 6 6 C 1.50347 * 109.15469 * 223.24315 * 5 4 2 7 7 C 1.31210 * 123.41893 * 348.95566 * 6 5 4 8 8 C 1.47683 * 117.81924 * 180.81450 * 7 6 5 9 9 C 1.39501 * 120.18060 * 104.71816 * 8 7 6 10 10 C 1.37948 * 119.91998 * 179.74686 * 9 8 7 11 11 C 1.38478 * 120.30154 * 0.56281 * 10 9 8 12 12 C 1.38120 * 120.36360 * 359.69262 * 11 10 9 13 13 C 1.38728 * 120.06981 * 0.02692 * 12 11 10 14 14 O 1.35647 * 120.14878 * 179.97438 * 13 12 11 15 15 C 1.34805 * 116.99946 * 5.19672 * 14 13 12 16 16 H 1.08007 * 120.00096 * 354.98012 * 15 14 13 17 17 C 1.38645 * 120.00394 * 174.97559 * 15 14 13 18 18 N 1.31556 * 119.99866 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00425 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47135 * 60.00207 * 19 17 15 21 21 H 1.48497 * 109.47455 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47219 * 300.00389 * 19 17 15 23 23 C 1.49990 * 124.37089 * 0.81802 * 7 6 5 24 24 C 1.47313 * 121.33362 * 174.45404 * 4 2 1 25 25 H 1.09002 * 109.46933 * 184.84606 * 1 2 3 26 26 H 1.09000 * 109.47269 * 304.84550 * 1 2 3 27 27 H 1.09000 * 109.47240 * 64.84596 * 1 2 3 28 28 H 1.08996 * 109.52417 * 343.14647 * 5 4 2 29 29 H 1.08996 * 109.52617 * 103.33966 * 5 4 2 30 30 H 1.07996 * 118.28893 * 168.93359 * 6 5 4 31 31 H 1.07999 * 120.03924 * 0.02562 * 9 8 7 32 32 H 1.08008 * 119.85295 * 180.25588 * 10 9 8 33 33 H 1.07995 * 119.82328 * 179.71760 * 11 10 9 34 34 H 1.08003 * 119.96637 * 180.02562 * 12 11 10 35 35 H 0.97003 * 120.00296 * 179.97438 * 18 17 15 36 36 H 1.08997 * 109.31919 * 220.72305 * 23 7 6 37 37 H 1.09004 * 109.31855 * 101.29283 * 23 7 6 38 38 H 1.08997 * 109.76103 * 237.34050 * 24 4 2 39 39 H 1.09000 * 109.76280 * 358.10752 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4809 -2.4539 0.1220 6 6 2.2328 -3.3360 1.0796 7 6 3.4358 -3.0595 1.5244 8 6 4.0674 -4.0231 2.4483 9 6 5.0814 -4.8674 1.9954 10 6 5.6713 -5.7618 2.8643 11 6 5.2537 -5.8343 4.1826 12 6 4.2471 -5.0078 4.6425 13 6 3.6473 -4.0986 3.7833 14 8 2.6583 -3.2865 4.2331 15 6 2.3776 -3.3359 5.5507 16 1 2.8739 -4.0583 6.1819 17 6 1.4519 -2.4594 6.0957 18 7 0.8470 -1.5798 5.3269 19 14 1.0635 -2.5274 7.9216 20 1 2.3015 -2.2717 8.7009 21 1 0.0487 -1.4943 8.2507 22 1 0.5311 -3.8705 8.2648 23 6 4.2124 -1.8299 1.1573 24 6 3.6485 -1.2044 -0.1211 25 1 -0.3633 -1.0240 0.0868 26 1 -0.3634 0.5872 0.8434 27 1 -0.3634 0.4368 -0.9302 28 1 0.4717 -2.2856 0.4976 29 1 1.4316 -2.9354 -0.8546 30 1 1.7577 -4.2445 1.4194 31 1 5.4073 -4.8177 0.9670 32 1 6.4592 -6.4121 2.5136 33 1 5.7177 -6.5405 4.8550 34 1 3.9267 -5.0694 5.6720 35 1 0.1990 -0.9667 5.7081 36 1 5.2569 -2.0975 0.9974 37 1 4.1489 -1.1071 1.9707 38 1 3.9317 -1.8085 -0.9830 39 1 4.0345 -0.1917 -0.2372 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241968806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:27 Heat of formation + Delta-G solvation = -16.728568 kcal Electronic energy + Delta-G solvation = -22693.186307 eV Core-core repulsion = 19373.927898 eV Total energy + Delta-G solvation = -3319.258409 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.90729 -39.06256 -37.07363 -36.23962 -33.39081 -32.30128 -31.33659 -29.79964 -29.05049 -28.53957 -25.42206 -25.02614 -23.20521 -21.63624 -21.27278 -19.77537 -17.97615 -17.60222 -17.13539 -16.29979 -15.72921 -15.25275 -14.95670 -14.64912 -14.44859 -13.86076 -13.75899 -13.62205 -13.35282 -13.22462 -13.09782 -12.68209 -12.60095 -12.18690 -11.78712 -11.74134 -11.59411 -11.37171 -11.31278 -10.94409 -10.86138 -10.74687 -10.51636 -10.32048 -9.58755 -9.37916 -8.87137 -8.48390 -8.36801 -7.98793 -7.22764 -6.47654 -4.06490 2.02436 2.34941 2.72753 2.87878 3.10341 3.12017 3.14289 3.24422 3.93384 4.49496 4.80430 5.03702 5.09614 5.19630 5.22810 5.32290 5.42884 5.52769 5.55659 5.60400 5.62620 5.69610 5.77764 5.91099 5.93671 6.00528 6.07292 6.20921 6.31036 6.43331 6.65770 6.68887 6.80063 6.91886 7.04003 7.22329 7.33304 7.35479 7.47846 7.69188 7.78053 7.95757 8.40483 8.97399 9.67233 10.69124 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.011474 B = 0.006890 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.650600 B = 4062.686082 C = 6047.559870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.521 3.479 3 O -0.556 6.556 4 N -0.611 5.611 5 C 0.146 3.854 6 C -0.175 4.175 7 C -0.031 4.031 8 C -0.142 4.142 9 C -0.063 4.063 10 C -0.216 4.216 11 C -0.072 4.072 12 C -0.235 4.235 13 C 0.163 3.837 14 O -0.164 6.164 15 C -0.396 4.396 16 H 0.090 0.910 17 C 0.043 3.957 18 N -0.856 5.856 19 Si 0.938 3.062 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.094 4.094 24 C 0.115 3.885 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.127 0.873 35 H 0.270 0.730 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.610 -3.828 -9.145 10.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.310 3.690 3 O -0.435 6.435 4 N -0.345 5.345 5 C 0.024 3.976 6 C -0.193 4.193 7 C -0.031 4.031 8 C -0.143 4.143 9 C -0.081 4.081 10 C -0.235 4.235 11 C -0.091 4.091 12 C -0.254 4.254 13 C 0.108 3.892 14 O -0.066 6.066 15 C -0.472 4.472 16 H 0.107 0.893 17 C -0.162 4.162 18 N -0.490 5.490 19 Si 0.762 3.238 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.195 1.195 23 C -0.132 4.132 24 C -0.008 4.008 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.145 0.855 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.569 -2.892 -9.224 9.793 hybrid contribution -0.160 -0.342 1.309 1.363 sum 1.409 -3.234 -7.915 8.665 Atomic orbital electron populations 1.21978 0.91969 1.04806 1.04826 1.20689 0.90581 0.82807 0.74902 1.90669 1.70775 1.31100 1.50956 1.48199 1.07528 1.06286 1.72457 1.20593 0.96395 0.82388 0.98194 1.22400 0.95534 1.00884 1.00495 1.19134 0.94698 0.93937 0.95357 1.18062 1.02158 1.02274 0.91816 1.20687 0.94485 0.94665 0.98259 1.20504 1.04554 1.04016 0.94414 1.20803 0.95727 0.97276 0.95252 1.21122 1.02129 1.01150 1.01045 1.19413 0.87908 0.89977 0.91900 1.83978 1.43215 1.53283 1.26160 1.21272 1.24867 1.19679 0.81409 0.89265 1.25241 0.95903 0.94933 1.00109 1.70032 1.25017 1.18225 1.35705 0.85836 0.78684 0.78441 0.80815 1.19528 1.20249 1.19525 1.20715 0.98881 0.95740 0.97845 1.21627 0.79694 1.02219 0.97228 0.89924 0.88639 0.89119 0.88662 0.90935 0.86623 0.87066 0.87631 0.87593 0.85545 0.92014 0.90341 0.90050 0.91325 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 10.09 36.00 0.36 -1.88 16 2 C 0.52 8.83 7.82 -10.99 -0.09 8.74 16 3 O -0.56 -11.43 16.60 5.56 0.09 -11.33 16 4 N -0.61 -9.72 2.96 -174.16 -0.52 -10.23 16 5 C 0.15 2.07 6.36 -5.10 -0.03 2.04 16 6 C -0.17 -3.05 9.54 -36.25 -0.35 -3.40 16 7 C -0.03 -0.58 4.78 -102.88 -0.49 -1.07 16 8 C -0.14 -2.88 5.01 -104.85 -0.53 -3.41 16 9 C -0.06 -1.10 9.78 -39.22 -0.38 -1.48 16 10 C -0.22 -3.66 10.03 -39.60 -0.40 -4.05 16 11 C -0.07 -1.31 10.03 -39.54 -0.40 -1.71 16 12 C -0.24 -5.04 9.16 -39.44 -0.36 -5.41 16 13 C 0.16 3.83 6.64 -38.68 -0.26 3.57 16 14 O -0.16 -4.50 9.19 0.44 0.00 -4.50 16 15 C -0.40 -10.84 9.49 30.88 0.29 -10.55 16 16 H 0.09 2.27 5.20 -52.48 -0.27 2.00 16 17 C 0.04 1.17 5.49 -17.52 -0.10 1.07 16 18 N -0.86 -24.51 13.67 55.48 0.76 -23.76 16 19 Si 0.94 20.33 29.55 -169.99 -5.02 15.30 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 C -0.09 -1.61 5.95 -28.18 -0.17 -1.78 16 24 C 0.11 1.73 6.48 -3.55 -0.02 1.71 16 25 H 0.08 0.91 5.34 -51.93 -0.28 0.63 16 26 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.10 1.27 5.57 -51.93 -0.29 0.98 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.12 2.09 7.94 -52.49 -0.42 1.68 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 33 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.13 2.72 5.63 -52.48 -0.30 2.42 16 35 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 37 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.43 7.09 -51.93 -0.37 1.06 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -32.52 328.06 -7.51 -40.03 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.86 Total: 7.14 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -2.91 Total: -17.59 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.24 Total: -33.99 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.10 Total: -15.83 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.52 -7.51 -40.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241968806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.297 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds