Wall clock time and date at job start Tue Mar 31 2020 06:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21281 * 119.99871 * 2 1 4 4 N 1.34778 * 120.00266 * 179.97438 * 2 1 3 5 5 C 1.46986 * 121.33405 * 354.47443 * 4 2 1 6 6 C 1.50347 * 109.15469 * 223.24315 * 5 4 2 7 7 C 1.31210 * 123.41893 * 348.95566 * 6 5 4 8 8 C 1.47683 * 117.81924 * 180.81450 * 7 6 5 9 9 C 1.39501 * 120.18060 * 104.71816 * 8 7 6 10 10 C 1.37948 * 119.91998 * 179.74686 * 9 8 7 11 11 C 1.38478 * 120.30154 * 0.56281 * 10 9 8 12 12 C 1.38120 * 120.36360 * 359.69262 * 11 10 9 13 13 C 1.38728 * 120.06981 * 0.02692 * 12 11 10 14 14 O 1.35647 * 120.14878 * 179.97438 * 13 12 11 15 15 C 1.34805 * 116.99946 * 5.19672 * 14 13 12 16 16 H 1.08007 * 120.00096 * 354.98012 * 15 14 13 17 17 C 1.38645 * 120.00394 * 174.97559 * 15 14 13 18 18 N 1.31556 * 119.99866 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00425 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47135 * 60.00207 * 19 17 15 21 21 H 1.48497 * 109.47455 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47219 * 300.00389 * 19 17 15 23 23 C 1.49990 * 124.37089 * 0.81802 * 7 6 5 24 24 C 1.47313 * 121.33362 * 174.45404 * 4 2 1 25 25 H 1.09002 * 109.46933 * 184.84606 * 1 2 3 26 26 H 1.09000 * 109.47269 * 304.84550 * 1 2 3 27 27 H 1.09000 * 109.47240 * 64.84596 * 1 2 3 28 28 H 1.08996 * 109.52417 * 343.14647 * 5 4 2 29 29 H 1.08996 * 109.52617 * 103.33966 * 5 4 2 30 30 H 1.07996 * 118.28893 * 168.93359 * 6 5 4 31 31 H 1.07999 * 120.03924 * 0.02562 * 9 8 7 32 32 H 1.08008 * 119.85295 * 180.25588 * 10 9 8 33 33 H 1.07995 * 119.82328 * 179.71760 * 11 10 9 34 34 H 1.08003 * 119.96637 * 180.02562 * 12 11 10 35 35 H 0.97003 * 120.00296 * 179.97438 * 18 17 15 36 36 H 1.08997 * 109.31919 * 220.72305 * 23 7 6 37 37 H 1.09004 * 109.31855 * 101.29283 * 23 7 6 38 38 H 1.08997 * 109.76103 * 237.34050 * 24 4 2 39 39 H 1.09000 * 109.76280 * 358.10752 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4809 -2.4539 0.1220 6 6 2.2328 -3.3360 1.0796 7 6 3.4358 -3.0595 1.5244 8 6 4.0674 -4.0231 2.4483 9 6 5.0814 -4.8674 1.9954 10 6 5.6713 -5.7618 2.8643 11 6 5.2537 -5.8343 4.1826 12 6 4.2471 -5.0078 4.6425 13 6 3.6473 -4.0986 3.7833 14 8 2.6583 -3.2865 4.2331 15 6 2.3776 -3.3359 5.5507 16 1 2.8739 -4.0583 6.1819 17 6 1.4519 -2.4594 6.0957 18 7 0.8470 -1.5798 5.3269 19 14 1.0635 -2.5274 7.9216 20 1 2.3015 -2.2717 8.7009 21 1 0.0487 -1.4943 8.2507 22 1 0.5311 -3.8705 8.2648 23 6 4.2124 -1.8299 1.1573 24 6 3.6485 -1.2044 -0.1211 25 1 -0.3633 -1.0240 0.0868 26 1 -0.3634 0.5872 0.8434 27 1 -0.3634 0.4368 -0.9302 28 1 0.4717 -2.2856 0.4976 29 1 1.4316 -2.9354 -0.8546 30 1 1.7577 -4.2445 1.4194 31 1 5.4073 -4.8177 0.9670 32 1 6.4592 -6.4121 2.5136 33 1 5.7177 -6.5405 4.8550 34 1 3.9267 -5.0694 5.6720 35 1 0.1990 -0.9667 5.7081 36 1 5.2569 -2.0975 0.9974 37 1 4.1489 -1.1071 1.9707 38 1 3.9317 -1.8085 -0.9830 39 1 4.0345 -0.1917 -0.2372 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241968806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:27 Heat of formation + Delta-G solvation = -36.589766 kcal Electronic energy + Delta-G solvation = -22694.047553 eV Core-core repulsion = 19373.927898 eV Total energy + Delta-G solvation = -3320.119655 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27268 -40.64569 -38.58109 -37.81297 -34.79229 -34.24291 -32.60050 -31.21887 -30.48638 -29.90520 -27.34958 -26.36250 -24.49605 -23.22549 -22.81340 -21.10596 -19.78246 -19.15223 -18.46768 -17.82826 -17.03027 -16.55996 -16.47914 -16.34659 -16.06171 -15.49041 -15.26308 -15.06596 -14.80370 -14.61043 -14.34442 -14.30397 -13.86632 -13.57376 -13.41486 -13.00975 -12.94403 -12.86197 -12.68326 -12.51074 -12.40438 -12.21771 -12.12168 -11.83397 -11.13421 -10.92677 -10.79629 -9.88941 -9.69779 -9.44990 -8.90325 -8.45551 -6.12149 0.50217 0.77841 1.30285 1.32397 1.42277 1.47121 1.57124 2.05213 2.15782 2.84245 3.16466 3.52820 3.61335 3.79579 4.00724 4.05628 4.16467 4.24582 4.27925 4.33938 4.43145 4.56554 4.59461 4.62012 4.64444 4.73333 4.78420 4.81405 5.01707 5.07840 5.12262 5.14899 5.31188 5.45527 5.47344 5.67908 5.76183 5.79397 6.01300 6.07705 6.27356 6.43217 6.99075 7.11413 7.81595 8.75670 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.011474 B = 0.006890 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.650600 B = 4062.686082 C = 6047.559870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.507 3.493 3 O -0.603 6.603 4 N -0.614 5.614 5 C 0.147 3.853 6 C -0.169 4.169 7 C -0.059 4.059 8 C -0.146 4.146 9 C -0.061 4.061 10 C -0.192 4.192 11 C -0.075 4.075 12 C -0.252 4.252 13 C 0.119 3.881 14 O -0.212 6.212 15 C -0.416 4.416 16 H 0.096 0.904 17 C -0.015 4.015 18 N -0.910 5.910 19 Si 1.009 2.991 20 H -0.263 1.263 21 H -0.272 1.272 22 H -0.257 1.257 23 C -0.085 4.085 24 C 0.117 3.883 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.114 0.886 35 H 0.270 0.730 36 H 0.100 0.900 37 H 0.035 0.965 38 H 0.106 0.894 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.710 -6.119 -10.619 12.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.299 3.701 3 O -0.485 6.485 4 N -0.347 5.347 5 C 0.026 3.974 6 C -0.187 4.187 7 C -0.059 4.059 8 C -0.147 4.147 9 C -0.079 4.079 10 C -0.210 4.210 11 C -0.093 4.093 12 C -0.272 4.272 13 C 0.068 3.932 14 O -0.118 6.118 15 C -0.493 4.493 16 H 0.113 0.887 17 C -0.214 4.214 18 N -0.547 5.547 19 Si 0.829 3.171 20 H -0.187 1.187 21 H -0.197 1.197 22 H -0.181 1.181 23 C -0.123 4.123 24 C -0.005 4.005 25 H 0.120 0.880 26 H 0.104 0.896 27 H 0.137 0.863 28 H 0.122 0.878 29 H 0.135 0.865 30 H 0.122 0.878 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.132 0.868 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.053 0.947 38 H 0.124 0.876 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.706 -5.257 -10.718 12.240 hybrid contribution -0.260 0.139 1.602 1.629 sum 2.446 -5.118 -9.115 10.736 Atomic orbital electron populations 1.22012 0.88824 1.06178 1.05917 1.21482 0.92285 0.82380 0.73993 1.90640 1.71996 1.32658 1.53199 1.48376 1.08028 1.06704 1.71569 1.20814 0.95831 0.81218 0.99547 1.22634 0.94896 1.00901 1.00304 1.19287 0.95817 0.94616 0.96189 1.18518 1.02532 1.02815 0.90863 1.21181 0.93029 0.93467 1.00239 1.21101 1.03807 1.02738 0.93397 1.21204 0.94482 0.96859 0.96712 1.21261 1.03443 1.01943 1.00514 1.20048 0.88611 0.90705 0.93808 1.83945 1.45941 1.55812 1.26096 1.21705 1.25251 1.20118 0.82188 0.88713 1.26399 0.95590 0.94371 1.05041 1.70176 1.26694 1.19934 1.37911 0.84782 0.78668 0.79010 0.74632 1.18729 1.19695 1.18103 1.20622 1.00300 0.94079 0.97310 1.21691 0.79427 1.02111 0.97314 0.88001 0.89574 0.86259 0.87786 0.86464 0.87801 0.83324 0.83189 0.84197 0.86806 0.92114 0.88195 0.94653 0.87556 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 10.09 71.24 0.72 -3.45 16 2 C 0.51 17.21 7.82 87.66 0.69 17.90 16 3 O -0.60 -25.46 16.60 -3.03 -0.05 -25.52 16 4 N -0.61 -19.03 2.96 -823.32 -2.44 -21.47 16 5 C 0.15 3.90 6.36 85.43 0.54 4.44 16 6 C -0.17 -5.84 9.54 25.33 0.24 -5.59 16 7 C -0.06 -2.21 4.78 -17.84 -0.09 -2.29 16 8 C -0.15 -5.89 5.01 -20.01 -0.10 -5.99 16 9 C -0.06 -1.94 9.78 22.51 0.22 -1.72 16 10 C -0.19 -5.65 10.03 22.26 0.22 -5.42 16 11 C -0.07 -2.50 10.03 22.30 0.22 -2.28 16 12 C -0.25 -10.93 9.16 22.36 0.20 -10.73 16 13 C 0.12 5.81 6.64 22.86 0.15 5.96 16 14 O -0.21 -12.39 9.19 -21.34 -0.20 -12.58 16 15 C -0.42 -24.06 9.49 67.92 0.64 -23.42 16 16 H 0.10 5.10 5.20 -2.91 -0.02 5.08 16 17 C -0.02 -0.87 5.49 84.83 0.47 -0.41 16 18 N -0.91 -55.11 13.67 21.61 0.30 -54.82 16 19 Si 1.01 43.09 29.55 68.60 2.03 45.12 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 23 C -0.09 -2.94 5.95 29.65 0.18 -2.77 16 24 C 0.12 3.42 6.48 86.25 0.56 3.98 16 25 H 0.10 2.05 5.34 -2.39 -0.01 2.04 16 26 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.10 2.61 5.57 -2.39 -0.01 2.60 16 29 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.10 3.80 7.94 -2.91 -0.02 3.78 16 31 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 32 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 34 H 0.11 5.08 5.63 -2.91 -0.02 5.07 16 35 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 36 H 0.10 2.88 8.13 -2.39 -0.02 2.86 16 37 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.08 2.54 7.09 -2.39 -0.02 2.52 16 Total: -1.00 -77.52 328.06 5.58 -71.95 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 1.07 Total: 29.12 kcal Atomic # 6 Polarization: -36.67 SS G_CDS: 4.87 Total: -31.80 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -2.14 Total: -76.28 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -0.25 Total: -38.10 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -77.52 5.58 -71.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241968806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.355 kcal (2) G-P(sol) polarization free energy of solvation -77.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds