Wall clock time and date at job start Tue Mar 31 2020 05:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35387 * 117.00313 * 2 1 4 4 C 1.39171 * 120.45523 * 359.96446 * 3 2 1 5 5 C 1.38216 * 118.66165 * 180.02562 * 4 3 2 6 6 C 1.40455 * 119.54531 * 0.02562 * 5 4 3 7 7 C 1.47032 * 119.54469 * 179.97438 * 6 5 4 8 8 C 1.34885 * 119.41159 * 359.72313 * 7 6 5 9 9 C 1.40860 * 121.57491 * 179.51235 * 8 7 6 10 10 O 1.21423 * 119.75790 * 179.97438 * 9 8 7 11 11 C 1.50706 * 120.47515 * 0.25338 * 9 8 7 12 12 C 1.53192 * 109.06152 * 330.99510 * 11 9 8 13 13 H 1.08995 * 109.57297 * 297.04111 * 12 11 9 14 14 C 1.53002 * 109.57120 * 176.67731 * 12 11 9 15 15 C 1.50521 * 119.41025 * 179.97438 * 7 6 5 16 16 N 1.32599 * 120.90766 * 0.02562 * 6 5 4 17 17 C 1.33312 * 121.43317 * 359.97438 * 16 6 5 18 18 C 1.41036 * 119.81547 * 180.02562 * 17 16 6 19 19 H 1.08002 * 119.99992 * 179.97438 * 18 17 16 20 20 C 1.40087 * 119.99937 * 359.97438 * 18 17 16 21 21 N 1.30731 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99687 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47268 * 60.00010 * 22 20 18 24 24 H 1.48505 * 109.46922 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47205 * 299.99875 * 22 20 18 26 26 H 1.08996 * 109.47504 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47081 * 299.99351 * 1 2 3 28 28 H 1.09000 * 109.47388 * 59.99596 * 1 2 3 29 29 H 1.08003 * 120.66883 * 0.03779 * 4 3 2 30 30 H 1.07998 * 120.22236 * 180.27015 * 5 4 3 31 31 H 1.08008 * 119.21368 * 359.74763 * 8 7 6 32 32 H 1.09005 * 109.53809 * 211.12251 * 11 9 8 33 33 H 1.09007 * 109.54248 * 90.87469 * 11 9 8 34 34 H 1.08994 * 109.47501 * 300.60367 * 14 12 11 35 35 H 1.09002 * 109.46567 * 60.60446 * 14 12 11 36 36 H 1.08995 * 109.46967 * 180.59891 * 14 12 11 37 37 H 1.09007 * 109.46435 * 329.82217 * 15 7 6 38 38 H 1.09000 * 109.46384 * 89.79223 * 15 7 6 39 39 H 0.96996 * 119.99666 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0436 1.2063 0.0000 4 6 1.2950 2.3795 -0.0007 5 6 1.9608 3.5907 -0.0013 6 6 3.3652 3.6091 -0.0016 7 6 4.0735 4.8976 -0.0027 8 6 3.3629 6.0440 -0.0091 9 6 3.9942 7.3032 -0.0002 10 8 3.3221 8.3144 -0.0068 11 6 5.4978 7.4042 0.0111 12 6 6.0768 6.1719 0.7133 13 1 5.7473 6.1551 1.7521 14 6 7.6050 6.2215 0.6585 15 6 5.5786 4.9137 -0.0024 16 7 4.0611 2.4804 -0.0019 17 6 3.4578 1.2916 -0.0014 18 6 4.2316 0.1125 -0.0012 19 1 3.7459 -0.8522 -0.0004 20 6 5.6301 0.1925 -0.0021 21 7 6.2181 1.3601 -0.0025 22 14 6.6549 -1.3693 -0.0025 23 1 6.3405 -2.1674 -1.2148 24 1 8.0971 -1.0150 -0.0028 25 1 6.3420 -2.1671 1.2103 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 0.2156 2.3442 -0.0007 30 1 1.4049 4.5166 0.0026 31 1 2.2839 5.9954 -0.0174 32 1 5.7987 8.3043 0.5474 33 1 5.8681 7.4478 -1.0132 34 1 7.9309 6.2435 -0.3813 35 1 7.9579 7.1177 1.1689 36 1 8.0150 5.3388 1.1492 37 1 5.9513 4.0297 0.5151 38 1 5.9420 4.9129 -1.0301 39 1 7.1865 1.4155 -0.0027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242739752.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:24 Heat of formation + Delta-G solvation = -37.542155 kcal Electronic energy + Delta-G solvation = -22510.230371 eV Core-core repulsion = 19190.069417 eV Total energy + Delta-G solvation = -3320.160954 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.76727 -38.99935 -37.21449 -36.20475 -34.01052 -32.53095 -30.65127 -29.65357 -28.27348 -26.72597 -26.65877 -25.54566 -22.77231 -21.75322 -20.57411 -20.05344 -17.83485 -17.38157 -16.80531 -16.12801 -15.47388 -15.14150 -14.92676 -14.71853 -14.54552 -13.99918 -13.84925 -13.29504 -13.08769 -12.97686 -12.67798 -12.45890 -12.18111 -11.94199 -11.79397 -11.59600 -11.38648 -11.28419 -10.85005 -10.80172 -10.70610 -10.59012 -10.44569 -10.25177 -9.99478 -9.59812 -9.15836 -8.80139 -8.33109 -7.94978 -7.15723 -6.58846 -4.54877 1.05307 2.61306 2.75396 3.03246 3.06294 3.09379 3.58993 3.87400 4.22767 4.62324 4.66485 4.90437 5.08618 5.13035 5.38938 5.56489 5.57168 5.61824 5.69253 5.70796 5.78797 5.80171 5.85794 5.91893 5.99013 6.06514 6.11221 6.30791 6.39583 6.46420 6.53672 6.57025 6.67135 6.74829 7.05238 7.10815 7.27937 7.37172 7.64220 8.01438 8.04446 8.15394 8.54739 8.81307 9.77176 10.16083 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.013594 B = 0.006174 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.275163 B = 4533.887900 C = 6526.845592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.306 6.306 3 C -0.005 4.005 4 C -0.158 4.158 5 C -0.245 4.245 6 C 0.108 3.892 7 C 0.091 3.909 8 C -0.294 4.294 9 C 0.398 3.602 10 O -0.495 6.495 11 C -0.164 4.164 12 C -0.088 4.088 13 H 0.074 0.926 14 C -0.143 4.143 15 C -0.094 4.094 16 N -0.438 5.438 17 C 0.248 3.752 18 C -0.411 4.411 19 H 0.091 0.909 20 C 0.068 3.932 21 N -0.716 5.716 22 Si 0.911 3.089 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.265 1.265 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.819 2.466 0.364 2.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.219 6.219 3 C -0.055 4.055 4 C -0.182 4.182 5 C -0.270 4.270 6 C -0.030 4.030 7 C 0.089 3.911 8 C -0.315 4.315 9 C 0.282 3.718 10 O -0.376 6.376 11 C -0.202 4.202 12 C -0.106 4.106 13 H 0.092 0.908 14 C -0.200 4.200 15 C -0.130 4.130 16 N -0.154 5.154 17 C 0.119 3.881 18 C -0.442 4.442 19 H 0.109 0.891 20 C -0.157 4.157 21 N -0.338 5.338 22 Si 0.735 3.265 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.189 1.189 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.147 0.853 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.137 0.863 38 H 0.104 0.896 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.688 2.897 0.361 3.372 hybrid contribution -0.983 -0.606 -0.055 1.156 sum 0.705 2.291 0.306 2.417 Atomic orbital electron populations 1.22813 0.81270 1.02201 1.00179 1.85919 1.18703 1.27774 1.89459 1.20563 0.93810 0.83322 1.07765 1.20912 0.98097 0.92516 1.06665 1.21224 0.94220 0.96585 1.14921 1.19822 0.89708 0.92580 1.00932 1.21322 0.95407 0.91365 0.82994 1.22045 1.01484 0.92929 1.15036 1.20857 0.90990 0.88789 0.71149 1.90514 1.67894 1.39482 1.39716 1.22217 0.94982 0.99965 1.03008 1.21238 0.95942 0.93504 0.99950 0.90758 1.21773 0.94476 1.01757 1.01981 1.20857 0.90668 0.99269 1.02231 1.69003 1.34379 0.95198 1.16788 1.18156 0.84867 0.92155 0.92950 1.19513 0.90641 0.92911 1.41165 0.89062 1.26032 0.98606 0.97418 0.93625 1.70042 1.10616 1.24636 1.28490 0.86322 0.78317 0.81844 0.80018 1.18914 1.20192 1.18911 0.89605 0.93931 0.93940 0.87417 0.87622 0.85278 0.89607 0.88654 0.92528 0.92930 0.91920 0.86250 0.89612 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.82 101.05 0.99 1.48 16 2 O -0.31 -6.57 9.60 -17.85 -0.17 -6.74 16 3 C 0.00 -0.12 6.75 -37.93 -0.26 -0.37 16 4 C -0.16 -3.38 9.11 -39.24 -0.36 -3.74 16 5 C -0.25 -5.29 9.42 -38.75 -0.37 -5.66 16 6 C 0.11 2.46 6.73 -83.14 -0.56 1.90 16 7 C 0.09 1.76 5.85 -102.34 -0.60 1.16 16 8 C -0.29 -5.40 9.08 -39.78 -0.36 -5.76 16 9 C 0.40 6.94 6.82 -33.31 -0.23 6.71 16 10 O -0.49 -9.93 17.82 5.43 0.10 -9.83 16 11 C -0.16 -2.28 5.37 -27.78 -0.15 -2.43 16 12 C -0.09 -1.23 2.78 -90.48 -0.25 -1.48 16 13 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 14 C -0.14 -1.66 9.21 37.16 0.34 -1.32 16 15 C -0.09 -1.61 4.93 -27.93 -0.14 -1.75 16 16 N -0.44 -10.95 6.85 -7.72 -0.05 -11.00 16 17 C 0.25 6.38 6.57 -84.85 -0.56 5.82 16 18 C -0.41 -10.39 8.95 -37.83 -0.34 -10.73 16 19 H 0.09 2.25 7.31 -52.49 -0.38 1.87 16 20 C 0.07 1.61 5.50 -17.33 -0.10 1.51 16 21 N -0.72 -16.94 11.38 55.55 0.63 -16.31 16 22 Si 0.91 17.56 29.56 -169.99 -5.02 12.54 16 23 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 24 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 26 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 28 H 0.04 0.62 7.68 -51.93 -0.40 0.22 16 29 H 0.11 1.97 6.42 -52.48 -0.34 1.63 16 30 H 0.11 2.05 6.04 -52.49 -0.32 1.74 16 31 H 0.13 2.40 5.88 -52.48 -0.31 2.09 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.12 2.34 7.47 -51.92 -0.39 1.95 16 38 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.27 5.88 8.29 -40.82 -0.34 5.54 16 LS Contribution 325.33 15.07 4.90 4.90 Total: -1.00 -28.05 325.33 -7.58 -35.63 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.05 Total: 5.47 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -2.92 Total: -14.65 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 0.58 Total: -27.31 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.07 Total: -16.57 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.02 Total: 12.54 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.05 -7.58 -35.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242739752.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.909 kcal (2) G-P(sol) polarization free energy of solvation -28.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds