Wall clock time and date at job start Tue Mar 31 2020 05:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35387 * 117.00313 * 2 1 4 4 C 1.39171 * 120.45523 * 359.96446 * 3 2 1 5 5 C 1.38216 * 118.66165 * 180.02562 * 4 3 2 6 6 C 1.40455 * 119.54531 * 0.02562 * 5 4 3 7 7 C 1.47032 * 119.54469 * 179.97438 * 6 5 4 8 8 C 1.34885 * 119.41159 * 359.72313 * 7 6 5 9 9 C 1.40860 * 121.57491 * 179.51235 * 8 7 6 10 10 O 1.21423 * 119.75790 * 179.97438 * 9 8 7 11 11 C 1.50706 * 120.47515 * 0.25338 * 9 8 7 12 12 C 1.53192 * 109.06152 * 330.99510 * 11 9 8 13 13 H 1.08995 * 109.57297 * 297.04111 * 12 11 9 14 14 C 1.53002 * 109.57120 * 176.67731 * 12 11 9 15 15 C 1.50521 * 119.41025 * 179.97438 * 7 6 5 16 16 N 1.32599 * 120.90766 * 0.02562 * 6 5 4 17 17 C 1.33312 * 121.43317 * 359.97438 * 16 6 5 18 18 C 1.41036 * 119.81547 * 180.02562 * 17 16 6 19 19 H 1.08002 * 119.99992 * 179.97438 * 18 17 16 20 20 C 1.40087 * 119.99937 * 359.97438 * 18 17 16 21 21 N 1.30731 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99687 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47268 * 60.00010 * 22 20 18 24 24 H 1.48505 * 109.46922 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47205 * 299.99875 * 22 20 18 26 26 H 1.08996 * 109.47504 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47081 * 299.99351 * 1 2 3 28 28 H 1.09000 * 109.47388 * 59.99596 * 1 2 3 29 29 H 1.08003 * 120.66883 * 0.03779 * 4 3 2 30 30 H 1.07998 * 120.22236 * 180.27015 * 5 4 3 31 31 H 1.08008 * 119.21368 * 359.74763 * 8 7 6 32 32 H 1.09005 * 109.53809 * 211.12251 * 11 9 8 33 33 H 1.09007 * 109.54248 * 90.87469 * 11 9 8 34 34 H 1.08994 * 109.47501 * 300.60367 * 14 12 11 35 35 H 1.09002 * 109.46567 * 60.60446 * 14 12 11 36 36 H 1.08995 * 109.46967 * 180.59891 * 14 12 11 37 37 H 1.09007 * 109.46435 * 329.82217 * 15 7 6 38 38 H 1.09000 * 109.46384 * 89.79223 * 15 7 6 39 39 H 0.96996 * 119.99666 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0436 1.2063 0.0000 4 6 1.2950 2.3795 -0.0007 5 6 1.9608 3.5907 -0.0013 6 6 3.3652 3.6091 -0.0016 7 6 4.0735 4.8976 -0.0027 8 6 3.3629 6.0440 -0.0091 9 6 3.9942 7.3032 -0.0002 10 8 3.3221 8.3144 -0.0068 11 6 5.4978 7.4042 0.0111 12 6 6.0768 6.1719 0.7133 13 1 5.7473 6.1551 1.7521 14 6 7.6050 6.2215 0.6585 15 6 5.5786 4.9137 -0.0024 16 7 4.0611 2.4804 -0.0019 17 6 3.4578 1.2916 -0.0014 18 6 4.2316 0.1125 -0.0012 19 1 3.7459 -0.8522 -0.0004 20 6 5.6301 0.1925 -0.0021 21 7 6.2181 1.3601 -0.0025 22 14 6.6549 -1.3693 -0.0025 23 1 6.3405 -2.1674 -1.2148 24 1 8.0971 -1.0150 -0.0028 25 1 6.3420 -2.1671 1.2103 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 0.2156 2.3442 -0.0007 30 1 1.4049 4.5166 0.0026 31 1 2.2839 5.9954 -0.0174 32 1 5.7987 8.3043 0.5474 33 1 5.8681 7.4478 -1.0132 34 1 7.9309 6.2435 -0.3813 35 1 7.9579 7.1177 1.1689 36 1 8.0150 5.3388 1.1492 37 1 5.9513 4.0297 0.5151 38 1 5.9420 4.9129 -1.0301 39 1 7.1865 1.4155 -0.0027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242739752.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:24 Heat of formation + Delta-G solvation = -52.252975 kcal Electronic energy + Delta-G solvation = -22510.868280 eV Core-core repulsion = 19190.069417 eV Total energy + Delta-G solvation = -3320.798863 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.24622 -40.59877 -38.78966 -37.63520 -35.69289 -33.98931 -32.37968 -31.22194 -29.64037 -28.15674 -27.94617 -27.12897 -24.30646 -23.43424 -21.89118 -21.55675 -19.47945 -18.87017 -18.41572 -17.68271 -16.99701 -16.73760 -16.41245 -16.07459 -15.98220 -15.49383 -15.22104 -14.85791 -14.54301 -14.49656 -14.20356 -13.87522 -13.50265 -13.24954 -12.98172 -12.96497 -12.85981 -12.80850 -12.52177 -12.20908 -12.11684 -12.08494 -11.68472 -11.63071 -11.45884 -11.28752 -10.57277 -10.34631 -10.09157 -9.70075 -8.87392 -8.31530 -6.37866 -0.48200 0.89975 1.08797 1.45598 1.55428 1.55566 2.09430 2.27002 2.74738 2.87639 3.34941 3.59162 3.72044 3.81402 3.95895 4.06996 4.18310 4.26011 4.43301 4.44189 4.49545 4.55917 4.67712 4.71201 4.73384 4.75223 4.87372 4.92783 4.95149 5.15705 5.17868 5.26447 5.31207 5.35563 5.47283 5.51774 5.59120 5.78366 5.95687 6.29713 6.33073 6.64104 6.78732 7.06839 7.98984 8.45426 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.013594 B = 0.006174 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.275163 B = 4533.887900 C = 6526.845592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.329 6.329 3 C -0.022 4.022 4 C -0.157 4.157 5 C -0.251 4.251 6 C 0.086 3.914 7 C 0.079 3.921 8 C -0.285 4.285 9 C 0.399 3.601 10 O -0.521 6.521 11 C -0.154 4.154 12 C -0.079 4.079 13 H 0.069 0.931 14 C -0.138 4.138 15 C -0.087 4.087 16 N -0.457 5.457 17 C 0.211 3.789 18 C -0.446 4.446 19 H 0.084 0.916 20 C 0.030 3.970 21 N -0.738 5.738 22 Si 0.981 3.019 23 H -0.265 1.265 24 H -0.264 1.264 25 H -0.265 1.265 26 H 0.116 0.884 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.140 0.860 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.403 3.249 0.316 3.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.242 6.242 3 C -0.071 4.071 4 C -0.180 4.180 5 C -0.274 4.274 6 C -0.052 4.052 7 C 0.077 3.923 8 C -0.305 4.305 9 C 0.285 3.715 10 O -0.404 6.404 11 C -0.191 4.191 12 C -0.097 4.097 13 H 0.087 0.913 14 C -0.195 4.195 15 C -0.123 4.123 16 N -0.172 5.172 17 C 0.082 3.918 18 C -0.478 4.478 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.360 5.360 22 Si 0.802 3.198 23 H -0.189 1.189 24 H -0.188 1.188 25 H -0.189 1.189 26 H 0.134 0.866 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.157 0.843 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.254 3.691 0.315 4.337 hybrid contribution -1.343 -0.797 -0.042 1.562 sum 0.912 2.894 0.273 3.046 Atomic orbital electron populations 1.23166 0.78255 1.04664 1.01121 1.85866 1.21824 1.27092 1.89441 1.20606 0.93626 0.84678 1.08236 1.21250 0.99669 0.91710 1.05417 1.21569 0.94242 0.97639 1.13985 1.20385 0.90716 0.93322 1.00794 1.21393 0.96612 0.90232 0.84019 1.22131 1.01315 0.93338 1.13761 1.21223 0.92790 0.87608 0.69844 1.90512 1.68934 1.39987 1.40925 1.22198 0.91759 1.00593 1.04556 1.21175 0.97664 0.91802 0.99096 0.91295 1.21737 0.92238 1.02572 1.02920 1.20793 0.89150 0.99981 1.02423 1.68966 1.35281 0.95599 1.17395 1.18598 0.86535 0.92774 0.93893 1.19692 0.91981 0.92701 1.43415 0.89788 1.26772 0.98951 1.00600 0.93005 1.70098 1.11281 1.26233 1.28393 0.85278 0.77111 0.77776 0.79658 1.18934 1.18763 1.18933 0.86557 0.92870 0.92877 0.84261 0.85606 0.85885 0.87357 0.86570 0.91580 0.90683 0.92583 0.88928 0.89337 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.82 113.37 1.11 1.79 16 2 O -0.33 -14.27 9.60 -86.79 -0.83 -15.10 16 3 C -0.02 -1.05 6.75 23.34 0.16 -0.90 16 4 C -0.16 -6.66 9.11 22.49 0.20 -6.46 16 5 C -0.25 -10.84 9.42 22.81 0.21 -10.62 16 6 C 0.09 4.00 6.73 41.88 0.28 4.28 16 7 C 0.08 3.08 5.85 -18.38 -0.11 2.97 16 8 C -0.28 -10.27 9.08 22.14 0.20 -10.06 16 9 C 0.40 13.25 6.82 26.33 0.18 13.43 16 10 O -0.52 -20.08 17.82 -3.47 -0.06 -20.15 16 11 C -0.15 -3.82 5.37 29.91 0.16 -3.66 16 12 C -0.08 -2.06 2.78 -10.70 -0.03 -2.09 16 13 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 14 C -0.14 -2.85 9.21 71.98 0.66 -2.18 16 15 C -0.09 -2.96 4.93 29.82 0.15 -2.82 16 16 N -0.46 -23.66 6.85 -178.34 -1.22 -24.88 16 17 C 0.21 11.31 6.57 40.45 0.27 11.58 16 18 C -0.45 -23.53 8.95 23.41 0.21 -23.32 16 19 H 0.08 4.35 7.31 -2.91 -0.02 4.33 16 20 C 0.03 1.43 5.50 85.31 0.47 1.90 16 21 N -0.74 -35.83 11.38 21.85 0.25 -35.58 16 22 Si 0.98 36.50 29.56 68.60 2.03 38.53 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 24 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 25 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 26 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.05 1.45 7.69 -2.39 -0.02 1.44 16 28 H 0.05 1.45 7.68 -2.39 -0.02 1.43 16 29 H 0.14 4.86 6.42 -2.91 -0.02 4.84 16 30 H 0.13 4.80 6.04 -2.91 -0.02 4.78 16 31 H 0.12 4.52 5.88 -2.91 -0.02 4.50 16 32 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.12 2.50 8.14 -2.38 -0.02 2.48 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 3.72 7.47 -2.38 -0.02 3.70 16 38 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.28 12.28 8.29 -92.71 -0.77 11.51 16 Total: -1.00 -62.78 325.33 5.36 -57.43 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 1.07 Total: 25.91 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 4.13 Total: -26.16 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: -0.97 Total: -60.46 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.90 Total: -35.25 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Total: -62.78 5.36 -57.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242739752.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.173 kcal (2) G-P(sol) polarization free energy of solvation -62.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds