Wall clock time and date at job start Tue Mar 31 2020 06:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47140 * 2 1 4 4 C 1.34225 * 117.00119 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99908 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00557 * 180.02562 * 4 3 2 7 7 N 1.46894 * 109.47419 * 174.46983 * 6 4 3 8 8 C 1.46901 * 111.00310 * 163.76782 * 7 6 4 9 9 C 1.50690 * 109.47063 * 200.90849 * 8 7 6 10 10 H 1.08000 * 120.00578 * 4.61520 * 9 8 7 11 11 C 1.37883 * 119.99708 * 184.61324 * 9 8 7 12 12 N 1.31512 * 119.99895 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00047 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47181 * 59.99660 * 13 11 9 15 15 H 1.48501 * 109.47275 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46901 * 299.99966 * 13 11 9 17 17 C 1.46912 * 110.99531 * 287.71961 * 7 6 4 18 18 C 1.52584 * 109.22463 * 167.40138 * 17 7 6 19 19 C 1.53090 * 109.95376 * 190.99369 * 18 17 7 20 20 S 1.81741 * 108.84289 * 296.97519 * 19 18 17 21 21 C 1.81743 * 102.22258 * 53.26840 * 20 19 18 22 22 C 1.52583 * 109.22385 * 288.63295 * 17 7 6 23 23 H 1.09001 * 109.47283 * 59.99526 * 1 2 3 24 24 H 1.08997 * 109.47491 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47031 * 299.99451 * 1 2 3 26 26 H 1.09005 * 109.46792 * 240.00086 * 2 1 3 27 27 H 1.09001 * 109.47283 * 120.00474 * 2 1 3 28 28 H 1.08995 * 109.46819 * 54.46482 * 6 4 3 29 29 H 1.09000 * 109.46486 * 294.46850 * 6 4 3 30 30 H 1.08995 * 109.46511 * 320.91146 * 8 7 6 31 31 H 1.09001 * 109.46724 * 80.90423 * 8 7 6 32 32 H 0.97003 * 120.00116 * 179.97438 * 12 11 9 33 33 H 1.08997 * 109.18555 * 48.02089 * 17 7 6 34 34 H 1.09000 * 109.38931 * 311.14961 * 18 17 7 35 35 H 1.09004 * 109.39002 * 70.84327 * 18 17 7 36 36 H 1.09003 * 109.57103 * 177.16864 * 19 18 17 37 37 H 1.09003 * 109.57632 * 56.78891 * 19 18 17 38 38 H 1.08994 * 109.57955 * 186.93029 * 21 20 19 39 39 H 1.08994 * 109.57547 * 66.53873 * 21 20 19 40 40 H 1.08997 * 109.39734 * 289.15582 * 22 17 7 41 41 H 1.09001 * 109.38749 * 48.85949 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 7 5.3817 2.8629 0.1351 8 6 6.0105 4.1364 -0.2403 9 6 7.4571 3.8987 -0.5888 10 1 7.8496 2.8928 -0.6091 11 6 8.2798 4.9657 -0.8819 12 7 7.8021 6.1907 -0.8568 13 14 10.0730 4.6712 -1.3147 14 1 10.1560 3.8117 -2.5228 15 1 10.7370 5.9716 -1.5851 16 1 10.7517 3.9961 -0.1794 17 6 5.7659 2.4673 1.4968 18 6 7.2465 2.0987 1.5140 19 6 7.6025 1.4281 2.8434 20 16 7.3335 2.6173 4.1912 21 6 5.6186 3.1452 3.9021 22 6 5.4860 3.6226 2.4534 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.5074 3.5011 0.8374 29 1 3.6666 3.4360 -0.9342 30 1 5.4932 4.5565 -1.1028 31 1 5.9477 4.8329 0.5958 32 1 8.3809 6.9414 -1.0626 33 1 5.1768 1.6011 1.7978 34 1 7.4580 1.4122 0.6942 35 1 7.8455 3.0011 1.3920 36 1 8.6486 1.1224 2.8295 37 1 6.9670 0.5554 2.9940 38 1 5.3685 3.9613 4.5798 39 1 4.9444 2.3061 4.0733 40 1 6.2000 4.4255 2.2702 41 1 4.4750 3.9941 2.2860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255095871.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:08 Heat of formation + Delta-G solvation = -81.753447 kcal Electronic energy + Delta-G solvation = -21960.336321 eV Core-core repulsion = 18773.702173 eV Total energy + Delta-G solvation = -3186.634148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.27442 -38.37047 -36.22417 -33.62164 -32.60292 -31.75403 -31.08653 -28.50067 -26.72234 -24.78628 -23.08969 -22.87342 -21.73341 -20.70920 -19.00668 -17.43706 -16.71714 -16.46934 -16.33415 -15.71485 -15.27408 -14.64701 -14.37379 -14.11046 -13.70636 -13.42901 -13.30834 -13.03520 -12.89172 -12.49959 -12.36011 -12.30220 -11.97590 -11.80553 -11.62580 -11.34962 -11.17421 -10.86752 -10.75737 -10.64057 -10.49119 -10.35561 -10.14785 -9.95695 -9.50142 -9.35400 -9.14097 -8.42677 -7.41155 -7.30812 -6.05302 -4.03826 2.15225 2.55603 2.80082 2.89454 3.34326 3.38483 3.41669 4.38984 4.65502 4.83349 4.85871 5.01343 5.10595 5.18327 5.25914 5.29668 5.37841 5.50077 5.55114 5.58550 5.62219 5.65225 5.71486 5.78985 5.83663 5.96512 6.03973 6.05477 6.40851 6.58227 6.62577 6.79884 6.99713 7.24636 7.30695 7.73988 7.91807 8.05046 8.14394 8.42243 9.00733 9.57778 11.04945 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.013747 B = 0.005920 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.260776 B = 4728.260787 C = 6001.128731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.368 6.368 4 C 0.458 3.542 5 O -0.488 6.488 6 C 0.060 3.940 7 N -0.514 5.514 8 C 0.186 3.814 9 C -0.503 4.503 10 H 0.071 0.929 11 C 0.058 3.942 12 N -0.898 5.898 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.275 1.275 17 C 0.098 3.902 18 C -0.111 4.111 19 C -0.074 4.074 20 S -0.285 6.285 21 C -0.068 4.068 22 C -0.160 4.160 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.026 0.974 31 H 0.015 0.985 32 H 0.262 0.738 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.938 -8.275 5.654 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.286 6.286 4 C 0.299 3.701 5 O -0.373 6.373 6 C -0.070 4.070 7 N -0.238 5.238 8 C 0.062 3.938 9 C -0.541 4.541 10 H 0.089 0.911 11 C -0.144 4.144 12 N -0.537 5.537 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.200 1.200 17 C -0.011 4.011 18 C -0.149 4.149 19 C -0.223 4.223 20 S -0.059 6.059 21 C -0.217 4.217 22 C -0.200 4.200 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.044 0.956 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.800 -8.452 6.083 14.299 hybrid contribution -0.221 -0.008 -0.669 0.704 sum -10.021 -8.461 5.414 14.189 Atomic orbital electron populations 1.21791 0.92970 1.02651 1.03411 1.22914 0.95029 0.80935 1.02349 1.86510 1.25497 1.31790 1.84763 1.24115 0.79854 0.93519 0.72595 1.90636 1.60067 1.42834 1.43723 1.21666 0.92042 0.89100 1.04192 1.62076 1.02336 1.36408 1.23023 1.19970 0.94833 0.83125 0.95825 1.21181 0.93619 0.93574 1.45742 0.91128 1.24936 0.98677 0.95045 0.95706 1.69928 1.36107 0.98275 1.49412 0.86626 0.84884 0.77282 0.79114 1.20259 1.21442 1.20033 1.21423 0.97123 0.95242 0.87301 1.22037 0.96103 1.03186 0.93612 1.23556 1.04746 0.97910 0.96062 1.86577 1.19362 1.57525 1.42482 1.23296 0.94644 1.03246 1.00549 1.22509 1.02755 1.01775 0.92945 0.91520 0.90541 0.91622 0.91431 0.91628 0.91487 0.86940 0.95638 0.96755 0.92864 0.92101 0.90184 0.87058 0.88247 0.90887 0.88484 0.90843 0.88457 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.29 37.16 0.38 -0.85 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.37 -5.26 10.22 -39.24 -0.40 -5.67 16 4 C 0.46 7.66 7.45 36.01 0.27 7.93 16 5 O -0.49 -9.48 14.99 -18.75 -0.28 -9.76 16 6 C 0.06 1.00 5.47 -4.98 -0.03 0.98 16 7 N -0.51 -10.40 4.03 -230.04 -0.93 -11.33 16 8 C 0.19 4.40 4.52 -4.98 -0.02 4.37 16 9 C -0.50 -13.05 6.74 -34.44 -0.23 -13.29 16 10 H 0.07 1.84 5.95 -52.49 -0.31 1.53 16 11 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 12 N -0.90 -25.31 13.29 55.43 0.74 -24.58 16 13 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 C 0.10 1.82 1.61 -68.13 -0.11 1.71 16 18 C -0.11 -2.12 3.61 -26.90 -0.10 -2.22 16 19 C -0.07 -1.21 6.45 37.20 0.24 -0.97 16 20 S -0.28 -4.71 22.33 -107.50 -2.40 -7.11 16 21 C -0.07 -1.02 6.46 37.21 0.24 -0.78 16 22 C -0.16 -2.73 4.08 -26.89 -0.11 -2.84 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 27 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.07 1.02 6.17 -51.93 -0.32 0.70 16 29 H 0.11 1.81 7.66 -51.93 -0.40 1.41 16 30 H 0.03 0.64 7.62 -51.93 -0.40 0.25 16 31 H 0.01 0.36 5.53 -51.93 -0.29 0.07 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.06 1.13 6.48 -51.93 -0.34 0.79 16 34 H 0.08 1.63 7.48 -51.93 -0.39 1.24 16 35 H 0.11 2.47 5.90 -51.93 -0.31 2.16 16 36 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.10 1.96 6.52 -51.93 -0.34 1.62 16 41 H 0.06 1.00 6.23 -51.93 -0.32 0.68 16 LS Contribution 331.14 15.07 4.99 4.99 Total: -1.00 -29.11 331.14 -8.98 -38.10 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.35 Total: 2.84 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 0.67 Total: -3.55 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.19 Total: -35.91 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.68 Total: -15.42 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -4.71 SS G_CDS: -2.40 Total: -7.11 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.11 -8.98 -38.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255095871.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.657 kcal (2) G-P(sol) polarization free energy of solvation -29.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds