Wall clock time and date at job start Tue Mar 31 2020 06:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47140 * 2 1 4 4 C 1.34225 * 117.00119 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99908 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00557 * 180.02562 * 4 3 2 7 7 N 1.46894 * 109.47419 * 174.46983 * 6 4 3 8 8 C 1.46901 * 111.00310 * 163.76782 * 7 6 4 9 9 C 1.50690 * 109.47063 * 200.90849 * 8 7 6 10 10 H 1.08000 * 120.00578 * 4.61520 * 9 8 7 11 11 C 1.37883 * 119.99708 * 184.61324 * 9 8 7 12 12 N 1.31512 * 119.99895 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00047 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47181 * 59.99660 * 13 11 9 15 15 H 1.48501 * 109.47275 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46901 * 299.99966 * 13 11 9 17 17 C 1.46912 * 110.99531 * 287.71961 * 7 6 4 18 18 C 1.52584 * 109.22463 * 167.40138 * 17 7 6 19 19 C 1.53090 * 109.95376 * 190.99369 * 18 17 7 20 20 S 1.81741 * 108.84289 * 296.97519 * 19 18 17 21 21 C 1.81743 * 102.22258 * 53.26840 * 20 19 18 22 22 C 1.52583 * 109.22385 * 288.63295 * 17 7 6 23 23 H 1.09001 * 109.47283 * 59.99526 * 1 2 3 24 24 H 1.08997 * 109.47491 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47031 * 299.99451 * 1 2 3 26 26 H 1.09005 * 109.46792 * 240.00086 * 2 1 3 27 27 H 1.09001 * 109.47283 * 120.00474 * 2 1 3 28 28 H 1.08995 * 109.46819 * 54.46482 * 6 4 3 29 29 H 1.09000 * 109.46486 * 294.46850 * 6 4 3 30 30 H 1.08995 * 109.46511 * 320.91146 * 8 7 6 31 31 H 1.09001 * 109.46724 * 80.90423 * 8 7 6 32 32 H 0.97003 * 120.00116 * 179.97438 * 12 11 9 33 33 H 1.08997 * 109.18555 * 48.02089 * 17 7 6 34 34 H 1.09000 * 109.38931 * 311.14961 * 18 17 7 35 35 H 1.09004 * 109.39002 * 70.84327 * 18 17 7 36 36 H 1.09003 * 109.57103 * 177.16864 * 19 18 17 37 37 H 1.09003 * 109.57632 * 56.78891 * 19 18 17 38 38 H 1.08994 * 109.57955 * 186.93029 * 21 20 19 39 39 H 1.08994 * 109.57547 * 66.53873 * 21 20 19 40 40 H 1.08997 * 109.39734 * 289.15582 * 22 17 7 41 41 H 1.09001 * 109.38749 * 48.85949 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 7 5.3817 2.8629 0.1351 8 6 6.0105 4.1364 -0.2403 9 6 7.4571 3.8987 -0.5888 10 1 7.8496 2.8928 -0.6091 11 6 8.2798 4.9657 -0.8819 12 7 7.8021 6.1907 -0.8568 13 14 10.0730 4.6712 -1.3147 14 1 10.1560 3.8117 -2.5228 15 1 10.7370 5.9716 -1.5851 16 1 10.7517 3.9961 -0.1794 17 6 5.7659 2.4673 1.4968 18 6 7.2465 2.0987 1.5140 19 6 7.6025 1.4281 2.8434 20 16 7.3335 2.6173 4.1912 21 6 5.6186 3.1452 3.9021 22 6 5.4860 3.6226 2.4534 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.5074 3.5011 0.8374 29 1 3.6666 3.4360 -0.9342 30 1 5.4932 4.5565 -1.1028 31 1 5.9477 4.8329 0.5958 32 1 8.3809 6.9414 -1.0626 33 1 5.1768 1.6011 1.7978 34 1 7.4580 1.4122 0.6942 35 1 7.8455 3.0011 1.3920 36 1 8.6486 1.1224 2.8295 37 1 6.9670 0.5554 2.9940 38 1 5.3685 3.9613 4.5798 39 1 4.9444 2.3061 4.0733 40 1 6.2000 4.4255 2.2702 41 1 4.4750 3.9941 2.2860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255095871.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:08 Heat of formation + Delta-G solvation = -98.282440 kcal Electronic energy + Delta-G solvation = -21961.053072 eV Core-core repulsion = 18773.702173 eV Total energy + Delta-G solvation = -3187.350899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58961 -39.84372 -37.49596 -35.23273 -34.47072 -32.64481 -32.46674 -30.14178 -28.29913 -26.35135 -24.37480 -24.10149 -23.29675 -22.00057 -20.55687 -18.79449 -18.35036 -17.92146 -17.59360 -17.18980 -16.65118 -16.49241 -15.70106 -15.48979 -15.02375 -14.81010 -14.72266 -14.33277 -14.09466 -13.83113 -13.76751 -13.54221 -13.36696 -13.04909 -12.96713 -12.78048 -12.68881 -12.49571 -12.45577 -12.19074 -12.12558 -11.68210 -11.51782 -11.47181 -11.15284 -11.04992 -10.61889 -10.48378 -9.02536 -8.62814 -8.11876 -6.14768 0.87608 1.23231 1.44396 1.45157 1.51587 1.60842 1.62372 2.45298 3.14275 3.21472 3.72637 3.82867 3.92299 4.01793 4.03845 4.12309 4.13584 4.20783 4.26130 4.35477 4.37835 4.48220 4.56869 4.63589 4.75385 4.84290 4.93872 4.94545 5.05899 5.15764 5.17779 5.24472 5.45474 5.47312 5.62494 5.75768 6.11507 6.28850 6.52539 6.86251 6.95577 7.49812 8.97690 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.013747 B = 0.005920 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.260776 B = 4728.260787 C = 6001.128731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.364 6.364 4 C 0.467 3.533 5 O -0.519 6.519 6 C 0.056 3.944 7 N -0.530 5.530 8 C 0.202 3.798 9 C -0.503 4.503 10 H 0.065 0.935 11 C 0.011 3.989 12 N -0.930 5.930 13 Si 0.947 3.053 14 H -0.274 1.274 15 H -0.287 1.287 16 H -0.270 1.270 17 C 0.102 3.898 18 C -0.105 4.105 19 C -0.065 4.065 20 S -0.306 6.306 21 C -0.059 4.059 22 C -0.151 4.151 23 H 0.068 0.932 24 H 0.100 0.900 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.006 0.994 31 H 0.002 0.998 32 H 0.261 0.739 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.225 -9.434 6.591 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 O -0.281 6.281 4 C 0.310 3.690 5 O -0.406 6.406 6 C -0.073 4.073 7 N -0.254 5.254 8 C 0.078 3.922 9 C -0.542 4.542 10 H 0.083 0.917 11 C -0.187 4.187 12 N -0.571 5.571 13 Si 0.774 3.226 14 H -0.199 1.199 15 H -0.213 1.213 16 H -0.195 1.195 17 C -0.006 4.006 18 C -0.144 4.144 19 C -0.214 4.214 20 S -0.080 6.080 21 C -0.207 4.207 22 C -0.191 4.191 23 H 0.087 0.913 24 H 0.119 0.881 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.136 0.864 30 H 0.024 0.976 31 H 0.020 0.980 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.134 0.866 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.113 -9.626 7.026 16.295 hybrid contribution 0.071 0.294 -0.964 1.010 sum -11.042 -9.332 6.062 15.677 Atomic orbital electron populations 1.21814 0.90152 1.04368 1.03747 1.23270 0.97181 0.79297 1.02322 1.86498 1.23777 1.33756 1.84060 1.23879 0.80523 0.92773 0.71811 1.90628 1.60973 1.43637 1.45391 1.21703 0.90104 0.90029 1.05442 1.61892 1.04546 1.34414 1.24536 1.19602 0.93823 0.84353 0.94472 1.21443 0.94959 0.93172 1.44592 0.91710 1.25606 1.02175 0.94918 0.96001 1.70028 1.37254 0.98890 1.50916 0.85763 0.80874 0.77101 0.78910 1.19949 1.21296 1.19535 1.21406 0.96586 0.95865 0.86781 1.21841 0.96230 1.01422 0.94867 1.23471 1.05789 0.97981 0.94156 1.86674 1.21261 1.57917 1.42170 1.23333 0.93646 1.04621 0.99135 1.22345 1.02513 1.00026 0.94192 0.91324 0.88118 0.91123 0.91783 0.91461 0.89267 0.86389 0.97606 0.97994 0.93028 0.91386 0.91929 0.90429 0.87313 0.89232 0.86567 0.88734 0.91917 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 10.29 71.98 0.74 -1.20 16 2 C 0.05 1.11 6.19 71.98 0.45 1.55 16 3 O -0.36 -9.73 10.22 -51.37 -0.53 -10.26 16 4 C 0.47 15.05 7.45 71.24 0.53 15.58 16 5 O -0.52 -19.70 14.99 21.95 0.33 -19.37 16 6 C 0.06 1.84 5.47 85.56 0.47 2.31 16 7 N -0.53 -21.46 4.03 -881.71 -3.55 -25.01 16 8 C 0.20 9.77 4.52 85.55 0.39 10.16 16 9 C -0.50 -26.72 6.74 25.60 0.17 -26.55 16 10 H 0.06 3.46 5.95 -2.91 -0.02 3.44 16 11 C 0.01 0.61 5.46 84.66 0.46 1.07 16 12 N -0.93 -53.51 13.29 21.45 0.28 -53.22 16 13 Si 0.95 43.83 29.54 68.60 2.03 45.85 16 14 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 15 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 17 C 0.10 3.72 1.61 44.64 0.07 3.80 16 18 C -0.10 -4.02 3.61 30.49 0.11 -3.91 16 19 C -0.07 -2.06 6.45 72.01 0.46 -1.59 16 20 S -0.31 -9.68 22.33 -56.49 -1.26 -10.94 16 21 C -0.06 -1.62 6.46 72.02 0.46 -1.15 16 22 C -0.15 -4.99 4.08 30.49 0.12 -4.86 16 23 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 1.39 8.13 -2.38 -0.02 1.37 16 27 H 0.07 1.40 8.13 -2.39 -0.02 1.38 16 28 H 0.09 2.54 6.17 -2.39 -0.01 2.52 16 29 H 0.12 3.73 7.66 -2.39 -0.02 3.71 16 30 H 0.01 0.30 7.62 -2.39 -0.02 0.29 16 31 H 0.00 0.12 5.53 -2.39 -0.01 0.11 16 32 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.07 2.41 6.48 -2.39 -0.02 2.40 16 34 H 0.06 2.59 7.48 -2.39 -0.02 2.57 16 35 H 0.08 3.52 5.90 -2.39 -0.01 3.51 16 36 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.06 2.55 6.52 -2.39 -0.02 2.54 16 41 H 0.08 2.35 6.23 -2.39 -0.01 2.33 16 Total: -1.00 -63.01 331.14 2.76 -60.25 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 1.02 Total: 17.50 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 4.44 Total: -4.81 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -3.26 Total: -78.23 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.20 Total: -29.63 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -9.68 SS G_CDS: -1.26 Total: -10.94 kcal Total: -63.01 2.76 -60.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255095871.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.032 kcal (2) G-P(sol) polarization free energy of solvation -63.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds