Wall clock time and date at job start Tue Mar 31 2020 06:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47289 * 2 1 4 4 C 1.52996 * 109.46905 * 239.99795 * 2 1 3 5 5 C 1.53005 * 109.47280 * 174.37638 * 4 2 1 6 6 F 1.39899 * 109.46531 * 60.00023 * 5 4 2 7 7 F 1.39895 * 109.47191 * 180.02562 * 5 4 2 8 8 F 1.39897 * 109.46983 * 300.00372 * 5 4 2 9 9 N 1.46497 * 109.46632 * 120.00202 * 2 1 3 10 10 C 1.36940 * 120.00204 * 67.72090 * 9 2 1 11 11 H 1.07992 * 120.00212 * 34.87112 * 10 9 2 12 12 C 1.38809 * 119.99708 * 214.87586 * 10 9 2 13 13 N 1.31621 * 120.00275 * 22.66406 * 12 10 9 14 14 Si 1.86798 * 120.00245 * 202.65851 * 12 10 9 15 15 H 1.48495 * 109.46987 * 59.99999 * 14 12 10 16 16 H 1.48497 * 109.47371 * 180.02562 * 14 12 10 17 17 H 1.48509 * 109.47164 * 300.00341 * 14 12 10 18 18 C 1.46508 * 119.99985 * 247.71025 * 9 2 1 19 19 C 1.50696 * 109.47364 * 270.00565 * 18 9 2 20 20 C 1.38238 * 120.00088 * 269.72898 * 19 18 9 21 21 C 1.38234 * 119.99879 * 179.76910 * 20 19 18 22 22 C 1.38234 * 120.00138 * 0.49769 * 21 20 19 23 23 C 1.38236 * 120.00019 * 359.75382 * 22 21 20 24 24 C 1.38234 * 120.00062 * 89.99575 * 19 18 9 25 25 H 1.09001 * 109.46995 * 293.69193 * 1 2 3 26 26 H 1.09001 * 109.46699 * 53.68646 * 1 2 3 27 27 H 1.08992 * 109.47692 * 173.68657 * 1 2 3 28 28 H 1.09001 * 109.47412 * 294.38008 * 4 2 1 29 29 H 1.09002 * 109.47326 * 54.38032 * 4 2 1 30 30 H 0.96999 * 120.00437 * 180.02562 * 13 12 10 31 31 H 1.08994 * 109.46588 * 150.00218 * 18 9 2 32 32 H 1.08999 * 109.46654 * 30.00542 * 18 9 2 33 33 H 1.08003 * 119.99573 * 359.97438 * 20 19 18 34 34 H 1.08004 * 119.99423 * 180.22648 * 21 20 19 35 35 H 1.07995 * 119.99670 * 179.72393 * 22 21 20 36 36 H 1.07996 * 120.00111 * 179.97438 * 23 22 21 37 37 H 1.08000 * 120.00097 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5635 -0.6001 -1.3220 6 9 4.1322 -1.1807 -0.1833 7 9 4.0296 -1.2591 -2.4645 8 9 3.9213 0.7509 -1.3848 9 7 2.0182 -0.6907 1.1962 10 6 1.8225 -2.0387 1.3363 11 1 1.8533 -2.6819 0.4693 12 6 1.5845 -2.5785 2.5928 13 7 1.1094 -1.8183 3.5565 14 14 1.9384 -4.3840 2.9160 15 1 3.3780 -4.6571 2.6751 16 1 1.6012 -4.7100 4.3250 17 1 1.1166 -5.2204 2.0047 18 6 2.7161 0.0609 2.2424 19 6 4.1948 0.0711 1.9523 20 6 5.0055 -0.9274 2.4589 21 6 6.3612 -0.9207 2.1888 22 6 6.9078 0.0902 1.4206 23 6 6.0980 1.0916 0.9182 24 6 4.7415 1.0820 1.1841 25 1 -0.3633 0.4129 0.9411 26 1 -0.3633 0.6086 -0.8281 27 1 -0.3634 -1.0213 -0.1130 28 1 1.7611 -1.7739 -1.2003 29 1 1.5968 -0.2689 -2.1364 30 1 0.9434 -2.1954 4.4346 31 1 2.5386 -0.4113 3.2086 32 1 2.3430 1.0848 2.2644 33 1 4.5791 -1.7146 3.0630 34 1 6.9939 -1.7029 2.5816 35 1 7.9677 0.0979 1.2133 36 1 6.5251 1.8816 0.3184 37 1 4.1089 1.8647 0.7922 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255656295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:51 Heat of formation + Delta-G solvation = -102.765243 kcal Electronic energy + Delta-G solvation = -25145.784617 eV Core-core repulsion = 21280.938638 eV Total energy + Delta-G solvation = -3864.845979 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.27043 -46.90369 -46.53704 -38.47253 -36.59222 -32.97193 -31.44844 -30.09925 -29.30172 -28.09893 -25.56862 -23.57774 -22.64125 -21.75784 -20.42585 -19.79748 -17.73341 -17.56988 -16.94034 -16.22946 -15.68222 -15.20478 -14.42457 -14.30744 -14.14872 -13.83163 -13.58228 -13.39784 -13.25446 -13.11245 -12.78804 -12.68009 -12.61224 -12.20398 -11.92410 -11.84073 -11.65973 -11.39379 -11.23504 -10.82697 -10.80264 -10.53852 -10.47372 -10.27802 -9.99566 -9.90998 -9.73730 -8.54897 -8.13234 -7.81188 -6.71280 -5.86600 -3.39904 2.16198 2.20520 3.33385 3.40300 3.44437 3.61092 4.38678 4.58807 4.65169 4.81966 4.93473 5.26746 5.37599 5.57297 5.60985 5.70685 5.76324 5.88545 5.97221 6.05250 6.25271 6.29171 6.32152 6.36289 6.48254 6.57529 6.78294 6.85044 6.87903 7.10336 7.20560 7.27128 7.46994 7.70803 7.75191 7.84735 8.41753 9.08060 9.71218 10.27553 11.14252 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.014342 B = 0.009860 C = 0.007730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.786726 B = 2838.934138 C = 3621.586349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.169 3.831 3 H 0.060 0.940 4 C -0.177 4.177 5 C 0.449 3.551 6 F -0.147 7.147 7 F -0.208 7.208 8 F -0.195 7.195 9 N -0.566 5.566 10 C -0.247 4.247 11 H 0.059 0.941 12 C 0.016 3.984 13 N -0.883 5.883 14 Si 0.889 3.111 15 H -0.281 1.281 16 H -0.291 1.291 17 H -0.282 1.282 18 C 0.172 3.828 19 C -0.059 4.059 20 C -0.095 4.095 21 C -0.127 4.127 22 C -0.145 4.145 23 C -0.127 4.127 24 C -0.121 4.121 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.057 0.943 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.256 0.744 31 H 0.109 0.891 32 H 0.032 0.968 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.340 4.616 -6.195 8.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.061 3.939 3 H 0.078 0.922 4 C -0.217 4.217 5 C 0.395 3.605 6 F -0.128 7.128 7 F -0.189 7.189 8 F -0.176 7.176 9 N -0.285 5.285 10 C -0.377 4.377 11 H 0.077 0.923 12 C -0.184 4.184 13 N -0.525 5.525 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.217 1.217 17 H -0.208 1.208 18 C 0.046 3.954 19 C -0.062 4.062 20 C -0.114 4.114 21 C -0.145 4.145 22 C -0.163 4.163 23 C -0.145 4.145 24 C -0.140 4.140 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.127 0.873 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.051 0.949 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.273 4.574 -6.000 8.671 hybrid contribution 0.578 -1.096 0.000 1.239 sum 4.851 3.479 -6.000 8.464 Atomic orbital electron populations 1.22079 0.96548 1.01591 1.00315 1.20331 0.93407 0.94090 0.86095 0.92173 1.23369 0.88206 1.07095 1.03013 1.20670 0.93108 0.73188 0.73576 1.93383 1.86641 1.83860 1.48918 1.93097 1.91216 1.81637 1.52980 1.93094 1.93772 1.34607 1.96147 1.43789 1.61172 1.05431 1.18080 1.18787 1.43340 0.82284 0.93246 0.92321 1.24992 0.98408 0.97221 0.97795 1.69958 1.43407 1.35602 1.03502 0.86593 0.78817 0.85751 0.77034 1.20724 1.21651 1.20799 1.20131 0.83868 0.94570 0.96824 1.21102 0.98770 0.92562 0.93777 1.21007 0.92646 0.98065 0.99647 1.21019 0.95614 0.98265 0.99585 1.20824 0.98659 0.96210 1.00649 1.20894 0.94263 0.98655 1.00667 1.21006 0.94575 0.99159 0.99271 0.92178 0.94742 0.92340 0.87292 0.89390 0.93416 0.87350 0.94947 0.86668 0.87564 0.87739 0.87732 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.20 37.16 0.34 -2.25 16 2 C 0.17 3.15 2.67 -67.93 -0.18 2.96 16 3 H 0.06 1.08 7.37 -51.93 -0.38 0.70 16 4 C -0.18 -3.00 4.64 -26.73 -0.12 -3.13 16 5 C 0.45 8.21 3.08 37.16 0.11 8.32 16 6 F -0.15 -3.10 10.62 2.25 0.02 -3.08 16 7 F -0.21 -3.74 17.32 2.25 0.04 -3.70 16 8 F -0.19 -3.44 14.35 2.25 0.03 -3.41 16 9 N -0.57 -12.43 1.39 -167.03 -0.23 -12.66 16 10 C -0.25 -6.02 7.76 -15.06 -0.12 -6.14 16 11 H 0.06 1.45 6.44 -52.49 -0.34 1.12 16 12 C 0.02 0.41 4.95 -17.43 -0.09 0.33 16 13 N -0.88 -23.38 11.36 55.49 0.63 -22.75 16 14 Si 0.89 20.62 29.61 -169.99 -5.03 15.59 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.17 3.77 5.37 -5.19 -0.03 3.74 16 19 C -0.06 -1.20 3.40 -104.63 -0.36 -1.56 16 20 C -0.09 -1.94 8.90 -39.58 -0.35 -2.29 16 21 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 22 C -0.14 -2.45 10.05 -39.58 -0.40 -2.85 16 23 C -0.13 -2.17 10.05 -39.58 -0.40 -2.56 16 24 C -0.12 -2.23 6.64 -39.58 -0.26 -2.50 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 1.10 8.01 -51.93 -0.42 0.68 16 28 H 0.11 1.96 6.49 -51.93 -0.34 1.62 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.11 2.70 5.31 -51.93 -0.28 2.42 16 32 H 0.03 0.68 7.93 -51.93 -0.41 0.27 16 33 H 0.12 2.52 8.06 -52.48 -0.42 2.10 16 34 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 35 H 0.10 1.50 8.06 -52.49 -0.42 1.07 16 36 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.11 1.89 7.70 -52.49 -0.40 1.48 16 LS Contribution 306.94 15.07 4.63 4.63 Total: -1.00 -26.10 306.94 -6.82 -32.92 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -4.66 Total: 3.08 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -2.24 Total: -10.62 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.40 Total: -35.41 kcal Atomic # 9 Polarization: -10.28 SS G_CDS: 0.10 Total: -10.19 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.10 -6.82 -32.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255656295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.848 kcal (2) G-P(sol) polarization free energy of solvation -26.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds