Wall clock time and date at job start Tue Mar 31 2020 06:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47289 * 2 1 4 4 C 1.52996 * 109.46905 * 239.99795 * 2 1 3 5 5 C 1.53005 * 109.47280 * 174.37638 * 4 2 1 6 6 F 1.39899 * 109.46531 * 60.00023 * 5 4 2 7 7 F 1.39895 * 109.47191 * 180.02562 * 5 4 2 8 8 F 1.39897 * 109.46983 * 300.00372 * 5 4 2 9 9 N 1.46497 * 109.46632 * 120.00202 * 2 1 3 10 10 C 1.36940 * 120.00204 * 67.72090 * 9 2 1 11 11 H 1.07992 * 120.00212 * 34.87112 * 10 9 2 12 12 C 1.38809 * 119.99708 * 214.87586 * 10 9 2 13 13 N 1.31621 * 120.00275 * 22.66406 * 12 10 9 14 14 Si 1.86798 * 120.00245 * 202.65851 * 12 10 9 15 15 H 1.48495 * 109.46987 * 59.99999 * 14 12 10 16 16 H 1.48497 * 109.47371 * 180.02562 * 14 12 10 17 17 H 1.48509 * 109.47164 * 300.00341 * 14 12 10 18 18 C 1.46508 * 119.99985 * 247.71025 * 9 2 1 19 19 C 1.50696 * 109.47364 * 270.00565 * 18 9 2 20 20 C 1.38238 * 120.00088 * 269.72898 * 19 18 9 21 21 C 1.38234 * 119.99879 * 179.76910 * 20 19 18 22 22 C 1.38234 * 120.00138 * 0.49769 * 21 20 19 23 23 C 1.38236 * 120.00019 * 359.75382 * 22 21 20 24 24 C 1.38234 * 120.00062 * 89.99575 * 19 18 9 25 25 H 1.09001 * 109.46995 * 293.69193 * 1 2 3 26 26 H 1.09001 * 109.46699 * 53.68646 * 1 2 3 27 27 H 1.08992 * 109.47692 * 173.68657 * 1 2 3 28 28 H 1.09001 * 109.47412 * 294.38008 * 4 2 1 29 29 H 1.09002 * 109.47326 * 54.38032 * 4 2 1 30 30 H 0.96999 * 120.00437 * 180.02562 * 13 12 10 31 31 H 1.08994 * 109.46588 * 150.00218 * 18 9 2 32 32 H 1.08999 * 109.46654 * 30.00542 * 18 9 2 33 33 H 1.08003 * 119.99573 * 359.97438 * 20 19 18 34 34 H 1.08004 * 119.99423 * 180.22648 * 21 20 19 35 35 H 1.07995 * 119.99670 * 179.72393 * 22 21 20 36 36 H 1.07996 * 120.00111 * 179.97438 * 23 22 21 37 37 H 1.08000 * 120.00097 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5635 -0.6001 -1.3220 6 9 4.1322 -1.1807 -0.1833 7 9 4.0296 -1.2591 -2.4645 8 9 3.9213 0.7509 -1.3848 9 7 2.0182 -0.6907 1.1962 10 6 1.8225 -2.0387 1.3363 11 1 1.8533 -2.6819 0.4693 12 6 1.5845 -2.5785 2.5928 13 7 1.1094 -1.8183 3.5565 14 14 1.9384 -4.3840 2.9160 15 1 3.3780 -4.6571 2.6751 16 1 1.6012 -4.7100 4.3250 17 1 1.1166 -5.2204 2.0047 18 6 2.7161 0.0609 2.2424 19 6 4.1948 0.0711 1.9523 20 6 5.0055 -0.9274 2.4589 21 6 6.3612 -0.9207 2.1888 22 6 6.9078 0.0902 1.4206 23 6 6.0980 1.0916 0.9182 24 6 4.7415 1.0820 1.1841 25 1 -0.3633 0.4129 0.9411 26 1 -0.3633 0.6086 -0.8281 27 1 -0.3634 -1.0213 -0.1130 28 1 1.7611 -1.7739 -1.2003 29 1 1.5968 -0.2689 -2.1364 30 1 0.9434 -2.1954 4.4346 31 1 2.5386 -0.4113 3.2086 32 1 2.3430 1.0848 2.2644 33 1 4.5791 -1.7146 3.0630 34 1 6.9939 -1.7029 2.5816 35 1 7.9677 0.0979 1.2133 36 1 6.5251 1.8816 0.3184 37 1 4.1089 1.8647 0.7922 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255656295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:50 Heat of formation + Delta-G solvation = -113.330283 kcal Electronic energy + Delta-G solvation = -25146.242751 eV Core-core repulsion = 21280.938638 eV Total energy + Delta-G solvation = -3865.304114 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.71734 -48.31915 -48.04647 -39.95582 -38.17710 -34.63582 -33.12789 -31.53462 -30.88846 -29.58205 -27.32521 -25.20343 -24.12484 -23.20977 -21.89976 -21.43791 -19.19197 -19.04549 -18.53201 -17.75382 -17.22139 -16.89168 -16.05890 -15.90600 -15.68265 -15.30611 -15.11215 -14.99390 -14.68109 -14.59205 -14.28922 -14.22784 -14.03231 -13.73981 -13.40154 -13.34487 -13.12090 -13.06128 -12.90847 -12.63603 -12.37148 -12.25444 -12.00517 -11.79535 -11.67259 -11.51478 -11.39176 -10.45066 -9.56954 -9.28245 -8.53881 -7.77122 -5.31359 0.72803 0.75894 1.44685 1.49955 1.54070 2.18362 2.53597 3.08065 3.23337 3.32747 3.39673 3.53867 3.79642 4.18903 4.24720 4.29495 4.38646 4.42083 4.53372 4.64206 4.72312 4.83368 4.87909 4.89673 5.02957 5.10445 5.30635 5.38114 5.40198 5.61681 5.69090 5.78830 5.79728 5.86482 6.13307 6.37824 6.54600 7.21402 7.89924 8.42344 9.20117 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.014342 B = 0.009860 C = 0.007730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.786726 B = 2838.934138 C = 3621.586349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.163 3.837 3 H 0.070 0.930 4 C -0.169 4.169 5 C 0.447 3.553 6 F -0.166 7.166 7 F -0.205 7.205 8 F -0.189 7.189 9 N -0.575 5.575 10 C -0.231 4.231 11 H 0.055 0.945 12 C -0.026 4.026 13 N -0.909 5.909 14 Si 0.931 3.069 15 H -0.288 1.288 16 H -0.298 1.298 17 H -0.278 1.278 18 C 0.176 3.824 19 C -0.069 4.069 20 C -0.117 4.117 21 C -0.131 4.131 22 C -0.140 4.140 23 C -0.124 4.124 24 C -0.123 4.123 25 H 0.036 0.964 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.126 0.874 30 H 0.248 0.752 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.545 5.698 -8.329 11.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.057 3.943 3 H 0.089 0.911 4 C -0.208 4.208 5 C 0.393 3.607 6 F -0.147 7.147 7 F -0.187 7.187 8 F -0.170 7.170 9 N -0.294 5.294 10 C -0.362 4.362 11 H 0.073 0.927 12 C -0.224 4.224 13 N -0.554 5.554 14 Si 0.761 3.239 15 H -0.214 1.214 16 H -0.224 1.224 17 H -0.204 1.204 18 C 0.050 3.950 19 C -0.071 4.071 20 C -0.137 4.137 21 C -0.149 4.149 22 C -0.158 4.158 23 C -0.142 4.142 24 C -0.142 4.142 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.116 0.884 29 H 0.144 0.856 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.104 0.896 34 H 0.142 0.858 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.483 5.658 -8.161 11.344 hybrid contribution 0.279 -1.352 0.589 1.501 sum 5.762 4.307 -7.571 10.444 Atomic orbital electron populations 1.21966 0.95717 1.01212 1.00691 1.20517 0.93998 0.94517 0.85296 0.91142 1.23301 0.87469 1.06526 1.03540 1.20808 0.93551 0.73262 0.73035 1.93355 1.87024 1.84256 1.50088 1.93101 1.91251 1.81653 1.52689 1.93099 1.93786 1.34077 1.96080 1.43892 1.61722 1.04854 1.18923 1.18866 1.40984 0.83600 0.92749 0.92748 1.25415 0.99540 0.99256 0.98150 1.70061 1.45538 1.36379 1.03421 0.85918 0.78085 0.83540 0.76401 1.21433 1.22407 1.20353 1.19905 0.85495 0.94051 0.95563 1.20852 0.97557 0.93638 0.95088 1.20901 0.94082 0.97992 1.00678 1.21237 0.94700 0.99307 0.99654 1.21207 1.00361 0.95084 0.99129 1.21254 0.93581 0.99218 1.00128 1.21071 0.95576 0.98641 0.98873 0.94448 0.90861 0.93850 0.88364 0.85590 0.94246 0.90673 0.94710 0.89561 0.85838 0.84412 0.84777 0.86606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 9.20 71.98 0.66 -3.97 16 2 C 0.16 5.83 2.67 44.99 0.12 5.95 16 3 H 0.07 2.38 7.37 -2.39 -0.02 2.36 16 4 C -0.17 -5.31 4.64 30.59 0.14 -5.17 16 5 C 0.45 15.29 3.08 71.98 0.22 15.52 16 6 F -0.17 -6.79 10.62 44.97 0.48 -6.31 16 7 F -0.21 -6.87 17.32 44.97 0.78 -6.09 16 8 F -0.19 -6.08 14.35 44.97 0.65 -5.43 16 9 N -0.57 -25.27 1.39 -682.36 -0.95 -26.22 16 10 C -0.23 -11.43 7.76 84.03 0.65 -10.77 16 11 H 0.05 2.71 6.44 -2.91 -0.02 2.69 16 12 C -0.03 -1.37 4.95 84.86 0.42 -0.95 16 13 N -0.91 -50.09 11.36 21.65 0.25 -49.84 16 14 Si 0.93 43.52 29.61 68.60 2.03 45.55 16 15 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 16 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 18 C 0.18 7.86 5.37 85.63 0.46 8.32 16 19 C -0.07 -2.78 3.40 -19.87 -0.07 -2.85 16 20 C -0.12 -4.86 8.90 22.27 0.20 -4.66 16 21 C -0.13 -4.56 10.05 22.27 0.22 -4.34 16 22 C -0.14 -4.26 10.05 22.27 0.22 -4.04 16 23 C -0.12 -3.82 10.05 22.27 0.22 -3.60 16 24 C -0.12 -4.29 6.64 22.27 0.15 -4.14 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 1.58 8.01 -2.39 -0.02 1.56 16 28 H 0.10 3.36 6.49 -2.39 -0.02 3.34 16 29 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 31 H 0.08 3.93 5.31 -2.39 -0.01 3.91 16 32 H 0.03 1.48 7.93 -2.39 -0.02 1.46 16 33 H 0.09 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.12 3.77 8.06 -2.91 -0.02 3.75 16 35 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 36 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.12 3.79 7.70 -2.91 -0.02 3.77 16 Total: -1.00 -56.75 306.94 7.93 -48.82 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 1.07 Total: 14.22 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 3.63 Total: -14.69 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -0.70 Total: -76.06 kcal Atomic # 9 Polarization: -19.74 SS G_CDS: 1.90 Total: -17.84 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -56.75 7.93 -48.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255656295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.511 kcal (2) G-P(sol) polarization free energy of solvation -56.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds