Wall clock time and date at job start Tue Mar 31 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46968 * 2 1 4 4 C 1.53000 * 109.47235 * 120.00002 * 2 1 3 5 5 C 1.52999 * 109.46915 * 185.00162 * 4 2 1 6 6 F 1.39897 * 109.47252 * 60.00232 * 5 4 2 7 7 F 1.39899 * 109.46982 * 180.02562 * 5 4 2 8 8 F 1.39901 * 109.47063 * 299.99743 * 5 4 2 9 9 N 1.46505 * 109.47267 * 240.00061 * 2 1 3 10 10 C 1.36935 * 119.99602 * 300.27905 * 9 2 1 11 11 H 1.08000 * 119.99955 * 323.94819 * 10 9 2 12 12 C 1.38817 * 119.99952 * 143.95696 * 10 9 2 13 13 N 1.31613 * 119.99872 * 160.20456 * 12 10 9 14 14 Si 1.86794 * 119.99906 * 340.19946 * 12 10 9 15 15 H 1.48502 * 109.47100 * 95.26382 * 14 12 10 16 16 H 1.48501 * 109.47051 * 215.26256 * 14 12 10 17 17 H 1.48500 * 109.47263 * 335.26410 * 14 12 10 18 18 C 1.46494 * 119.99989 * 119.99491 * 9 2 1 19 19 C 1.50702 * 109.47167 * 94.76558 * 18 9 2 20 20 C 1.38236 * 119.99824 * 262.35107 * 19 18 9 21 21 C 1.38239 * 120.00119 * 179.76547 * 20 19 18 22 22 C 1.38241 * 119.99569 * 0.49707 * 21 20 19 23 23 C 1.38233 * 120.00002 * 359.75373 * 22 21 20 24 24 C 1.38231 * 120.00112 * 82.61368 * 19 18 9 25 25 H 1.09002 * 109.47012 * 299.99908 * 1 2 3 26 26 H 1.09000 * 109.47179 * 59.99939 * 1 2 3 27 27 H 1.08997 * 109.46968 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47149 * 304.99770 * 4 2 1 29 29 H 1.08999 * 109.47177 * 65.00154 * 4 2 1 30 30 H 0.97002 * 119.99872 * 179.97438 * 13 12 10 31 31 H 1.08998 * 109.47154 * 214.76462 * 18 9 2 32 32 H 1.09003 * 109.47222 * 334.76283 * 18 9 2 33 33 H 1.08002 * 120.00458 * 359.97438 * 20 19 18 34 34 H 1.08001 * 120.00126 * 180.23116 * 21 20 19 35 35 H 1.07998 * 119.99735 * 179.72415 * 22 21 20 36 36 H 1.07999 * 119.99934 * 179.97438 * 23 22 21 37 37 H 1.07997 * 120.00377 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 9 3.9349 0.7348 1.3697 7 9 4.0313 -1.2732 2.4556 8 9 4.1227 -1.2030 0.1742 9 7 2.0184 -0.6906 -1.1962 10 6 1.6829 -1.9999 -1.4157 11 1 1.6007 -2.6832 -0.5834 12 6 1.4485 -2.4491 -2.7082 13 7 1.5122 -3.7354 -2.9795 14 14 1.0427 -1.2279 -4.0621 15 1 2.2837 -0.8721 -4.7961 16 1 0.0687 -1.8374 -5.0029 17 1 0.4531 -0.0033 -3.4638 18 6 2.8605 0.0214 -2.1605 19 6 4.3117 -0.2405 -1.8497 20 6 5.0379 0.6783 -1.1153 21 6 6.3678 0.4359 -0.8260 22 6 6.9742 -0.7205 -1.2799 23 6 6.2493 -1.6368 -2.0187 24 6 4.9181 -1.3968 -2.3035 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6055 -0.2617 2.1370 29 1 1.7517 -1.7715 1.2056 30 1 1.3481 -4.0493 -3.8825 31 1 2.6357 -0.3293 -3.1678 32 1 2.6623 1.0913 -2.0957 33 1 4.5655 1.5840 -0.7646 34 1 6.9342 1.1520 -0.2491 35 1 8.0143 -0.9078 -1.0577 36 1 6.7231 -2.5401 -2.3736 37 1 4.3520 -2.1125 -2.8813 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255656298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:53 Heat of formation + Delta-G solvation = -84.520250 kcal Electronic energy + Delta-G solvation = -25302.180113 eV Core-core repulsion = 21438.125296 eV Total energy + Delta-G solvation = -3864.054817 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.32441 -46.93999 -46.62709 -38.61245 -36.84222 -33.05316 -31.76911 -30.16236 -29.66098 -28.28081 -25.61650 -23.89820 -22.69242 -21.81505 -20.68877 -19.78807 -17.86653 -17.61883 -17.02846 -16.40779 -15.79332 -15.35932 -15.02258 -14.57826 -14.11398 -13.87407 -13.61566 -13.38942 -13.31283 -13.14121 -12.89036 -12.73957 -12.64191 -12.39347 -12.19117 -11.96926 -11.91736 -11.65782 -11.42246 -11.03825 -10.86523 -10.58485 -10.52095 -10.35057 -10.13840 -9.79388 -9.55583 -8.60065 -8.15889 -7.80802 -7.00361 -6.04123 -3.47256 2.07113 2.15266 3.26160 3.42480 3.44430 3.57823 4.39430 4.45641 4.60313 4.76584 4.85048 5.02837 5.26113 5.49636 5.52694 5.59201 5.67330 5.74878 5.85491 5.88664 6.01310 6.10717 6.18295 6.23046 6.30769 6.36270 6.44458 6.64332 6.72135 6.80723 6.93092 7.12759 7.23735 7.46900 7.75185 7.95141 8.28548 8.85228 9.62320 9.99081 11.10512 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.015503 B = 0.010386 C = 0.007768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.635146 B = 2695.289211 C = 3603.808432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.173 3.827 3 H 0.064 0.936 4 C -0.178 4.178 5 C 0.445 3.555 6 F -0.197 7.197 7 F -0.206 7.206 8 F -0.140 7.140 9 N -0.591 5.591 10 C -0.257 4.257 11 H 0.080 0.920 12 C 0.040 3.960 13 N -0.897 5.897 14 Si 0.876 3.124 15 H -0.285 1.285 16 H -0.304 1.304 17 H -0.269 1.269 18 C 0.167 3.833 19 C -0.060 4.060 20 C -0.123 4.123 21 C -0.129 4.129 22 C -0.140 4.140 23 C -0.122 4.122 24 C -0.088 4.088 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.263 0.737 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.020 8.332 5.851 10.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.065 3.935 3 H 0.082 0.918 4 C -0.218 4.218 5 C 0.391 3.609 6 F -0.178 7.178 7 F -0.188 7.188 8 F -0.121 7.121 9 N -0.312 5.312 10 C -0.385 4.385 11 H 0.098 0.902 12 C -0.161 4.161 13 N -0.538 5.538 14 Si 0.708 3.292 15 H -0.213 1.213 16 H -0.232 1.232 17 H -0.194 1.194 18 C 0.043 3.957 19 C -0.063 4.063 20 C -0.142 4.142 21 C -0.147 4.147 22 C -0.159 4.159 23 C -0.141 4.141 24 C -0.107 4.107 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.129 0.871 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.987 8.185 5.723 10.754 hybrid contribution 0.130 0.411 -0.674 0.800 sum 4.117 8.596 5.049 10.786 Atomic orbital electron populations 1.22054 0.95911 1.02871 1.00026 1.20316 0.93708 0.93947 0.85489 0.91811 1.23396 0.88367 1.07274 1.02774 1.20731 0.93116 0.73210 0.73850 1.93079 1.93540 1.35011 1.96216 1.93104 1.91150 1.81524 1.52988 1.93494 1.86935 1.83754 1.47947 1.44208 1.53360 1.11000 1.22632 1.18567 1.42760 0.83400 0.93791 0.90233 1.25326 0.98106 0.95118 0.97542 1.69838 1.50078 1.13352 1.20498 0.86975 0.77612 0.82332 0.82309 1.21304 1.23244 1.19403 1.20311 0.86092 0.95144 0.94189 1.20697 0.96721 0.93865 0.94982 1.20988 0.94332 0.99306 0.99535 1.20858 0.95231 0.97551 1.01090 1.20866 0.99076 0.95401 1.00525 1.21038 0.94904 0.98729 0.99390 1.21088 0.93880 0.96520 0.99242 0.93939 0.92712 0.91297 0.89226 0.87061 0.92669 0.92543 0.93064 0.87220 0.87573 0.87558 0.87218 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.16 37.16 0.34 -2.11 16 2 C 0.17 3.04 2.69 -67.93 -0.18 2.86 16 3 H 0.06 1.04 7.25 -51.93 -0.38 0.67 16 4 C -0.18 -2.92 4.74 -26.73 -0.13 -3.05 16 5 C 0.44 7.95 3.09 37.16 0.11 8.06 16 6 F -0.20 -3.32 14.42 2.25 0.03 -3.29 16 7 F -0.21 -3.70 17.32 2.25 0.04 -3.66 16 8 F -0.14 -2.90 9.21 2.25 0.02 -2.88 16 9 N -0.59 -12.52 1.09 -167.02 -0.18 -12.70 16 10 C -0.26 -6.38 8.34 -15.06 -0.13 -6.51 16 11 H 0.08 2.16 6.89 -52.49 -0.36 1.80 16 12 C 0.04 1.05 5.37 -17.43 -0.09 0.96 16 13 N -0.90 -25.66 13.97 55.49 0.78 -24.89 16 14 Si 0.88 21.03 24.79 -169.99 -4.21 16.81 16 15 H -0.28 -6.76 6.73 56.52 0.38 -6.38 16 16 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 17 H -0.27 -6.23 7.09 56.52 0.40 -5.83 16 18 C 0.17 3.47 4.75 -5.20 -0.02 3.44 16 19 C -0.06 -1.19 3.21 -104.62 -0.34 -1.53 16 20 C -0.12 -2.18 6.40 -39.58 -0.25 -2.43 16 21 C -0.13 -2.15 9.84 -39.58 -0.39 -2.54 16 22 C -0.14 -2.35 10.05 -39.58 -0.40 -2.74 16 23 C -0.12 -2.25 10.01 -39.58 -0.40 -2.65 16 24 C -0.09 -1.84 8.65 -39.58 -0.34 -2.18 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 1.23 7.65 -51.93 -0.40 0.84 16 28 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.11 2.00 6.80 -51.93 -0.35 1.64 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.06 1.28 2.62 -51.93 -0.14 1.15 16 32 H 0.05 0.95 7.71 -51.93 -0.40 0.55 16 33 H 0.11 1.80 7.46 -52.49 -0.39 1.41 16 34 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.12 2.89 8.06 -52.49 -0.42 2.47 16 LS Contribution 299.37 15.07 4.51 4.51 Total: -1.00 -27.70 299.37 -5.76 -33.47 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.53 Total: 3.05 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -2.21 Total: -10.42 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.59 Total: -37.59 kcal Atomic # 9 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.21 Total: 16.81 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.70 -5.76 -33.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255656298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.054 kcal (2) G-P(sol) polarization free energy of solvation -27.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds