Wall clock time and date at job start Tue Mar 31 2020 06:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46968 * 2 1 4 4 C 1.53000 * 109.47235 * 120.00002 * 2 1 3 5 5 C 1.52999 * 109.46915 * 185.00162 * 4 2 1 6 6 F 1.39897 * 109.47252 * 60.00232 * 5 4 2 7 7 F 1.39899 * 109.46982 * 180.02562 * 5 4 2 8 8 F 1.39901 * 109.47063 * 299.99743 * 5 4 2 9 9 N 1.46505 * 109.47267 * 240.00061 * 2 1 3 10 10 C 1.36935 * 119.99602 * 300.27905 * 9 2 1 11 11 H 1.08000 * 119.99955 * 323.94819 * 10 9 2 12 12 C 1.38817 * 119.99952 * 143.95696 * 10 9 2 13 13 N 1.31613 * 119.99872 * 160.20456 * 12 10 9 14 14 Si 1.86794 * 119.99906 * 340.19946 * 12 10 9 15 15 H 1.48502 * 109.47100 * 95.26382 * 14 12 10 16 16 H 1.48501 * 109.47051 * 215.26256 * 14 12 10 17 17 H 1.48500 * 109.47263 * 335.26410 * 14 12 10 18 18 C 1.46494 * 119.99989 * 119.99491 * 9 2 1 19 19 C 1.50702 * 109.47167 * 94.76558 * 18 9 2 20 20 C 1.38236 * 119.99824 * 262.35107 * 19 18 9 21 21 C 1.38239 * 120.00119 * 179.76547 * 20 19 18 22 22 C 1.38241 * 119.99569 * 0.49707 * 21 20 19 23 23 C 1.38233 * 120.00002 * 359.75373 * 22 21 20 24 24 C 1.38231 * 120.00112 * 82.61368 * 19 18 9 25 25 H 1.09002 * 109.47012 * 299.99908 * 1 2 3 26 26 H 1.09000 * 109.47179 * 59.99939 * 1 2 3 27 27 H 1.08997 * 109.46968 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47149 * 304.99770 * 4 2 1 29 29 H 1.08999 * 109.47177 * 65.00154 * 4 2 1 30 30 H 0.97002 * 119.99872 * 179.97438 * 13 12 10 31 31 H 1.08998 * 109.47154 * 214.76462 * 18 9 2 32 32 H 1.09003 * 109.47222 * 334.76283 * 18 9 2 33 33 H 1.08002 * 120.00458 * 359.97438 * 20 19 18 34 34 H 1.08001 * 120.00126 * 180.23116 * 21 20 19 35 35 H 1.07998 * 119.99735 * 179.72415 * 22 21 20 36 36 H 1.07999 * 119.99934 * 179.97438 * 23 22 21 37 37 H 1.07997 * 120.00377 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 9 3.9349 0.7348 1.3697 7 9 4.0313 -1.2732 2.4556 8 9 4.1227 -1.2030 0.1742 9 7 2.0184 -0.6906 -1.1962 10 6 1.6829 -1.9999 -1.4157 11 1 1.6007 -2.6832 -0.5834 12 6 1.4485 -2.4491 -2.7082 13 7 1.5122 -3.7354 -2.9795 14 14 1.0427 -1.2279 -4.0621 15 1 2.2837 -0.8721 -4.7961 16 1 0.0687 -1.8374 -5.0029 17 1 0.4531 -0.0033 -3.4638 18 6 2.8605 0.0214 -2.1605 19 6 4.3117 -0.2405 -1.8497 20 6 5.0379 0.6783 -1.1153 21 6 6.3678 0.4359 -0.8260 22 6 6.9742 -0.7205 -1.2799 23 6 6.2493 -1.6368 -2.0187 24 6 4.9181 -1.3968 -2.3035 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6055 -0.2617 2.1370 29 1 1.7517 -1.7715 1.2056 30 1 1.3481 -4.0493 -3.8825 31 1 2.6357 -0.3293 -3.1678 32 1 2.6623 1.0913 -2.0957 33 1 4.5655 1.5840 -0.7646 34 1 6.9342 1.1520 -0.2491 35 1 8.0143 -0.9078 -1.0577 36 1 6.7231 -2.5401 -2.3736 37 1 4.3520 -2.1125 -2.8813 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255656298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:52 Heat of formation + Delta-G solvation = -98.293685 kcal Electronic energy + Delta-G solvation = -25302.777374 eV Core-core repulsion = 21438.125296 eV Total energy + Delta-G solvation = -3864.652078 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.74253 -48.32910 -48.10191 -40.07768 -38.38193 -34.65604 -33.56231 -31.58671 -31.22811 -29.65675 -27.34203 -25.50947 -24.14100 -23.25726 -22.15156 -21.38258 -19.32118 -19.06829 -18.62443 -17.93987 -17.31223 -17.09636 -16.59663 -16.03593 -15.63878 -15.30020 -15.07450 -14.95560 -14.71430 -14.66231 -14.42264 -14.33396 -14.11777 -14.00993 -13.76060 -13.45616 -13.35922 -13.08371 -12.91214 -12.66087 -12.43418 -12.13852 -12.04843 -11.84498 -11.66007 -11.49687 -11.33704 -10.58343 -9.58323 -9.25715 -8.78837 -8.09552 -5.47220 0.66101 0.71885 1.33165 1.43359 1.51545 2.18545 2.46707 2.91438 3.21962 3.25325 3.37344 3.40911 3.60791 4.07313 4.13686 4.25375 4.29895 4.37744 4.43993 4.49259 4.58883 4.70253 4.76037 4.88252 4.89158 4.94360 5.06124 5.26631 5.32163 5.35074 5.58004 5.74127 5.79485 5.95908 6.03959 6.27148 6.34615 7.00737 7.68315 8.08632 9.09508 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.015503 B = 0.010386 C = 0.007768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.635146 B = 2695.289211 C = 3603.808432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.166 3.834 3 H 0.088 0.912 4 C -0.171 4.171 5 C 0.443 3.557 6 F -0.186 7.186 7 F -0.207 7.207 8 F -0.160 7.160 9 N -0.599 5.599 10 C -0.218 4.218 11 H 0.048 0.952 12 C -0.014 4.014 13 N -0.949 5.949 14 Si 0.930 3.070 15 H -0.288 1.288 16 H -0.320 1.320 17 H -0.250 1.250 18 C 0.162 3.838 19 C -0.070 4.070 20 C -0.120 4.120 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.132 4.132 24 C -0.115 4.115 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.130 0.870 29 H 0.089 0.911 30 H 0.257 0.743 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.118 0.882 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.934 11.493 7.694 14.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.060 3.940 3 H 0.106 0.894 4 C -0.211 4.211 5 C 0.389 3.611 6 F -0.168 7.168 7 F -0.189 7.189 8 F -0.141 7.141 9 N -0.320 5.320 10 C -0.348 4.348 11 H 0.066 0.934 12 C -0.209 4.209 13 N -0.594 5.594 14 Si 0.762 3.238 15 H -0.216 1.216 16 H -0.250 1.250 17 H -0.174 1.174 18 C 0.037 3.963 19 C -0.072 4.072 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.150 4.150 24 C -0.135 4.135 25 H 0.100 0.900 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.148 0.852 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.147 0.853 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.137 0.863 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.905 11.402 7.596 14.552 hybrid contribution -0.039 -0.527 -1.103 1.223 sum 4.866 10.875 6.494 13.569 Atomic orbital electron populations 1.21991 0.94763 1.01799 1.01689 1.20609 0.94604 0.94801 0.83973 0.89361 1.23350 0.87577 1.06247 1.03928 1.20895 0.93628 0.73414 0.73189 1.93091 1.93526 1.34066 1.96127 1.93102 1.91230 1.81668 1.52921 1.93472 1.87325 1.84199 1.49123 1.44299 1.53995 1.09892 1.23816 1.18339 1.39454 0.84729 0.92319 0.93425 1.25783 0.99513 0.95984 0.99649 1.69963 1.53666 1.15291 1.20520 0.86092 0.76715 0.81026 0.80007 1.21631 1.25040 1.17391 1.20359 0.86767 0.96355 0.92779 1.20587 0.96448 0.94184 0.96023 1.21147 0.94815 0.99215 0.98661 1.21268 0.94946 0.97826 1.00279 1.21221 1.00404 0.94698 0.99012 1.21204 0.94160 0.99811 0.99858 1.20904 0.95037 0.96814 1.00699 0.89950 0.93382 0.93721 0.85232 0.89211 0.93377 0.94931 0.90212 0.85314 0.84331 0.84416 0.86348 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 9.16 71.98 0.66 -3.64 16 2 C 0.17 5.37 2.69 44.99 0.12 5.49 16 3 H 0.09 2.48 7.25 -2.39 -0.02 2.46 16 4 C -0.17 -5.19 4.74 30.59 0.15 -5.04 16 5 C 0.44 14.67 3.09 71.98 0.22 14.90 16 6 F -0.19 -5.52 14.42 44.97 0.65 -4.87 16 7 F -0.21 -6.99 17.32 44.97 0.78 -6.21 16 8 F -0.16 -6.43 9.21 44.97 0.41 -6.01 16 9 N -0.60 -24.80 1.09 -682.34 -0.74 -25.54 16 10 C -0.22 -11.14 8.34 84.03 0.70 -10.44 16 11 H 0.05 2.72 6.89 -2.91 -0.02 2.70 16 12 C -0.01 -0.75 5.37 84.86 0.46 -0.29 16 13 N -0.95 -57.46 13.97 21.65 0.30 -57.16 16 14 Si 0.93 44.89 24.79 68.60 1.70 46.59 16 15 H -0.29 -13.82 6.73 99.48 0.67 -13.15 16 16 H -0.32 -16.15 7.11 99.48 0.71 -15.44 16 17 H -0.25 -11.09 7.09 99.48 0.71 -10.38 16 18 C 0.16 6.49 4.75 85.63 0.41 6.90 16 19 C -0.07 -2.70 3.21 -19.87 -0.06 -2.76 16 20 C -0.12 -3.87 6.40 22.27 0.14 -3.72 16 21 C -0.13 -3.68 9.84 22.27 0.22 -3.46 16 22 C -0.14 -4.12 10.05 22.27 0.22 -3.90 16 23 C -0.13 -4.78 10.01 22.27 0.22 -4.56 16 24 C -0.12 -4.90 8.65 22.27 0.19 -4.70 16 25 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.04 1.54 7.65 -2.39 -0.02 1.52 16 28 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.09 3.17 6.80 -2.39 -0.02 3.15 16 30 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 31 H 0.03 1.48 2.62 -2.39 -0.01 1.48 16 32 H 0.08 2.70 7.71 -2.39 -0.02 2.68 16 33 H 0.13 3.64 7.46 -2.91 -0.02 3.62 16 34 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 36 H 0.12 3.92 8.06 -2.91 -0.02 3.90 16 37 H 0.08 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -62.65 299.37 7.79 -54.86 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.04 Total: 13.57 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 3.65 Total: -15.23 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -0.44 Total: -82.70 kcal Atomic # 9 Polarization: -18.94 SS G_CDS: 1.84 Total: -17.10 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.70 Total: 46.59 kcal Total: -62.65 7.79 -54.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255656298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.430 kcal (2) G-P(sol) polarization free energy of solvation -62.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds