Wall clock time and date at job start Tue Mar 31 2020 06:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46939 * 2 1 4 4 C 1.50697 * 109.47300 * 119.99757 * 2 1 3 5 5 H 1.08001 * 120.00190 * 119.99960 * 4 2 1 6 6 C 1.37874 * 120.00216 * 300.00517 * 4 2 1 7 7 N 1.31518 * 120.00481 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99824 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47106 * 90.00130 * 8 6 4 10 10 H 1.48504 * 109.47099 * 210.00160 * 8 6 4 11 11 H 1.48498 * 109.46944 * 330.00023 * 8 6 4 12 12 O 1.45206 * 109.47435 * 240.00215 * 2 1 3 13 13 C 1.34229 * 116.99914 * 89.99790 * 12 2 1 14 14 O 1.20823 * 119.99967 * 359.97438 * 13 12 2 15 15 C 1.50696 * 119.99611 * 180.02562 * 13 12 2 16 16 C 1.50698 * 109.47116 * 180.02562 * 15 13 12 17 17 C 1.34244 * 126.50201 * 264.97783 * 16 15 13 18 18 N 1.36833 * 109.93092 * 180.02562 * 17 16 15 19 19 C 1.46499 * 125.06296 * 180.02562 * 18 17 16 20 20 C 1.37692 * 109.87406 * 0.26052 * 18 17 16 21 21 C 1.39121 * 133.50130 * 180.46554 * 20 18 17 22 22 C 1.37756 * 119.77586 * 179.54775 * 21 20 18 23 23 C 1.38822 * 120.66581 * 359.75994 * 22 21 20 24 24 C 1.36632 * 120.53342 * 359.97438 * 23 22 21 25 25 C 1.39629 * 119.76073 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.46631 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47367 * 300.00001 * 1 2 3 28 28 H 1.09001 * 109.47030 * 60.00351 * 1 2 3 29 29 H 0.96995 * 120.00450 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47346 * 60.00359 * 15 13 12 31 31 H 1.09001 * 109.47615 * 299.99885 * 15 13 12 32 32 H 1.08003 * 125.03378 * 359.97438 * 17 16 15 33 33 H 1.09002 * 109.47391 * 90.01941 * 19 18 17 34 34 H 1.09001 * 109.46813 * 330.01997 * 19 18 17 35 35 H 1.09004 * 109.47041 * 210.02124 * 19 18 17 36 36 H 1.07994 * 120.11545 * 359.27993 * 21 20 18 37 37 H 1.08002 * 119.66262 * 179.73573 * 22 21 20 38 38 H 1.08007 * 119.73805 * 179.97438 * 23 22 21 39 39 H 1.07991 * 120.11963 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8595 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9770 1.9954 3.9070 11 1 0.8490 2.1773 1.4922 12 8 2.0141 -0.6844 -1.1856 13 6 2.2172 0.0641 -2.2811 14 8 1.9973 1.2518 -2.2506 15 6 2.7184 -0.5771 -3.5494 16 6 2.8615 0.4731 -4.6207 17 6 1.9539 0.7853 -5.5592 18 7 2.4344 1.7872 -6.3577 19 6 1.7146 2.3821 -7.4866 20 6 3.6972 2.1494 -5.9455 21 6 4.6145 3.0967 -6.3891 22 6 5.8255 3.2299 -5.7460 23 6 6.1393 2.4311 -4.6549 24 6 5.2511 1.4983 -4.1991 25 6 4.0178 1.3463 -4.8359 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.9026 -0.5284 4.4376 30 1 2.0089 -1.3368 -3.8775 31 1 3.6873 -1.0408 -3.3640 32 1 0.9879 0.3147 -5.6685 33 1 1.1255 3.2295 -7.1360 34 1 1.0526 1.6374 -7.9284 35 1 2.4302 2.7220 -8.2353 36 1 4.3798 3.7225 -7.2374 37 1 6.5379 3.9629 -6.0946 38 1 7.0933 2.5480 -4.1622 39 1 5.5024 0.8802 -3.3500 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341788215.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:46 Heat of formation + Delta-G solvation = -20.585555 kcal Electronic energy + Delta-G solvation = -22112.244030 eV Core-core repulsion = 18792.818369 eV Total energy + Delta-G solvation = -3319.425660 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.37852 -39.48403 -37.05643 -35.89859 -33.71668 -33.13199 -30.80081 -30.33430 -29.93418 -28.42935 -25.54602 -25.17889 -22.66983 -22.15134 -21.35859 -19.98383 -19.16066 -17.19942 -16.88717 -16.58372 -16.37743 -15.68398 -15.48585 -15.29952 -15.19102 -14.27031 -14.00902 -13.90266 -13.27244 -13.02457 -12.97736 -12.86080 -12.63796 -12.34678 -12.25374 -12.04882 -11.68835 -11.47360 -11.29401 -11.23753 -10.86166 -10.76515 -10.18670 -9.89516 -9.69072 -9.62004 -9.39274 -9.06968 -8.65168 -8.14285 -7.56292 -6.19351 -4.21122 1.15813 1.66680 2.55955 2.74507 2.99619 3.20886 3.33354 3.36615 3.74546 4.04138 4.29927 4.52152 4.65881 4.75983 4.91348 4.94589 5.12067 5.12868 5.16695 5.22670 5.30362 5.56232 5.62463 5.69642 5.75019 5.85565 5.90329 6.17496 6.21219 6.32806 6.45076 6.49873 6.65263 6.67326 6.77193 6.81454 7.09015 7.21074 7.27725 7.44642 7.60424 8.31079 8.71717 8.89156 9.38463 10.92879 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.022940 B = 0.003958 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.266995 B = 7073.125372 C = 7502.951592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.191 3.809 3 H 0.045 0.955 4 C -0.523 4.523 5 H 0.087 0.913 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.879 3.121 9 H -0.274 1.274 10 H -0.290 1.290 11 H -0.263 1.263 12 O -0.345 6.345 13 C 0.449 3.551 14 O -0.513 6.513 15 C -0.039 4.039 16 C -0.152 4.152 17 C 0.064 3.936 18 N -0.489 5.489 19 C 0.082 3.918 20 C 0.096 3.904 21 C -0.133 4.133 22 C -0.102 4.102 23 C -0.149 4.149 24 C -0.064 4.064 25 C -0.088 4.088 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.036 0.964 29 H 0.269 0.731 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.168 0.832 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 5.081 -23.139 23.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.137 3.863 3 H 0.062 0.938 4 C -0.561 4.561 5 H 0.105 0.895 6 C -0.123 4.123 7 N -0.527 5.527 8 Si 0.708 3.292 9 H -0.200 1.200 10 H -0.217 1.217 11 H -0.187 1.187 12 O -0.261 6.261 13 C 0.292 3.708 14 O -0.402 6.402 15 C -0.077 4.077 16 C -0.160 4.160 17 C -0.061 4.061 18 N -0.173 5.173 19 C -0.060 4.060 20 C -0.009 4.009 21 C -0.154 4.154 22 C -0.121 4.121 23 C -0.168 4.168 24 C -0.083 4.083 25 C -0.093 4.093 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.185 0.815 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.611 5.555 -23.145 23.857 hybrid contribution -0.835 0.982 0.311 1.326 sum 0.776 6.537 -22.834 23.764 Atomic orbital electron populations 1.22506 0.98652 1.01728 0.99693 1.20872 0.90336 0.94450 0.80669 0.93751 1.20808 1.33233 1.14743 0.87315 0.89487 1.24725 0.95671 0.96673 0.95274 1.69838 1.44875 1.40002 0.97969 0.86978 0.80742 0.83762 0.77737 1.20046 1.21713 1.18747 1.86505 1.75984 1.42854 1.20747 1.23513 0.75108 0.86187 0.86029 1.90604 1.48112 1.16918 1.84599 1.19541 1.04034 0.96102 0.88068 1.19610 0.94721 1.02195 0.99429 1.21512 0.98880 0.92396 0.93315 1.43674 1.13377 1.32389 1.27822 1.21894 0.97239 0.99253 0.87626 1.18220 0.86365 0.99131 0.97191 1.19929 0.93904 0.99303 1.02223 1.20756 0.95748 0.99447 0.96150 1.20609 1.00077 0.97830 0.98297 1.20342 0.91760 0.97756 0.98415 1.19002 0.95131 0.98386 0.96774 0.91831 0.92677 0.94533 0.92120 0.87495 0.87325 0.81505 0.91404 0.89993 0.90323 0.86716 0.86025 0.86086 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.92 9.03 37.16 0.34 -3.59 16 2 C 0.19 4.92 2.15 -27.88 -0.06 4.86 16 3 H 0.04 1.22 6.21 -51.93 -0.32 0.90 16 4 C -0.52 -15.24 9.48 -34.44 -0.33 -15.57 16 5 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 6 C 0.08 2.32 5.45 -17.82 -0.10 2.22 16 7 N -0.89 -27.06 13.96 55.43 0.77 -26.29 16 8 Si 0.88 22.09 24.37 -169.99 -4.14 17.95 16 9 H -0.27 -6.58 6.87 56.52 0.39 -6.19 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.26 -6.58 6.53 56.52 0.37 -6.21 16 12 O -0.34 -7.98 9.86 -39.25 -0.39 -8.37 16 13 C 0.45 9.09 7.92 36.00 0.29 9.37 16 14 O -0.51 -11.92 15.25 -18.75 -0.29 -12.21 16 15 C -0.04 -0.57 6.34 -29.04 -0.18 -0.75 16 16 C -0.15 -2.25 4.81 -102.71 -0.49 -2.74 16 17 C 0.06 0.80 11.21 -16.73 -0.19 0.61 16 18 N -0.49 -5.82 3.18 -121.80 -0.39 -6.20 16 19 C 0.08 0.59 11.03 59.85 0.66 1.25 16 20 C 0.10 1.33 6.81 -83.98 -0.57 0.76 16 21 C -0.13 -1.57 9.97 -39.43 -0.39 -1.96 16 22 C -0.10 -1.16 10.01 -39.54 -0.40 -1.55 16 23 C -0.15 -1.86 9.97 -39.95 -0.40 -2.26 16 24 C -0.06 -0.94 10.05 -39.64 -0.40 -1.34 16 25 C -0.09 -1.37 6.35 -105.13 -0.67 -2.03 16 26 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.05 1.30 3.27 -51.93 -0.17 1.13 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.17 1.55 8.06 -52.48 -0.42 1.13 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 36 H 0.11 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 330.80 15.07 4.99 4.99 Total: -1.00 -35.28 330.80 -7.51 -42.79 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.17 Total: 0.08 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.89 Total: -12.73 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.39 Total: -32.49 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.67 Total: -20.57 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.14 Total: 17.95 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.28 -7.51 -42.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341788215.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.200 kcal (2) G-P(sol) polarization free energy of solvation -35.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds