Wall clock time and date at job start Tue Mar 31 2020 06:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46939 * 2 1 4 4 C 1.50697 * 109.47300 * 119.99757 * 2 1 3 5 5 H 1.08001 * 120.00190 * 119.99960 * 4 2 1 6 6 C 1.37874 * 120.00216 * 300.00517 * 4 2 1 7 7 N 1.31518 * 120.00481 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99824 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47106 * 90.00130 * 8 6 4 10 10 H 1.48504 * 109.47099 * 210.00160 * 8 6 4 11 11 H 1.48498 * 109.46944 * 330.00023 * 8 6 4 12 12 O 1.45206 * 109.47435 * 240.00215 * 2 1 3 13 13 C 1.34229 * 116.99914 * 89.99790 * 12 2 1 14 14 O 1.20823 * 119.99967 * 359.97438 * 13 12 2 15 15 C 1.50696 * 119.99611 * 180.02562 * 13 12 2 16 16 C 1.50698 * 109.47116 * 180.02562 * 15 13 12 17 17 C 1.34244 * 126.50201 * 264.97783 * 16 15 13 18 18 N 1.36833 * 109.93092 * 180.02562 * 17 16 15 19 19 C 1.46499 * 125.06296 * 180.02562 * 18 17 16 20 20 C 1.37692 * 109.87406 * 0.26052 * 18 17 16 21 21 C 1.39121 * 133.50130 * 180.46554 * 20 18 17 22 22 C 1.37756 * 119.77586 * 179.54775 * 21 20 18 23 23 C 1.38822 * 120.66581 * 359.75994 * 22 21 20 24 24 C 1.36632 * 120.53342 * 359.97438 * 23 22 21 25 25 C 1.39629 * 119.76073 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.46631 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47367 * 300.00001 * 1 2 3 28 28 H 1.09001 * 109.47030 * 60.00351 * 1 2 3 29 29 H 0.96995 * 120.00450 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47346 * 60.00359 * 15 13 12 31 31 H 1.09001 * 109.47615 * 299.99885 * 15 13 12 32 32 H 1.08003 * 125.03378 * 359.97438 * 17 16 15 33 33 H 1.09002 * 109.47391 * 90.01941 * 19 18 17 34 34 H 1.09001 * 109.46813 * 330.01997 * 19 18 17 35 35 H 1.09004 * 109.47041 * 210.02124 * 19 18 17 36 36 H 1.07994 * 120.11545 * 359.27993 * 21 20 18 37 37 H 1.08002 * 119.66262 * 179.73573 * 22 21 20 38 38 H 1.08007 * 119.73805 * 179.97438 * 23 22 21 39 39 H 1.07991 * 120.11963 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8595 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9770 1.9954 3.9070 11 1 0.8490 2.1773 1.4922 12 8 2.0141 -0.6844 -1.1856 13 6 2.2172 0.0641 -2.2811 14 8 1.9973 1.2518 -2.2506 15 6 2.7184 -0.5771 -3.5494 16 6 2.8615 0.4731 -4.6207 17 6 1.9539 0.7853 -5.5592 18 7 2.4344 1.7872 -6.3577 19 6 1.7146 2.3821 -7.4866 20 6 3.6972 2.1494 -5.9455 21 6 4.6145 3.0967 -6.3891 22 6 5.8255 3.2299 -5.7460 23 6 6.1393 2.4311 -4.6549 24 6 5.2511 1.4983 -4.1991 25 6 4.0178 1.3463 -4.8359 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.9026 -0.5284 4.4376 30 1 2.0089 -1.3368 -3.8775 31 1 3.6873 -1.0408 -3.3640 32 1 0.9879 0.3147 -5.6685 33 1 1.1255 3.2295 -7.1360 34 1 1.0526 1.6374 -7.9284 35 1 2.4302 2.7220 -8.2353 36 1 4.3798 3.7225 -7.2374 37 1 6.5379 3.9629 -6.0946 38 1 7.0933 2.5480 -4.1622 39 1 5.5024 0.8802 -3.3500 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341788215.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:46 Heat of formation + Delta-G solvation = -41.417402 kcal Electronic energy + Delta-G solvation = -22113.147366 eV Core-core repulsion = 18792.818369 eV Total energy + Delta-G solvation = -3320.328997 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.32313 -41.17197 -37.98107 -37.65524 -35.27630 -34.71890 -32.72492 -31.23788 -31.07242 -29.36399 -27.35657 -26.40525 -23.91164 -23.53168 -22.37379 -21.59531 -20.33811 -19.12624 -18.44768 -17.75142 -17.55918 -17.36110 -16.85607 -16.34931 -16.29161 -15.93579 -15.10583 -14.90133 -14.80098 -14.56685 -14.32327 -14.12402 -13.80302 -13.69108 -13.52333 -13.37872 -13.09602 -12.93589 -12.85102 -12.30168 -12.22207 -12.14566 -11.73984 -11.70619 -11.64660 -11.31470 -11.19353 -10.82990 -10.47851 -9.09082 -8.50845 -8.44798 -6.53324 0.20293 0.70235 1.21589 1.29986 1.39142 1.39761 1.49534 1.94308 2.19039 2.29135 2.87783 3.00577 3.72915 3.82473 3.85625 4.00483 4.12890 4.25863 4.29211 4.33916 4.36157 4.43596 4.47051 4.57018 4.60069 4.65572 4.72724 4.76070 4.84000 4.88048 4.97870 5.21035 5.23196 5.35449 5.56243 5.68719 5.72339 5.82267 5.85097 6.18310 6.28517 6.44155 6.50704 6.98662 7.13594 8.71186 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.022940 B = 0.003958 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.266995 B = 7073.125372 C = 7502.951592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.193 3.807 3 H 0.024 0.976 4 C -0.540 4.540 5 H 0.047 0.953 6 C 0.032 3.968 7 N -0.930 5.930 8 Si 0.940 3.060 9 H -0.248 1.248 10 H -0.282 1.282 11 H -0.263 1.263 12 O -0.356 6.356 13 C 0.447 3.553 14 O -0.545 6.545 15 C -0.026 4.026 16 C -0.194 4.194 17 C 0.077 3.923 18 N -0.488 5.488 19 C 0.073 3.927 20 C 0.075 3.925 21 C -0.131 4.131 22 C -0.107 4.107 23 C -0.152 4.152 24 C -0.099 4.099 25 C -0.121 4.121 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.275 0.725 30 H 0.143 0.857 31 H 0.117 0.883 32 H 0.201 0.799 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.137 0.863 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.358 6.543 -25.692 26.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.138 3.862 3 H 0.041 0.959 4 C -0.577 4.577 5 H 0.066 0.934 6 C -0.168 4.168 7 N -0.568 5.568 8 Si 0.765 3.235 9 H -0.173 1.173 10 H -0.209 1.209 11 H -0.188 1.188 12 O -0.273 6.273 13 C 0.292 3.708 14 O -0.435 6.435 15 C -0.063 4.063 16 C -0.201 4.201 17 C -0.049 4.049 18 N -0.171 5.171 19 C -0.067 4.067 20 C -0.031 4.031 21 C -0.151 4.151 22 C -0.126 4.126 23 C -0.171 4.171 24 C -0.118 4.118 25 C -0.126 4.126 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.161 0.839 31 H 0.135 0.865 32 H 0.218 0.782 33 H 0.091 0.909 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.163 0.837 37 H 0.171 0.829 38 H 0.155 0.845 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.073 7.013 -25.736 26.674 hybrid contribution -0.249 0.518 1.005 1.157 sum -0.176 7.531 -24.731 25.853 Atomic orbital electron populations 1.22378 0.96187 1.02685 1.00577 1.20561 0.92125 0.92769 0.80729 0.95852 1.20985 1.33271 1.13964 0.89505 0.93421 1.25541 0.96895 0.99741 0.94649 1.69955 1.46233 1.41891 0.98749 0.85986 0.80082 0.79623 0.77762 1.17308 1.20900 1.18791 1.86509 1.76480 1.43280 1.21010 1.24692 0.73817 0.85945 0.86364 1.90574 1.49566 1.18385 1.84991 1.19624 1.04973 0.96633 0.85089 1.19732 0.95815 1.03703 1.00890 1.22045 0.99246 0.91562 0.92076 1.44015 1.12877 1.31789 1.28375 1.22234 0.97786 1.00073 0.86578 1.18548 0.87647 0.99631 0.97275 1.20342 0.93427 0.98704 1.02673 1.21157 0.96388 0.99576 0.95451 1.20914 1.00312 0.97224 0.98682 1.20474 0.92891 0.99302 0.99146 1.19375 0.95696 0.99517 0.97985 0.90879 0.92817 0.92475 0.91522 0.83902 0.86517 0.78247 0.90930 0.87462 0.88741 0.83747 0.82853 0.84494 0.87234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.28 9.03 71.98 0.65 -6.63 16 2 C 0.19 10.08 2.15 29.85 0.06 10.14 16 3 H 0.02 1.32 6.21 -2.38 -0.01 1.31 16 4 C -0.54 -32.47 9.48 25.60 0.24 -32.23 16 5 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 6 C 0.03 1.86 5.45 84.65 0.46 2.32 16 7 N -0.93 -57.75 13.96 21.45 0.30 -57.45 16 8 Si 0.94 45.33 24.37 68.60 1.67 47.00 16 9 H -0.25 -10.92 6.87 99.48 0.68 -10.24 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.26 -12.65 6.53 99.48 0.65 -12.00 16 12 O -0.36 -16.76 9.86 -51.40 -0.51 -17.27 16 13 C 0.45 18.19 7.92 71.23 0.56 18.75 16 14 O -0.54 -25.54 15.25 21.97 0.34 -25.21 16 15 C -0.03 -0.73 6.34 29.10 0.18 -0.55 16 16 C -0.19 -5.60 4.81 -18.63 -0.09 -5.69 16 17 C 0.08 1.76 11.21 83.00 0.93 2.69 16 18 N -0.49 -10.44 3.18 -539.25 -1.71 -12.15 16 19 C 0.07 0.81 11.03 127.77 1.41 2.22 16 20 C 0.07 1.97 6.81 39.03 0.27 2.23 16 21 C -0.13 -2.82 9.97 22.37 0.22 -2.60 16 22 C -0.11 -2.23 10.01 22.30 0.22 -2.01 16 23 C -0.15 -3.79 9.97 22.03 0.22 -3.57 16 24 C -0.10 -3.03 10.05 22.23 0.22 -2.80 16 25 C -0.12 -3.77 6.35 -20.20 -0.13 -3.90 16 26 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 27 H 0.05 2.42 3.27 -2.39 -0.01 2.41 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.28 15.76 8.31 -92.71 -0.77 14.98 16 30 H 0.14 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.20 2.98 8.06 -2.91 -0.02 2.96 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 34 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.09 0.75 8.10 -2.38 -0.02 0.73 16 36 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 38 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 39 H 0.11 3.37 8.06 -2.92 -0.02 3.35 16 Total: -1.00 -79.29 330.80 6.50 -72.79 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.97 Total: 13.92 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 5.44 Total: -21.62 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -1.41 Total: -69.60 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -0.17 Total: -42.48 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.67 Total: 47.00 kcal Total: -79.29 6.50 -72.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341788215.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.371 kcal (2) G-P(sol) polarization free energy of solvation -79.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds