Wall clock time and date at job start Tue Mar 31 2020 06:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47050 * 36.44407 * 3 2 1 5 5 C 1.42902 * 114.00363 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47252 * 180.02562 * 5 4 3 7 7 N 1.46491 * 109.47608 * 64.99620 * 6 5 4 8 8 C 1.46496 * 120.00273 * 269.99959 * 7 6 5 9 9 C 1.34777 * 120.00094 * 89.99816 * 7 6 5 10 10 O 1.21551 * 120.00319 * 354.40356 * 9 7 6 11 11 C 1.47884 * 120.00268 * 174.39794 * 9 7 6 12 12 C 1.39922 * 120.02539 * 147.11814 * 11 9 7 13 13 C 1.38328 * 120.35569 * 180.02562 * 12 11 9 14 14 C 1.37749 * 120.41678 * 359.97438 * 13 12 11 15 15 C 1.40745 * 120.03840 * 0.02562 * 14 13 12 16 16 C 1.41443 * 120.18048 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99741 * 150.24553 * 16 15 14 18 18 C 1.39934 * 119.99851 * 330.24928 * 16 15 14 19 19 N 1.30831 * 120.00199 * 344.44890 * 18 16 15 20 20 Si 1.86799 * 119.99981 * 164.44586 * 18 16 15 21 21 H 1.48503 * 109.46981 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47190 * 119.99727 * 20 18 16 23 23 H 1.48498 * 109.47097 * 240.00192 * 20 18 16 24 24 C 1.38997 * 120.02348 * 327.14466 * 11 9 7 25 25 H 4.38439 * 5.44287 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.47270 * 276.44545 * 3 2 1 27 27 H 1.08997 * 109.46961 * 156.44028 * 3 2 1 28 28 H 1.08995 * 109.47298 * 59.99189 * 5 4 3 29 29 H 1.09002 * 109.46483 * 299.99628 * 5 4 3 30 30 H 1.08996 * 109.47085 * 304.99375 * 6 5 4 31 31 H 1.09008 * 109.46952 * 185.00078 * 6 5 4 32 32 H 1.08994 * 109.47420 * 269.10067 * 8 7 6 33 33 H 1.09002 * 109.47217 * 29.09477 * 8 7 6 34 34 H 1.08998 * 109.47373 * 149.09649 * 8 7 6 35 35 H 1.07998 * 119.82038 * 359.97438 * 12 11 9 36 36 H 1.08009 * 119.79244 * 180.02562 * 13 12 11 37 37 H 1.08007 * 119.98018 * 180.02562 * 14 13 12 38 38 H 0.96991 * 120.00304 * 180.02562 * 19 18 16 39 39 H 1.07995 * 120.20236 * 359.69758 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.0829 -0.8003 5 6 4.5474 -1.1735 -0.8670 6 6 4.9423 -2.3621 -1.7457 7 7 4.5047 -2.1185 -3.1223 8 6 3.1750 -2.5540 -3.5561 9 6 5.3254 -1.4936 -3.9897 10 8 6.3863 -1.0419 -3.6051 11 6 4.9353 -1.3576 -5.4097 12 6 5.3278 -0.2296 -6.1387 13 6 4.9663 -0.0951 -7.4671 14 6 4.2165 -1.0697 -8.0879 15 6 3.8125 -2.2114 -7.3708 16 6 3.0430 -3.2143 -8.0055 17 1 3.1258 -4.2423 -7.6850 18 6 2.1744 -2.8744 -9.0487 19 7 1.8393 -1.6243 -9.2399 20 14 1.4934 -4.2056 -10.1683 21 1 2.0213 -5.5272 -9.7438 22 1 0.0110 -4.2145 -10.0820 23 1 1.9062 -3.9337 -11.5686 24 6 4.1780 -2.3500 -6.0211 25 1 -1.0498 -0.0003 0.0000 26 1 3.0094 -0.1145 1.0212 27 1 3.0089 0.9428 -0.4108 28 1 4.9499 -1.3131 0.1363 29 1 4.9501 -0.2557 -1.2955 30 1 4.4666 -3.2671 -1.3679 31 1 6.0253 -2.4852 -1.7250 32 1 3.2379 -3.5632 -3.9629 33 1 2.4947 -2.5474 -2.7045 34 1 2.8028 -1.8754 -4.3236 35 1 5.9155 0.5406 -5.6613 36 1 5.2746 0.7792 -8.0213 37 1 3.9386 -0.9577 -9.1256 38 1 1.2369 -1.3887 -9.9627 39 1 3.8767 -3.2244 -5.4635 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348350127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:39 Heat of formation + Delta-G solvation = 2.314772 kcal Electronic energy + Delta-G solvation = -21963.370128 eV Core-core repulsion = 18644.937500 eV Total energy + Delta-G solvation = -3318.432628 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.65634 -38.12256 -37.02508 -35.15746 -33.65924 -33.33586 -30.92781 -29.91171 -28.94607 -27.01025 -26.05628 -25.25691 -23.51312 -21.50383 -20.76051 -19.10781 -18.57234 -17.37915 -16.70804 -16.42964 -15.73023 -15.57430 -15.49764 -15.02594 -14.77589 -14.45232 -13.74928 -13.24763 -13.08839 -12.72727 -12.68871 -12.39698 -12.25687 -12.09941 -11.75110 -11.66310 -11.33565 -11.21394 -10.94939 -10.68545 -10.66564 -10.60915 -10.49594 -10.20411 -9.67523 -9.51044 -9.24292 -9.03768 -8.26784 -7.58378 -7.46953 -6.79365 -4.43387 2.25798 2.39157 2.67179 2.74025 3.06392 3.11037 3.12429 3.43192 3.69322 3.83691 3.92250 4.41730 4.60548 4.98601 5.08538 5.15843 5.23111 5.29462 5.43712 5.55935 5.70406 5.75789 5.78704 5.85386 6.00601 6.22551 6.39153 6.41695 6.78195 6.87382 6.91447 7.00233 7.05393 7.18189 7.37307 7.43023 7.64290 7.79535 7.92227 7.97087 8.10594 8.51449 8.76450 8.80828 8.84966 10.17937 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.004192 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.745566 B = 6677.350370 C = 7534.646306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.191 4.191 3 C 0.172 3.828 4 O -0.376 6.376 5 C 0.046 3.954 6 C 0.122 3.878 7 N -0.611 5.611 8 C 0.084 3.916 9 C 0.567 3.433 10 O -0.559 6.559 11 C -0.117 4.117 12 C -0.175 4.175 13 C -0.116 4.116 14 C -0.133 4.133 15 C 0.102 3.898 16 C -0.468 4.468 17 H 0.079 0.921 18 C 0.077 3.923 19 N -0.801 5.801 20 Si 0.907 3.093 21 H -0.261 1.261 22 H -0.275 1.275 23 H -0.273 1.273 24 C -0.188 4.188 25 H 0.221 0.779 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.280 0.720 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.457 0.222 13.000 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.191 4.191 3 C 0.096 3.904 4 O -0.296 6.296 5 C -0.031 4.031 6 C -0.001 4.001 7 N -0.344 5.344 8 C -0.059 4.059 9 C 0.359 3.641 10 O -0.439 6.439 11 C -0.120 4.120 12 C -0.195 4.195 13 C -0.135 4.135 14 C -0.153 4.153 15 C 0.100 3.900 16 C -0.498 4.498 17 H 0.097 0.903 18 C -0.140 4.140 19 N -0.426 5.426 20 Si 0.731 3.269 21 H -0.184 1.184 22 H -0.200 1.200 23 H -0.198 1.198 24 C -0.208 4.208 25 H 0.238 0.762 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.174 0.460 12.965 13.026 hybrid contribution -0.569 -0.280 -0.433 0.768 sum -1.743 0.180 12.532 12.654 Atomic orbital electron populations 1.24954 0.95886 0.98880 0.99760 1.22570 0.93931 1.01489 1.01076 1.19041 0.84717 0.91236 0.95364 1.87972 1.21656 1.49417 1.70574 1.23075 0.80519 1.00419 0.99128 1.21409 1.00984 0.96477 0.81280 1.47661 1.16992 1.59538 1.10192 1.22122 0.82616 1.00189 1.00974 1.19003 0.82947 0.75769 0.86387 1.90648 1.24413 1.49009 1.79843 1.19279 1.03181 0.98264 0.91271 1.20399 1.06071 0.98223 0.94851 1.20660 0.99880 0.98576 0.94351 1.21448 0.98505 0.95476 0.99871 1.17545 0.89961 0.92567 0.89932 1.19521 1.20400 0.95347 1.14561 0.90320 1.25843 0.95227 0.96094 0.96810 1.69795 1.27058 1.18446 1.27339 0.86286 0.78795 0.81770 0.80020 1.18443 1.20036 1.19782 1.21616 1.04264 0.99537 0.95390 0.76215 0.91117 0.90959 0.92415 0.92281 0.89935 0.88511 0.92633 0.91373 0.89559 0.88503 0.88669 0.86582 0.90911 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 19.25 29.55 0.57 -1.34 16 2 C -0.19 -2.35 13.73 -37.12 -0.51 -2.86 16 3 C 0.17 1.93 6.41 34.37 0.22 2.15 16 4 O -0.38 -5.10 9.14 -35.23 -0.32 -5.42 16 5 C 0.05 0.57 6.28 37.16 0.23 0.80 16 6 C 0.12 1.66 5.77 -4.05 -0.02 1.63 16 7 N -0.61 -10.57 2.84 -182.69 -0.52 -11.09 16 8 C 0.08 1.37 8.63 59.84 0.52 1.89 16 9 C 0.57 11.92 7.38 -12.31 -0.09 11.83 16 10 O -0.56 -12.72 16.41 5.32 0.09 -12.63 16 11 C -0.12 -2.68 5.24 -105.04 -0.55 -3.23 16 12 C -0.18 -4.07 9.61 -38.92 -0.37 -4.44 16 13 C -0.12 -2.69 10.01 -39.73 -0.40 -3.09 16 14 C -0.13 -3.35 8.65 -38.81 -0.34 -3.69 16 15 C 0.10 2.60 5.51 -106.87 -0.59 2.01 16 16 C -0.47 -11.86 9.04 -37.73 -0.34 -12.20 16 17 H 0.08 1.92 7.89 -52.49 -0.41 1.50 16 18 C 0.08 1.87 5.14 -17.34 -0.09 1.78 16 19 N -0.80 -20.09 11.18 55.55 0.62 -19.47 16 20 Si 0.91 18.15 29.59 -169.99 -5.03 13.12 16 21 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 C -0.19 -4.38 7.42 -38.44 -0.29 -4.67 16 25 H 0.22 1.52 7.80 -54.10 -0.42 1.10 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 31 H 0.10 1.31 7.51 -51.92 -0.39 0.92 16 32 H 0.06 0.87 6.64 -51.93 -0.34 0.53 16 33 H 0.07 1.02 7.13 -51.93 -0.37 0.65 16 34 H 0.09 1.63 6.10 -51.93 -0.32 1.31 16 35 H 0.10 2.15 7.96 -52.49 -0.42 1.74 16 36 H 0.10 1.95 8.06 -52.48 -0.42 1.53 16 37 H 0.12 2.99 6.47 -52.48 -0.34 2.65 16 38 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 39 H 0.11 2.35 5.11 -52.49 -0.27 2.08 16 LS Contribution 338.12 15.07 5.10 5.10 Total: -1.00 -29.89 338.12 -7.06 -36.95 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.95 Total: 6.85 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -2.05 Total: -13.41 kcal Atomic # 7 Polarization: -30.66 SS G_CDS: 0.10 Total: -30.55 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.23 Total: -18.05 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.89 -7.06 -36.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348350127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.264 kcal (2) G-P(sol) polarization free energy of solvation -29.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds