Wall clock time and date at job start Tue Mar 31 2020 06:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47050 * 36.44407 * 3 2 1 5 5 C 1.42902 * 114.00363 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47252 * 180.02562 * 5 4 3 7 7 N 1.46491 * 109.47608 * 64.99620 * 6 5 4 8 8 C 1.46496 * 120.00273 * 269.99959 * 7 6 5 9 9 C 1.34777 * 120.00094 * 89.99816 * 7 6 5 10 10 O 1.21551 * 120.00319 * 354.40356 * 9 7 6 11 11 C 1.47884 * 120.00268 * 174.39794 * 9 7 6 12 12 C 1.39922 * 120.02539 * 147.11814 * 11 9 7 13 13 C 1.38328 * 120.35569 * 180.02562 * 12 11 9 14 14 C 1.37749 * 120.41678 * 359.97438 * 13 12 11 15 15 C 1.40745 * 120.03840 * 0.02562 * 14 13 12 16 16 C 1.41443 * 120.18048 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99741 * 150.24553 * 16 15 14 18 18 C 1.39934 * 119.99851 * 330.24928 * 16 15 14 19 19 N 1.30831 * 120.00199 * 344.44890 * 18 16 15 20 20 Si 1.86799 * 119.99981 * 164.44586 * 18 16 15 21 21 H 1.48503 * 109.46981 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47190 * 119.99727 * 20 18 16 23 23 H 1.48498 * 109.47097 * 240.00192 * 20 18 16 24 24 C 1.38997 * 120.02348 * 327.14466 * 11 9 7 25 25 H 4.38439 * 5.44287 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.47270 * 276.44545 * 3 2 1 27 27 H 1.08997 * 109.46961 * 156.44028 * 3 2 1 28 28 H 1.08995 * 109.47298 * 59.99189 * 5 4 3 29 29 H 1.09002 * 109.46483 * 299.99628 * 5 4 3 30 30 H 1.08996 * 109.47085 * 304.99375 * 6 5 4 31 31 H 1.09008 * 109.46952 * 185.00078 * 6 5 4 32 32 H 1.08994 * 109.47420 * 269.10067 * 8 7 6 33 33 H 1.09002 * 109.47217 * 29.09477 * 8 7 6 34 34 H 1.08998 * 109.47373 * 149.09649 * 8 7 6 35 35 H 1.07998 * 119.82038 * 359.97438 * 12 11 9 36 36 H 1.08009 * 119.79244 * 180.02562 * 13 12 11 37 37 H 1.08007 * 119.98018 * 180.02562 * 14 13 12 38 38 H 0.96991 * 120.00304 * 180.02562 * 19 18 16 39 39 H 1.07995 * 120.20236 * 359.69758 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.0829 -0.8003 5 6 4.5474 -1.1735 -0.8670 6 6 4.9423 -2.3621 -1.7457 7 7 4.5047 -2.1185 -3.1223 8 6 3.1750 -2.5540 -3.5561 9 6 5.3254 -1.4936 -3.9897 10 8 6.3863 -1.0419 -3.6051 11 6 4.9353 -1.3576 -5.4097 12 6 5.3278 -0.2296 -6.1387 13 6 4.9663 -0.0951 -7.4671 14 6 4.2165 -1.0697 -8.0879 15 6 3.8125 -2.2114 -7.3708 16 6 3.0430 -3.2143 -8.0055 17 1 3.1258 -4.2423 -7.6850 18 6 2.1744 -2.8744 -9.0487 19 7 1.8393 -1.6243 -9.2399 20 14 1.4934 -4.2056 -10.1683 21 1 2.0213 -5.5272 -9.7438 22 1 0.0110 -4.2145 -10.0820 23 1 1.9062 -3.9337 -11.5686 24 6 4.1780 -2.3500 -6.0211 25 1 -1.0498 -0.0003 0.0000 26 1 3.0094 -0.1145 1.0212 27 1 3.0089 0.9428 -0.4108 28 1 4.9499 -1.3131 0.1363 29 1 4.9501 -0.2557 -1.2955 30 1 4.4666 -3.2671 -1.3679 31 1 6.0253 -2.4852 -1.7250 32 1 3.2379 -3.5632 -3.9629 33 1 2.4947 -2.5474 -2.7045 34 1 2.8028 -1.8754 -4.3236 35 1 5.9155 0.5406 -5.6613 36 1 5.2746 0.7792 -8.0213 37 1 3.9386 -0.9577 -9.1256 38 1 1.2369 -1.3887 -9.9627 39 1 3.8767 -3.2244 -5.4635 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348350127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:38 Heat of formation + Delta-G solvation = -13.992157 kcal Electronic energy + Delta-G solvation = -21964.077249 eV Core-core repulsion = 18644.937500 eV Total energy + Delta-G solvation = -3319.139749 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21198 -39.26152 -38.70732 -36.59620 -35.48880 -34.24505 -32.36108 -31.78067 -30.39205 -28.06021 -27.39372 -27.09709 -24.84373 -23.07959 -22.55542 -20.72257 -19.39452 -19.00584 -17.97269 -17.61749 -17.23883 -17.10167 -16.76782 -16.56337 -16.32833 -15.63787 -15.28416 -14.98059 -14.55111 -14.32870 -13.99972 -13.68727 -13.58798 -13.42483 -13.29350 -13.14793 -12.84527 -12.75063 -12.50202 -12.29116 -12.22588 -11.94913 -11.55833 -11.51642 -11.33635 -11.05874 -10.77732 -10.51874 -9.69803 -9.42557 -9.34513 -8.61879 -6.35908 0.45986 0.94039 1.42823 1.48432 1.51601 1.57010 1.82320 1.92843 2.12350 2.24787 2.76992 2.94106 3.59944 3.65974 3.74685 4.07953 4.14678 4.29421 4.30933 4.38002 4.43258 4.48104 4.56773 4.64014 4.69068 4.83631 4.96755 5.01260 5.02423 5.05895 5.16633 5.32276 5.46167 5.63190 5.81469 5.97196 6.03821 6.11172 6.21586 6.36574 6.60040 6.61801 6.92341 6.94261 7.16928 8.37699 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.004192 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.745566 B = 6677.350370 C = 7534.646306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.237 4.237 3 C 0.168 3.832 4 O -0.397 6.397 5 C 0.051 3.949 6 C 0.115 3.885 7 N -0.602 5.602 8 C 0.089 3.911 9 C 0.564 3.436 10 O -0.582 6.582 11 C -0.124 4.124 12 C -0.188 4.188 13 C -0.114 4.114 14 C -0.157 4.157 15 C 0.077 3.923 16 C -0.496 4.496 17 H 0.081 0.919 18 C 0.039 3.961 19 N -0.831 5.831 20 Si 0.979 3.021 21 H -0.257 1.257 22 H -0.267 1.267 23 H -0.268 1.268 24 C -0.186 4.186 25 H 0.252 0.748 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.037 0.963 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.288 0.712 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.295 -0.828 14.222 14.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.237 4.237 3 C 0.093 3.907 4 O -0.317 6.317 5 C -0.026 4.026 6 C -0.007 4.007 7 N -0.333 5.333 8 C -0.053 4.053 9 C 0.355 3.645 10 O -0.464 6.464 11 C -0.127 4.127 12 C -0.208 4.208 13 C -0.133 4.133 14 C -0.177 4.177 15 C 0.074 3.926 16 C -0.526 4.526 17 H 0.099 0.901 18 C -0.176 4.176 19 N -0.457 5.457 20 Si 0.801 3.199 21 H -0.180 1.180 22 H -0.192 1.192 23 H -0.193 1.193 24 C -0.206 4.206 25 H 0.268 0.732 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.056 0.944 30 H 0.129 0.871 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.136 0.864 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.023 -0.593 14.224 14.379 hybrid contribution -0.352 0.093 -0.711 0.798 sum -2.374 -0.500 13.513 13.729 Atomic orbital electron populations 1.25838 0.96855 0.97292 0.98299 1.23140 0.94972 1.03015 1.02545 1.19217 0.84517 0.90562 0.96445 1.87913 1.22051 1.50301 1.71455 1.23011 0.80314 0.98691 1.00598 1.21744 1.01452 0.98357 0.79172 1.47698 1.16498 1.57836 1.11297 1.22064 0.82426 0.99776 1.01055 1.18738 0.83181 0.76490 0.86124 1.90629 1.25388 1.50311 1.80030 1.19599 1.02419 0.97905 0.92761 1.20611 1.06380 0.98756 0.95029 1.20880 0.98979 0.98836 0.94569 1.21423 1.00159 0.96593 0.99537 1.17894 0.90591 0.93089 0.90985 1.19776 1.21356 0.95459 1.16027 0.90084 1.26659 0.95060 0.98250 0.97599 1.69850 1.27573 1.20295 1.28003 0.85194 0.78223 0.78764 0.77768 1.18042 1.19228 1.19306 1.21759 1.03907 1.00091 0.94811 0.73198 0.88469 0.91027 0.88697 0.94435 0.87140 0.88383 0.91619 0.89410 0.92323 0.87751 0.86371 0.87911 0.90187 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 19.25 74.32 1.43 -1.83 16 2 C -0.24 -5.53 13.73 31.13 0.43 -5.10 16 3 C 0.17 3.53 6.41 70.18 0.45 3.98 16 4 O -0.40 -10.05 9.14 -148.98 -1.36 -11.41 16 5 C 0.05 1.16 6.28 71.98 0.45 1.61 16 6 C 0.11 2.87 5.77 86.38 0.50 3.37 16 7 N -0.60 -20.14 2.84 -850.19 -2.41 -22.55 16 8 C 0.09 2.83 8.63 127.77 1.10 3.93 16 9 C 0.56 23.56 7.38 86.80 0.64 24.20 16 10 O -0.58 -26.32 16.41 -3.88 -0.06 -26.39 16 11 C -0.12 -5.73 5.24 -20.13 -0.11 -5.83 16 12 C -0.19 -8.80 9.61 22.70 0.22 -8.58 16 13 C -0.11 -5.38 10.01 22.18 0.22 -5.16 16 14 C -0.16 -8.13 8.65 22.77 0.20 -7.93 16 15 C 0.08 3.98 5.51 -21.32 -0.12 3.86 16 16 C -0.50 -25.46 9.04 23.47 0.21 -25.25 16 17 H 0.08 3.97 7.89 -2.91 -0.02 3.95 16 18 C 0.04 1.88 5.14 85.25 0.44 2.32 16 19 N -0.83 -42.21 11.18 21.82 0.24 -41.97 16 20 Si 0.98 36.90 29.59 68.60 2.03 38.93 16 21 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 22 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 23 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 24 C -0.19 -8.76 7.42 23.01 0.17 -8.59 16 25 H 0.25 2.78 7.80 -4.43 -0.03 2.74 16 26 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.11 2.18 8.07 -2.39 -0.02 2.16 16 31 H 0.10 2.47 7.51 -2.38 -0.02 2.45 16 32 H 0.07 1.96 6.64 -2.39 -0.02 1.95 16 33 H 0.09 2.46 7.13 -2.39 -0.02 2.44 16 34 H 0.06 2.21 6.10 -2.39 -0.01 2.20 16 35 H 0.10 4.67 7.96 -2.91 -0.02 4.64 16 36 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 37 H 0.10 5.49 6.47 -2.91 -0.02 5.47 16 38 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 39 H 0.13 5.34 5.11 -2.91 -0.01 5.32 16 Total: -1.00 -65.00 338.12 5.73 -59.27 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 1.05 Total: 29.12 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 6.24 Total: -25.00 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -2.17 Total: -64.52 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -1.43 Total: -37.80 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Total: -65.00 5.73 -59.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348350127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.282 kcal (2) G-P(sol) polarization free energy of solvation -65.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds