Wall clock time and date at job start Tue Mar 31 2020 06:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47160 * 2 1 4 4 C 1.53006 * 109.46626 * 240.00369 * 2 1 3 5 5 C 1.47207 * 109.46903 * 174.99573 * 4 2 1 6 6 C 3.47004 * 155.07868 * 248.55923 * 2 1 3 7 7 C 4.80942 * 162.00250 * 253.04318 * 2 1 3 8 8 C 1.39958 * 120.55932 * 65.78484 * 7 6 5 9 9 C 1.38367 * 118.29524 * 179.77881 * 8 7 6 10 10 C 1.38335 * 119.30411 * 0.50069 * 9 8 7 11 11 N 1.31897 * 121.07112 * 359.73941 * 10 9 8 12 12 C 1.31712 * 121.87790 * 0.02562 * 11 10 9 13 13 O 1.45194 * 109.47291 * 120.00280 * 2 1 3 14 14 C 1.34224 * 117.00084 * 269.99471 * 13 2 1 15 15 O 1.20827 * 119.99935 * 0.02562 * 14 13 2 16 16 C 1.50697 * 120.00084 * 180.02562 * 14 13 2 17 17 C 1.53007 * 109.47273 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.47273 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00395 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99934 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00153 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99901 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47330 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47238 * 119.99875 * 22 20 18 25 25 H 1.48498 * 109.47236 * 240.00385 * 22 20 18 26 26 H 1.09002 * 109.46719 * 299.99720 * 1 2 3 27 27 H 1.08993 * 109.47839 * 59.99562 * 1 2 3 28 28 H 1.09000 * 109.47160 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46794 * 294.99833 * 4 2 1 30 30 H 1.09000 * 109.47314 * 54.99967 * 4 2 1 31 31 H 1.08009 * 120.85405 * 0.02562 * 8 7 6 32 32 H 1.08002 * 120.34741 * 180.24184 * 9 8 7 33 33 H 1.08002 * 119.46281 * 179.76981 * 10 9 8 34 34 H 1.08002 * 119.71769 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.47554 * 300.00169 * 16 14 13 36 36 H 1.09001 * 109.46979 * 60.00542 * 16 14 13 37 37 H 1.09001 * 109.46772 * 300.00407 * 17 16 14 38 38 H 1.09001 * 109.46872 * 60.00235 * 17 16 14 39 39 H 0.96995 * 120.00095 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5070 -0.6173 -1.3115 6 6 4.6769 -0.5345 -1.3610 7 6 6.1041 -0.4334 -1.4214 8 6 6.8019 -0.8795 -2.5496 9 6 8.1800 -0.7551 -2.5600 10 6 8.8188 -0.2088 -1.4614 11 7 8.1353 0.1988 -0.4095 12 6 6.8227 0.1057 -0.3541 13 8 2.0140 -0.6845 1.1855 14 6 2.2173 0.0639 2.2810 15 8 1.9975 1.2516 2.2505 16 6 2.7195 -0.5772 3.5490 17 6 2.8635 0.4888 4.6371 18 6 3.3652 -0.1523 5.9052 19 1 3.5620 -1.2139 5.9324 20 6 3.5738 0.6165 7.0306 21 7 3.3346 1.9092 6.9975 22 14 4.1963 -0.1782 8.6024 23 1 4.3854 -1.6342 8.3797 24 1 5.4919 0.4363 8.9883 25 1 3.2059 0.0312 9.6888 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7515 -1.7714 -1.2057 30 1 1.6052 -0.2617 -2.1371 31 1 6.2780 -1.3062 -3.3921 32 1 8.7512 -1.0850 -3.4152 33 1 9.8947 -0.1139 -1.4652 34 1 6.2981 0.4500 0.5250 35 1 2.0107 -1.3374 3.8772 36 1 3.6886 -1.0401 3.3628 37 1 3.5721 1.2494 4.3090 38 1 1.8942 0.9514 4.8231 39 1 3.4818 2.4501 7.7890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348617607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:48 Heat of formation + Delta-G solvation = -24.804286 kcal Electronic energy + Delta-G solvation = -20969.308927 eV Core-core repulsion = 17649.700328 eV Total energy + Delta-G solvation = -3319.608598 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.25902 -40.09217 -36.84174 -34.88835 -33.58224 -33.31973 -32.26952 -31.12449 -30.61881 -27.46234 -26.09022 -23.92836 -23.70929 -22.88736 -21.17486 -19.78762 -18.41858 -17.48615 -17.08105 -16.47901 -16.35365 -15.87853 -15.67856 -14.92748 -14.49923 -14.32591 -14.12737 -13.90949 -13.70447 -13.35859 -13.14460 -12.79843 -12.45397 -12.28600 -12.08532 -12.03072 -11.44319 -11.21328 -11.06949 -10.95713 -10.63081 -10.54777 -10.28507 -10.03904 -9.96697 -9.88421 -9.58757 -9.50122 -9.14380 -8.81720 -8.36256 -5.99844 -4.04529 0.52985 0.99763 2.39542 2.76930 2.84617 3.10646 3.32515 3.39919 3.43715 3.76902 3.78906 4.31478 4.46018 4.58340 4.63731 4.70071 4.83142 4.90296 5.04722 5.10928 5.17045 5.35777 5.36397 5.45853 5.48523 5.63687 5.74839 5.78852 5.86812 5.93054 6.06295 6.13758 6.22282 6.42781 6.67691 6.96151 7.35842 7.68364 7.75020 7.75299 7.99700 8.27506 8.43363 9.02688 9.59600 11.11223 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.011047 B = 0.003881 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.989990 B = 7213.503205 C = 9344.285469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.083 3.917 3 H 0.087 0.913 4 C -0.004 4.004 5 C -0.132 4.132 6 C -0.151 4.151 7 C -0.027 4.027 8 C -0.058 4.058 9 C -0.174 4.174 10 C 0.101 3.899 11 N -0.478 5.478 12 C 0.128 3.872 13 O -0.359 6.359 14 C 0.457 3.543 15 O -0.505 6.505 16 C -0.104 4.104 17 C 0.034 3.966 18 C -0.528 4.528 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.889 5.889 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.284 1.284 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.026 0.974 38 H 0.025 0.975 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 -7.113 -22.591 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.028 3.972 3 H 0.105 0.895 4 C -0.040 4.040 5 C -0.132 4.132 6 C -0.152 4.152 7 C -0.029 4.029 8 C -0.084 4.084 9 C -0.194 4.194 10 C -0.056 4.056 11 N -0.186 5.186 12 C -0.030 4.030 13 O -0.277 6.277 14 C 0.300 3.700 15 O -0.391 6.391 16 C -0.141 4.141 17 C -0.004 4.004 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.528 5.528 22 Si 0.722 3.278 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.210 1.210 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.638 -6.219 -21.807 22.829 hybrid contribution -0.153 -0.588 0.069 0.612 sum 2.485 -6.807 -21.738 22.914 Atomic orbital electron populations 1.22183 0.93743 1.03175 1.03450 1.22545 0.94436 0.97538 0.82664 0.89464 1.18945 0.84413 1.03273 0.97366 1.22078 0.93325 0.98888 0.98888 1.18737 0.90720 1.02871 1.02829 1.16883 0.87769 1.01998 0.96268 1.21651 0.94171 0.95716 0.96868 1.22076 0.94789 1.01923 1.00570 1.22939 1.00667 0.93299 0.88673 1.67762 1.08354 1.15977 1.26476 1.23125 0.89475 0.93247 0.97108 1.86642 1.77566 1.43025 1.20510 1.24759 0.73745 0.86380 0.85075 1.90622 1.47700 1.16948 1.83835 1.21767 1.01688 1.01984 0.88710 1.19014 0.98522 0.92449 0.90369 1.21192 1.44931 0.94745 0.95703 0.92286 1.25017 0.95480 0.94810 0.98997 1.70000 1.48394 1.05017 1.29355 0.86498 0.78513 0.79525 0.83233 1.19645 1.20933 1.20983 0.91263 0.90829 0.91353 0.87934 0.87318 0.84544 0.84318 0.82422 0.81917 0.89003 0.89075 0.95601 0.95622 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 9.55 37.16 0.35 -1.42 16 2 C 0.08 1.08 2.53 -26.73 -0.07 1.01 16 3 H 0.09 1.29 7.15 -51.93 -0.37 0.91 16 4 C 0.00 -0.04 5.43 -29.51 -0.16 -0.20 16 5 C -0.13 -1.67 13.10 -37.12 -0.49 -2.16 16 6 C -0.15 -2.03 13.28 -38.84 -0.52 -2.54 16 7 C -0.03 -0.34 5.74 -106.86 -0.61 -0.95 16 8 C -0.06 -0.56 9.90 -38.89 -0.39 -0.95 16 9 C -0.17 -1.43 10.10 -39.50 -0.40 -1.83 16 10 C 0.10 0.99 11.17 -17.49 -0.20 0.80 16 11 N -0.48 -6.38 10.35 -12.92 -0.13 -6.51 16 12 C 0.13 1.74 10.92 -17.13 -0.19 1.56 16 13 O -0.36 -5.90 9.63 -39.24 -0.38 -6.28 16 14 C 0.46 9.09 7.93 36.00 0.29 9.38 16 15 O -0.50 -11.49 15.20 -18.75 -0.29 -11.78 16 16 C -0.10 -2.17 5.75 -27.88 -0.16 -2.33 16 17 C 0.03 0.90 4.26 -27.88 -0.12 0.78 16 18 C -0.53 -14.92 9.11 -34.44 -0.31 -15.24 16 19 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 22 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.16 2.26 8.06 -52.49 -0.42 1.84 16 35 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 36 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 37 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 38 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -34.68 352.18 -8.24 -42.92 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.40 Total: -1.35 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -3.06 Total: -12.49 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.60 Total: -33.01 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.66 Total: -18.05 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.68 -8.24 -42.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348617607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.112 kcal (2) G-P(sol) polarization free energy of solvation -34.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds