Wall clock time and date at job start Tue Mar 31 2020 06:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47160 * 2 1 4 4 C 1.53006 * 109.46626 * 240.00369 * 2 1 3 5 5 C 1.47207 * 109.46903 * 174.99573 * 4 2 1 6 6 C 3.47004 * 155.07868 * 248.55923 * 2 1 3 7 7 C 4.80942 * 162.00250 * 253.04318 * 2 1 3 8 8 C 1.39958 * 120.55932 * 65.78484 * 7 6 5 9 9 C 1.38367 * 118.29524 * 179.77881 * 8 7 6 10 10 C 1.38335 * 119.30411 * 0.50069 * 9 8 7 11 11 N 1.31897 * 121.07112 * 359.73941 * 10 9 8 12 12 C 1.31712 * 121.87790 * 0.02562 * 11 10 9 13 13 O 1.45194 * 109.47291 * 120.00280 * 2 1 3 14 14 C 1.34224 * 117.00084 * 269.99471 * 13 2 1 15 15 O 1.20827 * 119.99935 * 0.02562 * 14 13 2 16 16 C 1.50697 * 120.00084 * 180.02562 * 14 13 2 17 17 C 1.53007 * 109.47273 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.47273 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00395 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99934 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00153 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99901 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47330 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47238 * 119.99875 * 22 20 18 25 25 H 1.48498 * 109.47236 * 240.00385 * 22 20 18 26 26 H 1.09002 * 109.46719 * 299.99720 * 1 2 3 27 27 H 1.08993 * 109.47839 * 59.99562 * 1 2 3 28 28 H 1.09000 * 109.47160 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46794 * 294.99833 * 4 2 1 30 30 H 1.09000 * 109.47314 * 54.99967 * 4 2 1 31 31 H 1.08009 * 120.85405 * 0.02562 * 8 7 6 32 32 H 1.08002 * 120.34741 * 180.24184 * 9 8 7 33 33 H 1.08002 * 119.46281 * 179.76981 * 10 9 8 34 34 H 1.08002 * 119.71769 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.47554 * 300.00169 * 16 14 13 36 36 H 1.09001 * 109.46979 * 60.00542 * 16 14 13 37 37 H 1.09001 * 109.46772 * 300.00407 * 17 16 14 38 38 H 1.09001 * 109.46872 * 60.00235 * 17 16 14 39 39 H 0.96995 * 120.00095 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5070 -0.6173 -1.3115 6 6 4.6769 -0.5345 -1.3610 7 6 6.1041 -0.4334 -1.4214 8 6 6.8019 -0.8795 -2.5496 9 6 8.1800 -0.7551 -2.5600 10 6 8.8188 -0.2088 -1.4614 11 7 8.1353 0.1988 -0.4095 12 6 6.8227 0.1057 -0.3541 13 8 2.0140 -0.6845 1.1855 14 6 2.2173 0.0639 2.2810 15 8 1.9975 1.2516 2.2505 16 6 2.7195 -0.5772 3.5490 17 6 2.8635 0.4888 4.6371 18 6 3.3652 -0.1523 5.9052 19 1 3.5620 -1.2139 5.9324 20 6 3.5738 0.6165 7.0306 21 7 3.3346 1.9092 6.9975 22 14 4.1963 -0.1782 8.6024 23 1 4.3854 -1.6342 8.3797 24 1 5.4919 0.4363 8.9883 25 1 3.2059 0.0312 9.6888 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7515 -1.7714 -1.2057 30 1 1.6052 -0.2617 -2.1371 31 1 6.2780 -1.3062 -3.3921 32 1 8.7512 -1.0850 -3.4152 33 1 9.8947 -0.1139 -1.4652 34 1 6.2981 0.4500 0.5250 35 1 2.0107 -1.3374 3.8772 36 1 3.6886 -1.0401 3.3628 37 1 3.5721 1.2494 4.3090 38 1 1.8942 0.9514 4.8231 39 1 3.4818 2.4501 7.7890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348617607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:47 Heat of formation + Delta-G solvation = -44.691244 kcal Electronic energy + Delta-G solvation = -20970.171290 eV Core-core repulsion = 17649.700328 eV Total energy + Delta-G solvation = -3320.470961 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.59578 -41.08464 -38.22588 -35.93829 -35.66974 -34.34059 -33.20561 -32.96572 -31.58445 -28.30462 -28.11026 -24.91939 -24.55122 -24.48116 -22.57064 -21.38023 -19.28671 -19.18084 -18.23882 -17.89110 -17.39889 -17.29829 -17.03037 -16.50015 -16.07932 -15.26980 -15.16908 -14.93187 -14.85254 -14.51194 -14.24740 -14.12646 -13.86407 -13.68772 -13.29057 -13.16644 -12.95753 -12.87458 -12.49733 -12.37628 -12.08001 -12.05054 -11.81033 -11.67705 -11.47935 -11.32135 -11.18149 -10.73570 -10.60578 -10.43563 -9.69816 -8.21838 -6.35816 -0.31588 0.19893 1.23042 1.40522 1.41994 1.43048 1.56332 1.72744 1.89473 2.41787 2.90148 2.93566 3.11899 3.47955 3.76157 3.83396 3.86683 3.91255 3.93908 4.07960 4.19303 4.31784 4.38456 4.40629 4.64234 4.64766 4.72378 4.75288 4.80370 4.87421 4.98382 5.04265 5.12790 5.20310 5.41215 5.47158 5.51970 5.64594 5.78231 6.11208 6.41138 6.78265 6.85440 6.90365 7.34504 8.91109 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.011047 B = 0.003881 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.989990 B = 7213.503205 C = 9344.285469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.073 3.927 3 H 0.062 0.938 4 C 0.004 3.996 5 C -0.141 4.141 6 C -0.179 4.179 7 C -0.046 4.046 8 C -0.056 4.056 9 C -0.155 4.155 10 C 0.093 3.907 11 N -0.512 5.512 12 C 0.098 3.902 13 O -0.352 6.352 14 C 0.465 3.535 15 O -0.543 6.543 16 C -0.096 4.096 17 C 0.041 3.959 18 C -0.545 4.545 19 H 0.076 0.924 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.974 3.026 23 H -0.254 1.254 24 H -0.280 1.280 25 H -0.278 1.278 26 H 0.039 0.961 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.126 0.874 30 H 0.150 0.850 31 H 0.164 0.836 32 H 0.184 0.816 33 H 0.189 0.811 34 H 0.139 0.861 35 H 0.117 0.883 36 H 0.107 0.893 37 H -0.014 1.014 38 H -0.009 1.009 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.644 -9.805 -24.627 26.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.019 3.981 3 H 0.080 0.920 4 C -0.032 4.032 5 C -0.141 4.141 6 C -0.180 4.180 7 C -0.048 4.048 8 C -0.082 4.082 9 C -0.174 4.174 10 C -0.064 4.064 11 N -0.220 5.220 12 C -0.058 4.058 13 O -0.270 6.270 14 C 0.310 3.690 15 O -0.433 6.433 16 C -0.134 4.134 17 C 0.003 3.997 18 C -0.582 4.582 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.575 5.575 22 Si 0.798 3.202 23 H -0.177 1.177 24 H -0.206 1.206 25 H -0.203 1.203 26 H 0.058 0.942 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.144 0.856 30 H 0.168 0.832 31 H 0.181 0.819 32 H 0.201 0.799 33 H 0.206 0.794 34 H 0.156 0.844 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.005 0.995 38 H 0.010 0.990 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.023 -8.945 -23.868 25.668 hybrid contribution -0.240 0.266 0.549 0.656 sum 2.782 -8.680 -23.319 25.037 Atomic orbital electron populations 1.22186 0.91453 1.04593 1.03720 1.22984 0.96309 0.96617 0.82229 0.91952 1.19182 0.82595 1.04641 0.96758 1.22818 0.94334 0.98492 0.98429 1.19265 0.91564 1.03651 1.03482 1.17040 0.87719 1.02914 0.97152 1.22029 0.94960 0.94801 0.96396 1.22534 0.94347 0.99536 1.00971 1.23566 1.02057 0.92514 0.88257 1.67693 1.08266 1.17418 1.28663 1.22866 0.90134 0.95451 0.97398 1.86585 1.77155 1.42552 1.20667 1.24393 0.73048 0.85712 0.85827 1.90613 1.49503 1.18536 1.84626 1.21508 1.03478 1.00461 0.87924 1.18772 0.95434 0.93067 0.92378 1.21660 1.44636 0.95649 0.96277 0.90595 1.26103 0.95525 0.95283 1.03240 1.70163 1.49709 1.06945 1.30672 0.85263 0.77722 0.79216 0.78010 1.17744 1.20615 1.20342 0.94151 0.87427 0.89303 0.85571 0.83232 0.81870 0.79918 0.79405 0.84374 0.86521 0.87443 0.99517 0.99011 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.55 71.98 0.69 -2.45 16 2 C 0.07 1.83 2.53 30.60 0.08 1.91 16 3 H 0.06 1.89 7.15 -2.39 -0.02 1.88 16 4 C 0.00 0.06 5.43 28.79 0.16 0.22 16 5 C -0.14 -3.46 13.10 31.13 0.41 -3.06 16 6 C -0.18 -4.88 13.28 30.02 0.40 -4.48 16 7 C -0.05 -1.18 5.74 -21.31 -0.12 -1.30 16 8 C -0.06 -0.98 9.90 22.72 0.22 -0.76 16 9 C -0.15 -2.09 10.10 22.32 0.23 -1.87 16 10 C 0.09 1.69 11.17 84.71 0.95 2.64 16 11 N -0.51 -14.14 10.35 -194.79 -2.02 -16.15 16 12 C 0.10 2.89 10.92 85.02 0.93 3.82 16 13 O -0.35 -11.50 9.63 -51.36 -0.49 -11.99 16 14 C 0.47 19.16 7.93 71.23 0.56 19.72 16 15 O -0.54 -26.26 15.20 21.96 0.33 -25.93 16 16 C -0.10 -4.11 5.75 29.85 0.17 -3.93 16 17 C 0.04 2.29 4.26 29.85 0.13 2.41 16 18 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 19 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 20 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 21 N -0.94 -59.31 13.29 21.45 0.28 -59.02 16 22 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 23 H -0.25 -10.84 7.11 99.48 0.71 -10.13 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.18 0.86 8.06 -2.91 -0.02 0.83 16 33 H 0.19 2.09 8.06 -2.91 -0.02 2.06 16 34 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 35 H 0.12 4.38 8.14 -2.39 -0.02 4.36 16 36 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 37 H -0.01 -0.86 8.10 -2.39 -0.02 -0.88 16 38 H -0.01 -0.53 8.10 -2.39 -0.02 -0.55 16 39 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -81.07 352.18 6.67 -74.40 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 1.04 Total: 9.88 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 5.49 Total: -17.97 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -1.73 Total: -75.18 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -0.16 Total: -37.92 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -81.07 6.67 -74.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348617607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.712 kcal (2) G-P(sol) polarization free energy of solvation -81.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds