Wall clock time and date at job start Tue Mar 31 2020 06:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47389 * 2 1 4 4 C 1.52996 * 109.46954 * 120.00223 * 2 1 3 5 5 C 1.47199 * 109.46995 * 184.99800 * 4 2 1 6 6 C 3.46997 * 155.08326 * 111.45232 * 2 1 3 7 7 C 4.80942 * 162.00748 * 106.97056 * 2 1 3 8 8 C 1.39964 * 120.55258 * 166.45895 * 7 6 5 9 9 C 1.38375 * 118.29005 * 179.97438 * 8 7 6 10 10 C 1.38333 * 119.30133 * 0.28094 * 9 8 7 11 11 N 1.31902 * 121.07795 * 359.43794 * 10 9 8 12 12 C 1.31714 * 121.86797 * 0.55395 * 11 10 9 13 13 O 1.45203 * 109.46751 * 239.99838 * 2 1 3 14 14 C 1.34225 * 116.99646 * 90.00471 * 13 2 1 15 15 O 1.20821 * 120.00485 * 359.97438 * 14 13 2 16 16 C 1.50707 * 119.99790 * 179.97438 * 14 13 2 17 17 C 1.53005 * 109.46962 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.46773 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00010 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99798 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99963 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46897 * 60.00116 * 22 20 18 24 24 H 1.48498 * 109.46993 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47002 * 300.00097 * 22 20 18 26 26 H 1.09003 * 109.46425 * 300.00092 * 1 2 3 27 27 H 1.09004 * 109.46887 * 59.99647 * 1 2 3 28 28 H 1.08995 * 109.47045 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47428 * 64.99735 * 4 2 1 30 30 H 1.09003 * 109.47384 * 304.99334 * 4 2 1 31 31 H 1.07995 * 120.85538 * 359.95598 * 8 7 6 32 32 H 1.08002 * 120.34419 * 179.97438 * 9 8 7 33 33 H 1.08008 * 119.45676 * 179.70343 * 10 9 8 34 34 H 1.08003 * 119.71052 * 179.72342 * 12 11 10 35 35 H 1.08994 * 109.47302 * 299.99838 * 16 14 13 36 36 H 1.09004 * 109.47016 * 60.00251 * 16 14 13 37 37 H 1.08994 * 109.47297 * 300.00229 * 17 16 14 38 38 H 1.09004 * 109.46733 * 60.00465 * 17 16 14 39 39 H 0.96995 * 119.99488 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5070 -0.6175 1.3112 6 6 4.6770 -0.5347 1.3606 7 6 6.1043 -0.4336 1.4209 8 6 6.7424 0.7863 1.1689 9 6 8.1236 0.8310 1.2404 10 6 8.8231 -0.3216 1.5499 11 7 8.1944 -1.4565 1.7878 12 6 6.8817 -1.5491 1.7323 13 8 2.0140 -0.6845 -1.1856 14 6 2.2171 0.0640 -2.2811 15 8 1.9975 1.2516 -2.2506 16 6 2.7193 -0.5771 -3.5492 17 6 2.8632 0.4890 -4.6372 18 6 3.3647 -0.1522 -5.9055 19 1 3.5615 -1.2137 -5.9326 20 6 3.5733 0.6166 -7.0308 21 7 3.3341 1.9094 -6.9976 22 14 4.1956 -0.1780 -8.6027 23 1 3.2298 -1.2137 -9.0497 24 1 4.3352 0.8566 -9.6587 25 1 5.5159 -0.8088 -8.3493 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.7516 -1.7715 1.2056 30 1 1.6055 -0.2617 2.1370 31 1 6.1716 1.6699 0.9246 32 1 8.6501 1.7549 1.0517 33 1 9.9015 -0.2907 1.6016 34 1 6.4032 -2.4972 1.9292 35 1 3.6883 -1.0401 -3.3632 36 1 2.0103 -1.3373 -3.8774 37 1 1.8940 0.9516 -4.8231 38 1 3.5720 1.2494 -4.3092 39 1 3.4805 2.4501 -7.7894 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348617608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:51 Heat of formation + Delta-G solvation = -25.493273 kcal Electronic energy + Delta-G solvation = -20934.982858 eV Core-core repulsion = 17615.344384 eV Total energy + Delta-G solvation = -3319.638475 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.26295 -40.10668 -36.85464 -34.89216 -33.60262 -33.32129 -32.27273 -31.14385 -30.62689 -27.46661 -26.10904 -23.92750 -23.71915 -22.90204 -21.19037 -19.80503 -18.41240 -17.50499 -17.09997 -16.47761 -16.36646 -15.89597 -15.68598 -14.93208 -14.52222 -14.35685 -14.15250 -13.89719 -13.71111 -13.33213 -13.16313 -12.79705 -12.33792 -12.29662 -12.20439 -12.07316 -11.41788 -11.29091 -11.11550 -10.94548 -10.67046 -10.49834 -10.28911 -10.05100 -9.95316 -9.89806 -9.61887 -9.54827 -9.19665 -8.82682 -8.37977 -6.02027 -4.06953 0.52431 1.00824 2.40461 2.76474 2.82763 3.09054 3.32623 3.37129 3.39587 3.71112 3.83165 4.25177 4.43763 4.62654 4.66846 4.71632 4.82418 4.91833 5.03565 5.13315 5.16111 5.33334 5.35996 5.40855 5.48168 5.62301 5.74134 5.83929 5.84741 5.96673 6.05242 6.12037 6.20551 6.40689 6.65875 6.94408 7.35741 7.65339 7.69508 7.72506 7.97276 8.25433 8.41406 8.99847 9.57102 11.08973 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.010654 B = 0.003856 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.387172 B = 7259.093332 C = 9264.638994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.084 3.916 3 H 0.087 0.913 4 C -0.004 4.004 5 C -0.132 4.132 6 C -0.151 4.151 7 C -0.025 4.025 8 C -0.054 4.054 9 C -0.168 4.168 10 C 0.100 3.900 11 N -0.483 5.483 12 C 0.121 3.879 13 O -0.359 6.359 14 C 0.457 3.543 15 O -0.506 6.506 16 C -0.104 4.104 17 C 0.035 3.965 18 C -0.529 4.529 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.890 5.890 22 Si 0.896 3.104 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.026 0.974 38 H 0.025 0.975 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 -4.616 20.612 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.028 3.972 3 H 0.105 0.895 4 C -0.040 4.040 5 C -0.132 4.132 6 C -0.152 4.152 7 C -0.027 4.027 8 C -0.080 4.080 9 C -0.188 4.188 10 C -0.056 4.056 11 N -0.191 5.191 12 C -0.036 4.036 13 O -0.277 6.277 14 C 0.301 3.699 15 O -0.392 6.392 16 C -0.142 4.142 17 C -0.003 4.003 18 C -0.568 4.568 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.528 5.528 22 Si 0.723 3.277 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.176 0.824 34 H 0.177 0.823 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.602 -4.814 20.746 21.456 hybrid contribution -0.200 0.610 -1.111 1.283 sum 2.402 -4.204 19.635 20.223 Atomic orbital electron populations 1.22186 0.93720 1.03206 1.03440 1.22547 0.94443 0.97490 0.82672 0.89542 1.18945 0.84420 1.03356 0.97303 1.22077 0.93324 0.99020 0.98756 1.18746 0.90728 1.02987 1.02710 1.16870 0.87783 0.95256 1.02840 1.21758 0.94745 0.97211 0.94280 1.22124 0.94431 1.00620 1.01617 1.22892 1.00717 0.87884 0.94120 1.67701 1.10083 1.27622 1.13694 1.22934 0.88957 0.97613 0.94121 1.86645 1.77553 1.43007 1.20505 1.24749 0.73689 0.86371 0.85086 1.90614 1.47770 1.16961 1.83863 1.21766 1.01677 1.01990 0.88723 1.19000 0.98491 0.92423 0.90345 1.21124 1.45175 0.94701 0.95761 0.92377 1.25012 0.95444 0.94806 0.98972 1.69984 1.48277 1.05022 1.29541 0.86605 0.79426 0.78948 0.82716 1.20132 1.21223 1.20158 0.90812 0.91280 0.91320 0.87898 0.87287 0.84305 0.84100 0.82381 0.82297 0.89131 0.88964 0.95600 0.95702 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 9.55 37.16 0.35 -1.42 16 2 C 0.08 1.08 2.53 -26.73 -0.07 1.02 16 3 H 0.09 1.27 7.15 -51.93 -0.37 0.90 16 4 C 0.00 -0.04 5.43 -29.52 -0.16 -0.20 16 5 C -0.13 -1.67 13.10 -37.12 -0.49 -2.16 16 6 C -0.15 -2.03 13.28 -38.83 -0.52 -2.55 16 7 C -0.03 -0.32 5.74 -106.85 -0.61 -0.93 16 8 C -0.05 -0.61 9.90 -38.89 -0.39 -1.00 16 9 C -0.17 -1.58 10.10 -39.50 -0.40 -1.98 16 10 C 0.10 0.98 11.17 -17.49 -0.20 0.78 16 11 N -0.48 -5.76 10.35 -12.92 -0.13 -5.89 16 12 C 0.12 1.42 10.92 -17.14 -0.19 1.24 16 13 O -0.36 -5.92 9.63 -39.24 -0.38 -6.30 16 14 C 0.46 9.14 7.93 36.01 0.29 9.43 16 15 O -0.51 -11.50 15.20 -18.75 -0.28 -11.79 16 16 C -0.10 -2.18 5.75 -27.88 -0.16 -2.34 16 17 C 0.03 0.92 4.26 -27.88 -0.12 0.80 16 18 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -27.11 13.29 55.43 0.74 -26.38 16 22 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 34 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 35 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 36 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 37 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -34.46 352.18 -8.24 -42.70 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.40 Total: -1.24 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -3.06 Total: -12.95 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.60 Total: -32.27 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.66 Total: -18.09 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.46 -8.24 -42.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348617608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.203 kcal (2) G-P(sol) polarization free energy of solvation -34.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds