Wall clock time and date at job start Tue Mar 31 2020 06:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47389 * 2 1 4 4 C 1.52996 * 109.46954 * 120.00223 * 2 1 3 5 5 C 1.47199 * 109.46995 * 184.99800 * 4 2 1 6 6 C 3.46997 * 155.08326 * 111.45232 * 2 1 3 7 7 C 4.80942 * 162.00748 * 106.97056 * 2 1 3 8 8 C 1.39964 * 120.55258 * 166.45895 * 7 6 5 9 9 C 1.38375 * 118.29005 * 179.97438 * 8 7 6 10 10 C 1.38333 * 119.30133 * 0.28094 * 9 8 7 11 11 N 1.31902 * 121.07795 * 359.43794 * 10 9 8 12 12 C 1.31714 * 121.86797 * 0.55395 * 11 10 9 13 13 O 1.45203 * 109.46751 * 239.99838 * 2 1 3 14 14 C 1.34225 * 116.99646 * 90.00471 * 13 2 1 15 15 O 1.20821 * 120.00485 * 359.97438 * 14 13 2 16 16 C 1.50707 * 119.99790 * 179.97438 * 14 13 2 17 17 C 1.53005 * 109.46962 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.46773 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00010 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99798 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99963 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46897 * 60.00116 * 22 20 18 24 24 H 1.48498 * 109.46993 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47002 * 300.00097 * 22 20 18 26 26 H 1.09003 * 109.46425 * 300.00092 * 1 2 3 27 27 H 1.09004 * 109.46887 * 59.99647 * 1 2 3 28 28 H 1.08995 * 109.47045 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47428 * 64.99735 * 4 2 1 30 30 H 1.09003 * 109.47384 * 304.99334 * 4 2 1 31 31 H 1.07995 * 120.85538 * 359.95598 * 8 7 6 32 32 H 1.08002 * 120.34419 * 179.97438 * 9 8 7 33 33 H 1.08008 * 119.45676 * 179.70343 * 10 9 8 34 34 H 1.08003 * 119.71052 * 179.72342 * 12 11 10 35 35 H 1.08994 * 109.47302 * 299.99838 * 16 14 13 36 36 H 1.09004 * 109.47016 * 60.00251 * 16 14 13 37 37 H 1.08994 * 109.47297 * 300.00229 * 17 16 14 38 38 H 1.09004 * 109.46733 * 60.00465 * 17 16 14 39 39 H 0.96995 * 119.99488 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5070 -0.6175 1.3112 6 6 4.6770 -0.5347 1.3606 7 6 6.1043 -0.4336 1.4209 8 6 6.7424 0.7863 1.1689 9 6 8.1236 0.8310 1.2404 10 6 8.8231 -0.3216 1.5499 11 7 8.1944 -1.4565 1.7878 12 6 6.8817 -1.5491 1.7323 13 8 2.0140 -0.6845 -1.1856 14 6 2.2171 0.0640 -2.2811 15 8 1.9975 1.2516 -2.2506 16 6 2.7193 -0.5771 -3.5492 17 6 2.8632 0.4890 -4.6372 18 6 3.3647 -0.1522 -5.9055 19 1 3.5615 -1.2137 -5.9326 20 6 3.5733 0.6166 -7.0308 21 7 3.3341 1.9094 -6.9976 22 14 4.1956 -0.1780 -8.6027 23 1 3.2298 -1.2137 -9.0497 24 1 4.3352 0.8566 -9.6587 25 1 5.5159 -0.8088 -8.3493 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.7516 -1.7715 1.2056 30 1 1.6055 -0.2617 2.1370 31 1 6.1716 1.6699 0.9246 32 1 8.6501 1.7549 1.0517 33 1 9.9015 -0.2907 1.6016 34 1 6.4032 -2.4972 1.9292 35 1 3.6883 -1.0401 -3.3632 36 1 2.0103 -1.3373 -3.8774 37 1 1.8940 0.9516 -4.8231 38 1 3.5720 1.2494 -4.3092 39 1 3.4805 2.4501 -7.7894 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348617608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:50 Heat of formation + Delta-G solvation = -44.718257 kcal Electronic energy + Delta-G solvation = -20935.816516 eV Core-core repulsion = 17615.344384 eV Total energy + Delta-G solvation = -3320.472133 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59943 -41.07484 -38.22892 -35.93491 -35.67336 -34.33316 -33.21535 -32.97955 -31.57935 -28.30400 -28.11098 -24.92087 -24.56043 -24.47610 -22.57421 -21.38441 -19.29107 -19.18575 -18.23879 -17.89730 -17.38915 -17.28360 -17.04480 -16.50911 -16.08450 -15.27423 -15.17836 -14.91285 -14.85760 -14.51999 -14.24321 -14.15755 -13.85019 -13.67342 -13.27617 -13.08758 -13.04137 -12.82143 -12.56186 -12.45064 -12.12691 -12.03449 -11.80328 -11.65219 -11.43766 -11.28072 -11.24724 -10.75910 -10.59095 -10.47318 -9.69532 -8.21931 -6.36210 -0.32292 0.17644 1.22405 1.41310 1.43780 1.45952 1.53659 1.74829 1.85261 2.41756 2.85474 2.97458 3.11602 3.49262 3.77156 3.82265 3.86378 3.90425 3.91973 4.08930 4.16066 4.30886 4.37690 4.39846 4.62762 4.64464 4.72068 4.75019 4.80228 4.86883 4.97600 5.02367 5.14567 5.20181 5.40481 5.46599 5.51307 5.62194 5.77536 6.10803 6.41291 6.77473 6.84736 6.87055 7.34161 8.90547 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.010654 B = 0.003856 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.387172 B = 7259.093332 C = 9264.638994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.074 3.926 3 H 0.063 0.937 4 C 0.003 3.997 5 C -0.141 4.141 6 C -0.178 4.178 7 C -0.049 4.049 8 C -0.071 4.071 9 C -0.162 4.162 10 C 0.098 3.902 11 N -0.503 5.503 12 C 0.113 3.887 13 O -0.353 6.353 14 C 0.465 3.535 15 O -0.543 6.543 16 C -0.097 4.097 17 C 0.042 3.958 18 C -0.548 4.548 19 H 0.075 0.925 20 C -0.001 4.001 21 N -0.935 5.935 22 Si 0.974 3.026 23 H -0.262 1.262 24 H -0.285 1.285 25 H -0.264 1.264 26 H 0.107 0.893 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.126 0.874 30 H 0.149 0.851 31 H 0.140 0.860 32 H 0.171 0.829 33 H 0.191 0.809 34 H 0.170 0.830 35 H 0.107 0.893 36 H 0.116 0.884 37 H -0.009 1.009 38 H -0.013 1.013 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.532 -6.390 21.233 22.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.020 3.980 3 H 0.082 0.918 4 C -0.033 4.033 5 C -0.141 4.141 6 C -0.179 4.179 7 C -0.051 4.051 8 C -0.096 4.096 9 C -0.182 4.182 10 C -0.058 4.058 11 N -0.212 5.212 12 C -0.044 4.044 13 O -0.270 6.270 14 C 0.310 3.690 15 O -0.432 6.432 16 C -0.134 4.134 17 C 0.004 3.996 18 C -0.586 4.586 19 H 0.094 0.906 20 C -0.199 4.199 21 N -0.574 5.574 22 Si 0.797 3.203 23 H -0.186 1.186 24 H -0.211 1.211 25 H -0.189 1.189 26 H 0.126 0.874 27 H 0.059 0.941 28 H 0.106 0.894 29 H 0.144 0.856 30 H 0.167 0.833 31 H 0.157 0.843 32 H 0.189 0.811 33 H 0.208 0.792 34 H 0.187 0.813 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.010 0.990 38 H 0.005 0.995 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.954 -6.626 21.399 22.596 hybrid contribution -0.298 1.208 -1.194 1.724 sum 2.657 -5.418 20.206 21.088 Atomic orbital electron populations 1.22191 0.91489 1.04579 1.03727 1.22978 0.96267 0.96622 0.82159 0.91829 1.19179 0.82626 1.04696 0.96751 1.22810 0.94322 0.98448 0.98547 1.19262 0.91552 1.03831 1.03270 1.17074 0.87799 0.96117 1.04142 1.21975 0.95920 0.97001 0.94753 1.22458 0.93649 1.01814 1.00246 1.23485 1.02258 0.87309 0.92758 1.67746 1.10115 1.28810 1.14481 1.23113 0.89149 0.97933 0.94205 1.86590 1.77144 1.42576 1.20681 1.24385 0.73038 0.85720 0.85819 1.90605 1.49513 1.18495 1.84629 1.21508 1.03427 1.00486 0.87963 1.18760 0.95432 0.93035 0.92324 1.21607 1.44942 0.95653 0.96365 0.90645 1.26083 0.95444 0.95258 1.03158 1.70151 1.49571 1.06923 1.30780 0.85374 0.79321 0.78043 0.77544 1.18627 1.21077 1.18883 0.87438 0.94101 0.89361 0.85621 0.83316 0.84262 0.81141 0.79207 0.81260 0.87530 0.86565 0.99009 0.99488 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 9.55 71.98 0.69 -2.41 16 2 C 0.07 1.83 2.53 30.59 0.08 1.91 16 3 H 0.06 1.88 7.15 -2.39 -0.02 1.87 16 4 C 0.00 0.05 5.43 28.79 0.16 0.21 16 5 C -0.14 -3.47 13.10 31.12 0.41 -3.07 16 6 C -0.18 -4.85 13.28 30.02 0.40 -4.45 16 7 C -0.05 -1.26 5.74 -21.31 -0.12 -1.38 16 8 C -0.07 -1.61 9.90 22.72 0.23 -1.38 16 9 C -0.16 -2.85 10.10 22.33 0.23 -2.62 16 10 C 0.10 1.77 11.17 84.71 0.95 2.72 16 11 N -0.50 -11.66 10.35 -194.79 -2.02 -13.67 16 12 C 0.11 2.66 10.92 85.01 0.93 3.59 16 13 O -0.35 -11.39 9.63 -51.37 -0.49 -11.88 16 14 C 0.47 18.92 7.93 71.24 0.56 19.48 16 15 O -0.54 -25.81 15.20 21.98 0.33 -25.48 16 16 C -0.10 -4.06 5.75 29.85 0.17 -3.89 16 17 C 0.04 2.31 4.26 29.85 0.13 2.44 16 18 C -0.55 -31.17 9.11 25.60 0.23 -30.94 16 19 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 20 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 21 N -0.93 -58.48 13.29 21.45 0.28 -58.19 16 22 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 24 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 26 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.15 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 32 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 34 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 36 H 0.12 4.32 8.14 -2.39 -0.02 4.30 16 37 H -0.01 -0.52 8.10 -2.39 -0.02 -0.54 16 38 H -0.01 -0.83 8.10 -2.39 -0.02 -0.85 16 39 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -78.07 352.18 6.67 -71.40 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 1.04 Total: 11.18 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 5.49 Total: -19.42 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -1.73 Total: -71.86 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.16 Total: -37.36 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -78.07 6.67 -71.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348617608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.681 kcal (2) G-P(sol) polarization free energy of solvation -78.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds