Wall clock time and date at job start Tue Mar 31 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.45305 * 2 1 4 4 C 1.53035 * 109.46594 * 240.03081 * 2 1 3 5 5 C 1.53115 * 109.28219 * 180.80426 * 4 2 1 6 6 C 1.53124 * 109.15950 * 57.64821 * 5 4 2 7 7 H 1.08997 * 109.53124 * 62.31009 * 6 5 4 8 8 C 1.50698 * 109.50257 * 182.40452 * 6 5 4 9 9 O 1.20827 * 119.99845 * 119.80366 * 8 6 5 10 10 O 1.34224 * 120.00287 * 299.80755 * 8 6 5 11 11 C 1.53032 * 109.27817 * 302.35012 * 6 5 4 12 12 N 1.46842 * 109.46182 * 119.97204 * 2 1 3 13 13 C 1.46899 * 111.00224 * 305.85736 * 12 2 1 14 14 C 1.52997 * 109.47254 * 301.83648 * 13 12 2 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 16 16 S 1.80997 * 109.47641 * 179.97438 * 15 14 13 17 17 C 1.76204 * 100.00365 * 180.02562 * 16 15 14 18 18 H 1.07992 * 119.99729 * 0.02562 * 17 16 15 19 19 C 1.38797 * 119.99828 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00295 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99600 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46911 * 60.00642 * 21 19 17 23 23 H 1.48499 * 109.46881 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47291 * 300.00337 * 21 19 17 25 25 H 1.08989 * 109.47069 * 300.02768 * 1 2 3 26 26 H 1.09004 * 109.46617 * 60.03041 * 1 2 3 27 27 H 1.08996 * 109.46831 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.50467 * 60.86136 * 4 2 1 29 29 H 1.09005 * 109.49923 * 300.74132 * 4 2 1 30 30 H 1.09004 * 109.52022 * 297.74760 * 5 4 2 31 31 H 1.09001 * 109.52836 * 177.55380 * 5 4 2 32 32 H 0.96701 * 116.99922 * 179.97438 * 10 8 6 33 33 H 1.09003 * 109.46697 * 299.15746 * 11 6 5 34 34 H 1.09005 * 109.45482 * 179.19115 * 11 6 5 35 35 H 1.09002 * 109.47043 * 61.83719 * 13 12 2 36 36 H 1.09001 * 109.47354 * 181.83780 * 13 12 2 37 37 H 1.09002 * 109.47153 * 300.00004 * 14 13 12 38 38 H 1.08998 * 109.47533 * 59.99633 * 14 13 12 39 39 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 40 40 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 41 41 H 0.96999 * 119.99948 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0279 0.0000 4 6 2.0400 -0.7208 -1.2500 5 6 3.5710 -0.7359 -1.2356 6 6 4.0549 -1.4186 0.0468 7 1 3.7132 -2.4536 0.0598 8 6 5.5606 -1.3853 0.0971 9 8 6.1223 -0.8261 1.0091 10 8 6.2778 -1.9767 -0.8711 11 6 3.4865 -0.6776 1.2590 12 7 2.0193 -0.6917 1.1994 13 6 1.4373 -0.1105 2.4165 14 6 1.7844 1.3779 2.4874 15 6 1.1777 1.9833 3.7547 16 16 1.5889 3.7439 3.8390 17 6 0.7898 4.1729 5.3497 18 1 0.2547 3.4206 5.9100 19 6 0.8491 5.4775 5.8200 20 7 1.5017 6.3943 5.1372 21 14 0.0013 5.9323 7.4211 22 1 0.5713 5.1252 8.5297 23 1 0.2119 7.3756 7.7000 24 1 -1.4536 5.6580 7.3063 25 1 -0.3633 0.5142 0.8896 26 1 -0.3633 0.5134 -0.8903 27 1 -0.3633 -1.0276 0.0005 28 1 1.6896 -0.1980 -2.1399 29 1 1.6661 -1.7446 -1.2576 30 1 3.9457 0.2872 -1.2672 31 1 3.9381 -1.2862 -2.1020 32 1 7.2407 -1.9286 -0.7958 33 1 3.8403 0.3534 1.2533 34 1 3.8175 -1.1699 2.1735 35 1 0.3541 -0.2304 2.3943 36 1 1.8413 -0.6198 3.2914 37 1 2.8675 1.4977 2.5096 38 1 1.3804 1.8873 1.6125 39 1 0.0945 1.8635 3.7320 40 1 1.5814 1.4741 4.6298 41 1 1.5434 7.3059 5.4661 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589308733.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:36 Heat of formation + Delta-G solvation = -113.100830 kcal Electronic energy + Delta-G solvation = -20898.177411 eV Core-core repulsion = 17710.183939 eV Total energy + Delta-G solvation = -3187.993472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84259 -39.30219 -36.36236 -35.04304 -32.80437 -32.42025 -31.44878 -27.89168 -26.27697 -25.47893 -23.79385 -22.94291 -21.87866 -20.76997 -19.19339 -18.20093 -17.45774 -16.99336 -16.18446 -15.74198 -15.18895 -14.83232 -14.79226 -14.36970 -14.31140 -13.89781 -13.54804 -13.27553 -12.93772 -12.67949 -12.39856 -12.04898 -11.91925 -11.75558 -11.68838 -11.49095 -11.37304 -11.15149 -11.03302 -10.94673 -10.79956 -10.68741 -10.51143 -10.39461 -10.15852 -9.68729 -9.03842 -8.37253 -8.13835 -6.51717 -6.21250 -3.91705 1.99187 2.72860 3.22920 3.24228 3.28748 3.59560 3.92241 4.23897 4.35280 4.52036 4.62148 4.84518 5.08197 5.12988 5.14578 5.23734 5.28296 5.29118 5.41554 5.44286 5.55857 5.61944 5.65768 5.72597 5.73188 5.79433 5.80112 5.93317 5.94747 6.06107 6.18755 6.20501 6.26327 6.38904 6.53283 6.74095 7.03080 7.08155 7.61533 7.66827 8.37836 9.24819 10.86928 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.023774 B = 0.003326 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.471650 B = 8417.604704 C = 9072.268123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.071 3.929 3 H 0.051 0.949 4 C -0.109 4.109 5 C -0.113 4.113 6 C -0.075 4.075 7 H 0.116 0.884 8 C 0.482 3.518 9 O -0.509 6.509 10 O -0.517 6.517 11 C 0.066 3.934 12 N -0.530 5.530 13 C 0.057 3.943 14 C -0.136 4.136 15 C -0.108 4.108 16 S -0.137 6.137 17 C -0.516 4.516 18 H 0.072 0.928 19 C 0.071 3.929 20 N -0.870 5.870 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.409 0.591 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 -17.758 -14.357 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.037 4.037 3 H 0.069 0.931 4 C -0.147 4.147 5 C -0.150 4.150 6 C -0.094 4.094 7 H 0.134 0.866 8 C 0.323 3.677 9 O -0.397 6.397 10 O -0.329 6.329 11 C -0.062 4.062 12 N -0.254 5.254 13 C -0.072 4.072 14 C -0.176 4.176 15 C -0.257 4.257 16 S 0.091 5.909 17 C -0.664 4.664 18 H 0.090 0.910 19 C -0.138 4.138 20 N -0.506 5.506 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.267 0.733 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.535 -17.266 -14.888 23.071 hybrid contribution -0.190 0.514 2.052 2.123 sum 3.345 -16.752 -12.836 21.368 Atomic orbital electron populations 1.21905 0.93997 1.02348 1.02346 1.21720 0.95826 0.96283 0.89905 0.93084 1.21633 0.93924 1.01819 0.97277 1.21592 0.96939 1.00932 0.95558 1.21038 0.85962 1.04009 0.98424 0.86590 1.23517 0.91406 0.74185 0.78551 1.90768 1.72976 1.41085 1.34825 1.84525 1.25558 1.72449 1.50402 1.21908 0.87948 0.99835 0.96529 1.62195 1.05933 1.54608 1.02629 1.22317 1.00485 0.92967 0.91459 1.21951 1.01468 0.95862 0.98307 1.23168 1.01956 1.01824 0.98794 1.84637 1.72096 1.00912 1.33235 1.22646 1.38467 0.97674 1.07635 0.91010 1.25016 0.95361 0.95394 0.98019 1.70018 1.39756 1.02635 1.38187 0.86225 0.79727 0.77471 0.82116 1.19922 1.20829 1.19932 0.91722 0.92249 0.91967 0.90866 0.90746 0.91467 0.90382 0.73251 0.92994 0.89761 0.89960 0.90682 0.91572 0.91359 0.92156 0.92161 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.68 37.16 0.32 -1.18 16 2 C 0.07 0.76 1.84 -67.72 -0.12 0.64 16 3 H 0.05 0.64 6.61 -51.92 -0.34 0.30 16 4 C -0.11 -0.91 5.37 -26.65 -0.14 -1.06 16 5 C -0.11 -0.96 5.22 -26.61 -0.14 -1.09 16 6 C -0.07 -0.72 2.79 -91.69 -0.26 -0.97 16 7 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 8 C 0.48 5.08 7.63 36.00 0.27 5.36 16 9 O -0.51 -7.27 16.74 -18.75 -0.31 -7.58 16 10 O -0.52 -3.96 13.36 -39.24 -0.52 -4.48 16 11 C 0.07 0.79 3.62 -3.84 -0.01 0.77 16 12 N -0.53 -6.16 4.69 -226.69 -1.06 -7.23 16 13 C 0.06 0.74 4.79 -3.83 -0.02 0.72 16 14 C -0.14 -2.23 4.41 -26.74 -0.12 -2.35 16 15 C -0.11 -2.20 5.67 37.15 0.21 -1.99 16 16 S -0.14 -3.65 21.44 -107.50 -2.30 -5.95 16 17 C -0.52 -15.02 9.50 30.94 0.29 -14.73 16 18 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 19 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 20 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 21 Si 0.92 21.79 29.55 -169.99 -5.02 16.76 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 H 0.06 0.74 6.07 -51.94 -0.32 0.42 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.41 1.53 9.10 45.56 0.41 1.95 16 33 H 0.05 0.73 6.69 -51.93 -0.35 0.38 16 34 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 35 H 0.08 1.03 6.32 -51.93 -0.33 0.71 16 36 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 37 H 0.07 1.16 6.68 -51.93 -0.35 0.81 16 38 H 0.07 1.13 6.23 -51.93 -0.32 0.81 16 39 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 40 H 0.06 1.23 8.14 -51.91 -0.42 0.80 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 338.56 15.07 5.10 5.10 Total: -1.00 -33.61 338.56 -8.98 -42.59 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.78 Total: 0.36 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 0.19 Total: -13.92 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: -0.33 Total: -32.87 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.84 Total: -12.06 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -2.30 Total: -5.95 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.61 -8.98 -42.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589308733.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.515 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds