Wall clock time and date at job start Tue Mar 31 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.45305 * 2 1 4 4 C 1.53035 * 109.46594 * 240.03081 * 2 1 3 5 5 C 1.53115 * 109.28219 * 180.80426 * 4 2 1 6 6 C 1.53124 * 109.15950 * 57.64821 * 5 4 2 7 7 H 1.08997 * 109.53124 * 62.31009 * 6 5 4 8 8 C 1.50698 * 109.50257 * 182.40452 * 6 5 4 9 9 O 1.20827 * 119.99845 * 119.80366 * 8 6 5 10 10 O 1.34224 * 120.00287 * 299.80755 * 8 6 5 11 11 C 1.53032 * 109.27817 * 302.35012 * 6 5 4 12 12 N 1.46842 * 109.46182 * 119.97204 * 2 1 3 13 13 C 1.46899 * 111.00224 * 305.85736 * 12 2 1 14 14 C 1.52997 * 109.47254 * 301.83648 * 13 12 2 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 16 16 S 1.80997 * 109.47641 * 179.97438 * 15 14 13 17 17 C 1.76204 * 100.00365 * 180.02562 * 16 15 14 18 18 H 1.07992 * 119.99729 * 0.02562 * 17 16 15 19 19 C 1.38797 * 119.99828 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00295 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99600 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46911 * 60.00642 * 21 19 17 23 23 H 1.48499 * 109.46881 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47291 * 300.00337 * 21 19 17 25 25 H 1.08989 * 109.47069 * 300.02768 * 1 2 3 26 26 H 1.09004 * 109.46617 * 60.03041 * 1 2 3 27 27 H 1.08996 * 109.46831 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.50467 * 60.86136 * 4 2 1 29 29 H 1.09005 * 109.49923 * 300.74132 * 4 2 1 30 30 H 1.09004 * 109.52022 * 297.74760 * 5 4 2 31 31 H 1.09001 * 109.52836 * 177.55380 * 5 4 2 32 32 H 0.96701 * 116.99922 * 179.97438 * 10 8 6 33 33 H 1.09003 * 109.46697 * 299.15746 * 11 6 5 34 34 H 1.09005 * 109.45482 * 179.19115 * 11 6 5 35 35 H 1.09002 * 109.47043 * 61.83719 * 13 12 2 36 36 H 1.09001 * 109.47354 * 181.83780 * 13 12 2 37 37 H 1.09002 * 109.47153 * 300.00004 * 14 13 12 38 38 H 1.08998 * 109.47533 * 59.99633 * 14 13 12 39 39 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 40 40 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 41 41 H 0.96999 * 119.99948 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0279 0.0000 4 6 2.0400 -0.7208 -1.2500 5 6 3.5710 -0.7359 -1.2356 6 6 4.0549 -1.4186 0.0468 7 1 3.7132 -2.4536 0.0598 8 6 5.5606 -1.3853 0.0971 9 8 6.1223 -0.8261 1.0091 10 8 6.2778 -1.9767 -0.8711 11 6 3.4865 -0.6776 1.2590 12 7 2.0193 -0.6917 1.1994 13 6 1.4373 -0.1105 2.4165 14 6 1.7844 1.3779 2.4874 15 6 1.1777 1.9833 3.7547 16 16 1.5889 3.7439 3.8390 17 6 0.7898 4.1729 5.3497 18 1 0.2547 3.4206 5.9100 19 6 0.8491 5.4775 5.8200 20 7 1.5017 6.3943 5.1372 21 14 0.0013 5.9323 7.4211 22 1 0.5713 5.1252 8.5297 23 1 0.2119 7.3756 7.7000 24 1 -1.4536 5.6580 7.3063 25 1 -0.3633 0.5142 0.8896 26 1 -0.3633 0.5134 -0.8903 27 1 -0.3633 -1.0276 0.0005 28 1 1.6896 -0.1980 -2.1399 29 1 1.6661 -1.7446 -1.2576 30 1 3.9457 0.2872 -1.2672 31 1 3.9381 -1.2862 -2.1020 32 1 7.2407 -1.9286 -0.7958 33 1 3.8403 0.3534 1.2533 34 1 3.8175 -1.1699 2.1735 35 1 0.3541 -0.2304 2.3943 36 1 1.8413 -0.6198 3.2914 37 1 2.8675 1.4977 2.5096 38 1 1.3804 1.8873 1.6125 39 1 0.0945 1.8635 3.7320 40 1 1.5814 1.4741 4.6298 41 1 1.5434 7.3059 5.4661 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589308733.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:36 Heat of formation + Delta-G solvation = -136.121104 kcal Electronic energy + Delta-G solvation = -20899.175645 eV Core-core repulsion = 17710.183939 eV Total energy + Delta-G solvation = -3188.991706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.69192 -40.21388 -37.14861 -36.08291 -34.62849 -33.70179 -32.64756 -28.69031 -27.94714 -27.17700 -24.79688 -23.94118 -22.95090 -21.61048 -20.19805 -19.52523 -19.01116 -17.86947 -17.04978 -16.91680 -16.77714 -16.39696 -15.98835 -15.65642 -15.41040 -14.98862 -14.70467 -14.55666 -14.05986 -13.73371 -13.52649 -13.31493 -13.08018 -12.96229 -12.85020 -12.79862 -12.59375 -12.54097 -12.52495 -12.26970 -11.99407 -11.76766 -11.59470 -11.44556 -11.33313 -11.15907 -11.12589 -10.38645 -9.27769 -8.70636 -8.39202 -6.16678 1.16854 1.29525 1.39556 1.46285 1.72907 2.00006 2.26756 2.94868 2.98189 3.29068 3.53924 3.74674 3.87912 3.89221 4.04515 4.14293 4.26770 4.33639 4.38014 4.45632 4.49949 4.59012 4.68682 4.71834 4.78224 4.86037 4.86634 4.95587 5.03936 5.09662 5.13021 5.21406 5.22134 5.36908 5.37243 5.49118 5.59412 6.01296 6.12326 6.15765 6.97252 7.02467 8.70113 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.023774 B = 0.003326 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.471650 B = 8417.604704 C = 9072.268123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 H 0.027 0.973 4 C -0.102 4.102 5 C -0.109 4.109 6 C -0.070 4.070 7 H 0.138 0.862 8 C 0.489 3.511 9 O -0.555 6.555 10 O -0.506 6.506 11 C 0.067 3.933 12 N -0.518 5.518 13 C 0.065 3.935 14 C -0.121 4.121 15 C -0.082 4.082 16 S -0.208 6.208 17 C -0.538 4.538 18 H 0.074 0.926 19 C 0.014 3.986 20 N -0.909 5.909 21 Si 0.995 3.005 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.262 1.262 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.427 0.573 33 H 0.023 0.977 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 -19.710 -14.985 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.043 4.043 3 H 0.045 0.955 4 C -0.140 4.140 5 C -0.146 4.146 6 C -0.090 4.090 7 H 0.156 0.844 8 C 0.332 3.668 9 O -0.446 6.446 10 O -0.319 6.319 11 C -0.062 4.062 12 N -0.241 5.241 13 C -0.064 4.064 14 C -0.161 4.161 15 C -0.232 4.232 16 S 0.020 5.980 17 C -0.686 4.686 18 H 0.092 0.908 19 C -0.191 4.191 20 N -0.545 5.545 21 Si 0.817 3.183 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.187 1.187 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.289 0.711 33 H 0.041 0.959 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.537 -19.245 -15.555 24.875 hybrid contribution 0.186 1.053 2.147 2.399 sum 2.723 -18.192 -13.408 22.762 Atomic orbital electron populations 1.21882 0.93210 1.03035 1.02120 1.21851 0.96488 0.95368 0.90597 0.95466 1.21621 0.93592 1.02434 0.96313 1.21597 0.97113 1.00295 0.95615 1.21023 0.85416 1.04830 0.97688 0.84442 1.23652 0.91876 0.73179 0.78059 1.90763 1.73866 1.43237 1.36747 1.84475 1.27151 1.71340 1.48928 1.21853 0.88132 0.98492 0.97705 1.62291 1.05618 1.53817 1.02351 1.22240 1.01382 0.90172 0.92648 1.21853 1.00035 0.98147 0.96068 1.23106 1.02550 0.96773 1.00750 1.84694 1.72868 1.07025 1.33366 1.23007 1.38892 0.98389 1.08306 0.90793 1.26109 0.95839 0.95099 1.02013 1.70161 1.41030 1.03125 1.40212 0.85046 0.78808 0.77465 0.76983 1.18930 1.19945 1.18694 0.93416 0.91097 0.90715 0.89337 0.89274 0.92934 0.88146 0.71126 0.95884 0.90602 0.88704 0.90346 0.93181 0.91723 0.91403 0.92101 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.68 71.98 0.63 -2.03 16 2 C 0.06 1.31 1.84 44.94 0.08 1.39 16 3 H 0.03 0.69 6.61 -2.38 -0.02 0.67 16 4 C -0.10 -1.44 5.37 30.64 0.16 -1.28 16 5 C -0.11 -1.61 5.22 30.67 0.16 -1.45 16 6 C -0.07 -1.24 2.79 -11.49 -0.03 -1.27 16 7 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 8 C 0.49 9.84 7.63 71.24 0.54 10.39 16 9 O -0.56 -16.09 16.74 21.96 0.37 -15.72 16 10 O -0.51 -6.65 13.36 -51.36 -0.69 -7.33 16 11 C 0.07 1.58 3.62 86.32 0.31 1.90 16 12 N -0.52 -11.48 4.69 -871.11 -4.09 -15.57 16 13 C 0.07 1.66 4.79 86.30 0.41 2.08 16 14 C -0.12 -4.04 4.41 30.59 0.13 -3.91 16 15 C -0.08 -3.40 5.67 71.98 0.41 -2.99 16 16 S -0.21 -11.48 21.44 -56.49 -1.21 -12.69 16 17 C -0.54 -31.84 9.50 67.95 0.65 -31.19 16 18 H 0.07 4.18 7.80 -2.91 -0.02 4.16 16 19 C 0.01 0.82 5.49 84.86 0.47 1.29 16 20 N -0.91 -56.13 13.22 21.65 0.29 -55.84 16 21 Si 1.00 44.63 29.55 68.60 2.03 46.65 16 22 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 25 H 0.05 1.03 6.07 -2.39 -0.01 1.02 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.43 2.36 9.10 -74.06 -0.67 1.69 16 33 H 0.02 0.68 6.69 -2.39 -0.02 0.66 16 34 H 0.08 1.91 8.04 -2.38 -0.02 1.89 16 35 H 0.09 2.23 6.32 -2.39 -0.02 2.22 16 36 H 0.08 1.97 8.06 -2.39 -0.02 1.96 16 37 H 0.05 1.84 6.68 -2.39 -0.02 1.82 16 38 H 0.06 2.21 6.23 -2.39 -0.01 2.19 16 39 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.06 2.49 8.14 -2.40 -0.02 2.47 16 41 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -74.41 338.56 0.97 -73.45 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.35 Total: 14.13 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 3.93 Total: -27.08 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -3.80 Total: -71.41 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.32 Total: -23.06 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: -11.48 SS G_CDS: -1.21 Total: -12.69 kcal Total: -74.41 0.97 -73.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589308733.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.675 kcal (2) G-P(sol) polarization free energy of solvation -74.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds