Wall clock time and date at job start Tue Mar 31 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.53619 * 2 1 4 4 C 1.53034 * 109.50286 * 120.10162 * 2 1 3 5 5 N 1.46844 * 109.52178 * 179.12003 * 4 2 1 6 6 C 1.46903 * 111.00120 * 174.16054 * 5 4 2 7 7 C 1.53001 * 109.47302 * 189.99815 * 6 5 4 8 8 C 1.52996 * 109.46970 * 179.97438 * 7 6 5 9 9 S 1.81001 * 109.47170 * 179.97438 * 8 7 6 10 10 C 1.76195 * 100.00156 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00173 * 0.02562 * 10 9 8 12 12 C 1.38798 * 120.00027 * 180.02562 * 10 9 8 13 13 N 1.31628 * 119.99914 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99980 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46882 * 90.00382 * 14 12 10 16 16 H 1.48498 * 109.47570 * 209.99830 * 14 12 10 17 17 H 1.48496 * 109.47471 * 330.00346 * 14 12 10 18 18 C 1.46853 * 111.20063 * 298.25650 * 5 4 2 19 19 C 1.53036 * 109.51922 * 61.74207 * 18 5 4 20 20 C 1.53118 * 109.50187 * 239.90510 * 2 1 3 21 21 H 1.08996 * 109.52536 * 302.37563 * 20 2 1 22 22 C 1.50700 * 109.52394 * 62.50083 * 20 2 1 23 23 O 1.20826 * 120.00162 * 0.27431 * 22 20 2 24 24 O 1.34234 * 120.00068 * 179.97438 * 22 20 2 25 25 H 1.08993 * 109.47015 * 180.09127 * 1 2 3 26 26 H 1.08994 * 109.47092 * 300.09914 * 1 2 3 27 27 H 1.09002 * 109.46759 * 60.09651 * 1 2 3 28 28 H 1.08994 * 109.46113 * 299.13682 * 4 2 1 29 29 H 1.09003 * 109.46069 * 59.10518 * 4 2 1 30 30 H 1.08998 * 109.46772 * 310.00399 * 6 5 4 31 31 H 1.09005 * 109.46606 * 69.99949 * 6 5 4 32 32 H 1.08997 * 109.47195 * 299.99829 * 7 6 5 33 33 H 1.08996 * 109.46932 * 59.99960 * 7 6 5 34 34 H 1.08995 * 109.47655 * 300.00117 * 8 7 6 35 35 H 1.09010 * 109.47331 * 60.00148 * 8 7 6 36 36 H 0.97005 * 119.99752 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.46352 * 181.75583 * 18 5 4 38 38 H 1.08998 * 109.46199 * 301.74359 * 18 5 4 39 39 H 1.09002 * 109.50039 * 180.88254 * 19 18 5 40 40 H 1.09001 * 109.50401 * 60.76250 * 19 18 5 41 41 H 0.96706 * 116.99872 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0273 0.0000 4 6 2.0410 -0.7235 1.2480 5 7 3.5092 -0.7421 1.2378 6 6 4.0373 -1.3060 2.4873 7 6 5.5497 -1.0829 2.5485 8 6 6.0995 -1.6696 3.8501 9 16 7.8888 -1.4064 3.9222 10 6 8.2463 -2.1576 5.4754 11 1 7.4505 -2.5965 6.0589 12 6 9.5506 -2.1851 5.9491 13 7 9.8177 -2.7467 7.1092 14 14 10.9272 -1.4265 4.9397 15 1 11.0852 0.0021 5.3129 16 1 12.1952 -2.1513 5.2080 17 1 10.5955 -1.5271 3.4957 18 6 4.0230 -1.4730 0.0723 19 6 3.5712 -0.7719 -1.2108 20 6 2.0412 -0.7237 -1.2488 21 1 1.6443 -1.7386 -1.2697 22 6 1.5911 0.0185 -2.4807 23 8 0.9335 1.0262 -2.3723 24 8 1.9260 -0.4367 -3.6983 25 1 -0.3633 -1.0276 0.0016 26 1 -0.3633 0.5153 0.8890 27 1 -0.3633 0.5124 -0.8909 28 1 1.6905 -0.2024 2.1388 29 1 1.6648 -1.7465 1.2542 30 1 3.5628 -0.8145 3.3367 31 1 3.8259 -2.3748 2.5214 32 1 6.0241 -1.5745 1.6991 33 1 5.7610 -0.0142 2.5143 34 1 5.6251 -1.1778 4.6993 35 1 5.8881 -2.7385 3.8848 36 1 10.7293 -2.7656 7.4405 37 1 5.1121 -1.4962 0.1093 38 1 3.6373 -2.4924 0.0839 39 1 3.9395 -1.3234 -2.0759 40 1 3.9678 0.2433 -1.2298 41 1 1.6139 0.0730 -4.4586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589401280.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:29 Heat of formation + Delta-G solvation = -114.251790 kcal Electronic energy + Delta-G solvation = -20483.973891 eV Core-core repulsion = 17295.930509 eV Total energy + Delta-G solvation = -3188.043382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.04435 -39.07609 -36.60101 -35.32686 -32.53722 -32.43328 -32.08800 -27.45309 -26.79563 -25.65047 -23.96040 -22.63231 -22.03304 -20.49118 -19.94441 -18.35667 -17.47743 -17.17254 -16.14751 -15.71855 -15.43297 -14.99590 -14.96500 -14.62250 -14.11215 -14.03160 -13.87069 -13.34491 -12.85149 -12.80839 -12.58737 -12.38755 -12.17378 -11.88107 -11.70624 -11.63442 -11.48247 -11.18860 -11.12681 -11.08146 -11.01864 -10.70006 -10.48407 -10.30259 -10.06544 -9.75889 -9.00052 -8.55597 -8.43175 -6.93561 -6.27995 -4.00085 1.86191 2.68628 3.00727 3.30830 3.45828 3.53292 3.79206 4.16970 4.32183 4.37424 4.59899 4.74855 4.82214 4.98259 5.05653 5.09602 5.10839 5.17582 5.22714 5.28278 5.34077 5.45758 5.48919 5.55026 5.63318 5.69638 5.77010 5.84271 5.85700 5.92178 5.99891 6.05641 6.22267 6.25807 6.48232 6.64340 6.97091 6.99450 7.55899 7.95832 8.44685 9.18035 10.81537 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.037174 B = 0.002729 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.028514 B =10259.153890 C =10761.422602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.072 4.072 3 H 0.090 0.910 4 C 0.062 3.938 5 N -0.540 5.540 6 C 0.061 3.939 7 C -0.098 4.098 8 C -0.082 4.082 9 S -0.215 6.215 10 C -0.502 4.502 11 H 0.087 0.913 12 C 0.091 3.909 13 N -0.883 5.883 14 Si 0.862 3.138 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.238 1.238 18 C 0.052 3.948 19 C -0.107 4.107 20 C -0.077 4.077 21 H 0.105 0.895 22 C 0.484 3.516 23 O -0.510 6.510 24 O -0.517 6.517 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.270 0.730 37 H 0.090 0.910 38 H 0.036 0.964 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.965 3.311 -19.407 26.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.091 4.091 3 H 0.108 0.892 4 C -0.066 4.066 5 N -0.264 5.264 6 C -0.068 4.068 7 C -0.136 4.136 8 C -0.231 4.231 9 S 0.012 5.988 10 C -0.649 4.649 11 H 0.106 0.894 12 C -0.117 4.117 13 N -0.519 5.519 14 Si 0.687 3.313 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.162 1.162 18 C -0.076 4.076 19 C -0.145 4.145 20 C -0.096 4.096 21 H 0.123 0.877 22 C 0.327 3.673 23 O -0.398 6.398 24 O -0.328 6.328 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -16.997 4.288 -19.656 26.337 hybrid contribution -0.579 -0.899 0.303 1.111 sum -17.575 3.389 -19.353 26.361 Atomic orbital electron populations 1.22002 0.94319 1.01703 1.03510 1.21068 0.95855 1.00623 0.91522 0.89209 1.22140 0.87603 0.98900 0.98005 1.61913 1.07299 1.54547 1.02653 1.22153 0.96155 0.97386 0.91106 1.21351 0.93018 1.02287 0.96983 1.23015 0.98280 1.02568 0.99254 1.84155 1.04395 1.79036 1.31178 1.22128 0.97878 1.42595 1.02338 0.89449 1.24803 0.98171 0.94125 0.94617 1.69941 1.20911 1.42728 1.18369 0.86661 0.81692 0.79995 0.82940 1.19358 1.20152 1.16164 1.22163 1.01411 0.94704 0.89327 1.21609 0.91519 1.02997 0.98381 1.21234 0.98616 1.00314 0.89444 0.87704 1.23552 0.75927 0.83163 0.84674 1.90683 1.36792 1.25227 1.87109 1.84558 1.73513 1.57792 1.16987 0.93150 0.92131 0.90633 0.89977 0.94708 0.90545 0.94699 0.91541 0.90620 0.91414 0.91617 0.91990 0.89179 0.94531 0.90044 0.90313 0.73302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 8.91 37.16 0.33 -0.97 16 2 C -0.07 -0.64 2.02 -90.54 -0.18 -0.82 16 3 H 0.09 0.95 8.04 -51.93 -0.42 0.53 16 4 C 0.06 0.57 4.74 -3.84 -0.02 0.55 16 5 N -0.54 -5.89 4.66 -234.67 -1.09 -6.98 16 6 C 0.06 0.74 4.96 -3.82 -0.02 0.73 16 7 C -0.10 -1.46 5.15 -26.73 -0.14 -1.60 16 8 C -0.08 -1.56 5.67 37.16 0.21 -1.35 16 9 S -0.22 -5.23 19.41 -107.50 -2.09 -7.32 16 10 C -0.50 -14.56 10.04 30.94 0.31 -14.25 16 11 H 0.09 2.70 8.03 -52.48 -0.42 2.28 16 12 C 0.09 2.66 5.50 -17.43 -0.10 2.57 16 13 N -0.88 -26.83 13.97 55.49 0.78 -26.06 16 14 Si 0.86 21.57 27.74 -169.99 -4.71 16.85 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16 18 C 0.05 0.50 5.29 -3.83 -0.02 0.48 16 19 C -0.11 -0.90 5.31 -26.65 -0.14 -1.04 16 20 C -0.08 -0.63 2.20 -91.65 -0.20 -0.83 16 21 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 22 C 0.48 4.26 7.34 36.01 0.26 4.52 16 23 O -0.51 -5.81 14.60 -18.75 -0.27 -6.08 16 24 O -0.52 -3.40 13.36 -39.27 -0.52 -3.92 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.72 5.76 -51.93 -0.30 0.43 16 28 H 0.08 0.75 8.01 -51.93 -0.42 0.33 16 29 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.92 7.99 -51.93 -0.41 0.50 16 31 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 32 H 0.07 0.98 6.43 -51.93 -0.33 0.65 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 35 H 0.07 1.25 8.14 -51.91 -0.42 0.83 16 36 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.09 0.94 6.21 -51.93 -0.32 0.62 16 38 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.41 1.05 9.10 45.56 0.41 1.46 16 LS Contribution 339.24 15.07 5.11 5.11 Total: -1.00 -32.73 339.24 -8.52 -41.26 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.02 Total: -0.85 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 0.30 Total: -12.01 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: -0.32 Total: -33.04 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.80 Total: -10.01 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.85 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -2.09 Total: -7.32 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.73 -8.52 -41.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589401280.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.997 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds