Wall clock time and date at job start Tue Mar 31 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.53619 * 2 1 4 4 C 1.53034 * 109.50286 * 120.10162 * 2 1 3 5 5 N 1.46844 * 109.52178 * 179.12003 * 4 2 1 6 6 C 1.46903 * 111.00120 * 174.16054 * 5 4 2 7 7 C 1.53001 * 109.47302 * 189.99815 * 6 5 4 8 8 C 1.52996 * 109.46970 * 179.97438 * 7 6 5 9 9 S 1.81001 * 109.47170 * 179.97438 * 8 7 6 10 10 C 1.76195 * 100.00156 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00173 * 0.02562 * 10 9 8 12 12 C 1.38798 * 120.00027 * 180.02562 * 10 9 8 13 13 N 1.31628 * 119.99914 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99980 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46882 * 90.00382 * 14 12 10 16 16 H 1.48498 * 109.47570 * 209.99830 * 14 12 10 17 17 H 1.48496 * 109.47471 * 330.00346 * 14 12 10 18 18 C 1.46853 * 111.20063 * 298.25650 * 5 4 2 19 19 C 1.53036 * 109.51922 * 61.74207 * 18 5 4 20 20 C 1.53118 * 109.50187 * 239.90510 * 2 1 3 21 21 H 1.08996 * 109.52536 * 302.37563 * 20 2 1 22 22 C 1.50700 * 109.52394 * 62.50083 * 20 2 1 23 23 O 1.20826 * 120.00162 * 0.27431 * 22 20 2 24 24 O 1.34234 * 120.00068 * 179.97438 * 22 20 2 25 25 H 1.08993 * 109.47015 * 180.09127 * 1 2 3 26 26 H 1.08994 * 109.47092 * 300.09914 * 1 2 3 27 27 H 1.09002 * 109.46759 * 60.09651 * 1 2 3 28 28 H 1.08994 * 109.46113 * 299.13682 * 4 2 1 29 29 H 1.09003 * 109.46069 * 59.10518 * 4 2 1 30 30 H 1.08998 * 109.46772 * 310.00399 * 6 5 4 31 31 H 1.09005 * 109.46606 * 69.99949 * 6 5 4 32 32 H 1.08997 * 109.47195 * 299.99829 * 7 6 5 33 33 H 1.08996 * 109.46932 * 59.99960 * 7 6 5 34 34 H 1.08995 * 109.47655 * 300.00117 * 8 7 6 35 35 H 1.09010 * 109.47331 * 60.00148 * 8 7 6 36 36 H 0.97005 * 119.99752 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.46352 * 181.75583 * 18 5 4 38 38 H 1.08998 * 109.46199 * 301.74359 * 18 5 4 39 39 H 1.09002 * 109.50039 * 180.88254 * 19 18 5 40 40 H 1.09001 * 109.50401 * 60.76250 * 19 18 5 41 41 H 0.96706 * 116.99872 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0273 0.0000 4 6 2.0410 -0.7235 1.2480 5 7 3.5092 -0.7421 1.2378 6 6 4.0373 -1.3060 2.4873 7 6 5.5497 -1.0829 2.5485 8 6 6.0995 -1.6696 3.8501 9 16 7.8888 -1.4064 3.9222 10 6 8.2463 -2.1576 5.4754 11 1 7.4505 -2.5965 6.0589 12 6 9.5506 -2.1851 5.9491 13 7 9.8177 -2.7467 7.1092 14 14 10.9272 -1.4265 4.9397 15 1 11.0852 0.0021 5.3129 16 1 12.1952 -2.1513 5.2080 17 1 10.5955 -1.5271 3.4957 18 6 4.0230 -1.4730 0.0723 19 6 3.5712 -0.7719 -1.2108 20 6 2.0412 -0.7237 -1.2488 21 1 1.6443 -1.7386 -1.2697 22 6 1.5911 0.0185 -2.4807 23 8 0.9335 1.0262 -2.3723 24 8 1.9260 -0.4367 -3.6983 25 1 -0.3633 -1.0276 0.0016 26 1 -0.3633 0.5153 0.8890 27 1 -0.3633 0.5124 -0.8909 28 1 1.6905 -0.2024 2.1388 29 1 1.6648 -1.7465 1.2542 30 1 3.5628 -0.8145 3.3367 31 1 3.8259 -2.3748 2.5214 32 1 6.0241 -1.5745 1.6991 33 1 5.7610 -0.0142 2.5143 34 1 5.6251 -1.1778 4.6993 35 1 5.8881 -2.7385 3.8848 36 1 10.7293 -2.7656 7.4405 37 1 5.1121 -1.4962 0.1093 38 1 3.6373 -2.4924 0.0839 39 1 3.9395 -1.3234 -2.0759 40 1 3.9678 0.2433 -1.2298 41 1 1.6139 0.0730 -4.4586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589401280.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:29 Heat of formation + Delta-G solvation = -136.335724 kcal Electronic energy + Delta-G solvation = -20484.931522 eV Core-core repulsion = 17295.930509 eV Total energy + Delta-G solvation = -3189.001013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.72058 -39.83519 -37.24735 -36.25521 -34.67789 -33.45451 -32.97331 -28.25491 -28.02885 -27.56869 -24.90404 -23.43878 -22.84860 -21.50428 -20.63441 -19.59726 -18.99145 -17.85572 -17.11230 -16.89970 -16.69940 -16.35319 -16.04799 -15.71968 -15.14698 -14.92963 -14.92232 -14.68939 -14.11926 -13.84810 -13.56038 -13.40011 -13.36925 -13.01164 -12.93635 -12.75498 -12.61185 -12.46983 -12.32443 -12.02768 -11.92741 -11.86945 -11.63068 -11.55034 -11.28713 -11.15657 -11.01815 -10.53725 -9.25569 -8.97511 -8.51228 -6.22072 1.13898 1.20361 1.33139 1.48756 1.76300 2.13463 2.25719 2.69798 2.86950 2.90205 3.50892 3.69587 3.94247 3.97718 4.05940 4.22542 4.30352 4.39092 4.42008 4.42643 4.49138 4.60248 4.67851 4.70831 4.72224 4.82418 4.84170 4.88232 5.01270 5.11846 5.19787 5.21440 5.30256 5.32798 5.38170 5.68932 5.70541 6.10821 6.11042 6.18720 6.93094 7.01876 8.61909 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.037174 B = 0.002729 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.028514 B =10259.153890 C =10761.422602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.067 4.067 3 H 0.068 0.932 4 C 0.064 3.936 5 N -0.550 5.550 6 C 0.070 3.930 7 C -0.085 4.085 8 C -0.069 4.069 9 S -0.222 6.222 10 C -0.521 4.521 11 H 0.050 0.950 12 C 0.036 3.964 13 N -0.924 5.924 14 Si 0.926 3.074 15 H -0.262 1.262 16 H -0.263 1.263 17 H -0.228 1.228 18 C 0.050 3.950 19 C -0.100 4.100 20 C -0.076 4.076 21 H 0.123 0.877 22 C 0.489 3.511 23 O -0.542 6.542 24 O -0.512 6.512 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.276 0.724 37 H 0.082 0.918 38 H 0.046 0.954 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.387 3.314 -21.447 28.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.086 4.086 3 H 0.087 0.913 4 C -0.064 4.064 5 N -0.275 5.275 6 C -0.059 4.059 7 C -0.124 4.124 8 C -0.218 4.218 9 S 0.006 5.994 10 C -0.669 4.669 11 H 0.068 0.932 12 C -0.168 4.168 13 N -0.562 5.562 14 Si 0.747 3.253 15 H -0.187 1.187 16 H -0.188 1.188 17 H -0.151 1.151 18 C -0.077 4.077 19 C -0.138 4.138 20 C -0.095 4.095 21 H 0.140 0.860 22 C 0.333 3.667 23 O -0.432 6.432 24 O -0.326 6.326 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -17.429 4.284 -21.721 28.177 hybrid contribution -0.570 -0.927 0.916 1.423 sum -17.999 3.357 -20.805 27.714 Atomic orbital electron populations 1.21937 0.93743 1.02385 1.02952 1.20974 0.96245 0.99500 0.91910 0.91313 1.22144 0.86456 0.99566 0.98197 1.61863 1.08410 1.54868 1.02354 1.21964 0.93912 0.97906 0.92128 1.21231 0.95023 1.01503 0.94620 1.23081 0.94214 1.02944 1.01554 1.83855 1.09195 1.78445 1.27857 1.22353 0.97317 1.42762 1.04466 0.93155 1.25795 1.00785 0.94490 0.95743 1.70042 1.21965 1.44040 1.20127 0.85701 0.78602 0.79282 0.81684 1.18705 1.18803 1.15110 1.22200 1.00966 0.95263 0.89319 1.21539 0.91621 1.02331 0.98288 1.21239 0.98396 1.00963 0.88900 0.85960 1.23606 0.75192 0.82541 0.85374 1.90683 1.38321 1.26575 1.87612 1.84514 1.73114 1.57882 1.17055 0.91800 0.91872 0.92008 0.89922 0.93563 0.90293 0.94092 0.91002 0.91171 0.91693 0.91607 0.91427 0.89979 0.93542 0.88592 0.91559 0.71244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.91 71.98 0.64 -1.64 16 2 C -0.07 -1.10 2.02 -10.74 -0.02 -1.12 16 3 H 0.07 1.42 8.04 -2.38 -0.02 1.40 16 4 C 0.06 1.05 4.74 86.33 0.41 1.46 16 5 N -0.55 -10.92 4.66 -896.35 -4.17 -15.09 16 6 C 0.07 1.57 4.96 86.30 0.43 2.00 16 7 C -0.08 -2.40 5.15 30.59 0.16 -2.24 16 8 C -0.07 -2.57 5.67 71.98 0.41 -2.16 16 9 S -0.22 -10.61 19.41 -56.49 -1.10 -11.71 16 10 C -0.52 -30.81 10.04 67.95 0.68 -30.12 16 11 H 0.05 3.23 8.03 -2.91 -0.02 3.21 16 12 C 0.04 2.15 5.50 84.86 0.47 2.61 16 13 N -0.92 -57.08 13.97 21.65 0.30 -56.78 16 14 Si 0.93 44.21 27.74 68.60 1.90 46.11 16 15 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 17 H -0.23 -10.42 6.74 99.48 0.67 -9.75 16 18 C 0.05 0.86 5.29 86.32 0.46 1.32 16 19 C -0.10 -1.46 5.31 30.65 0.16 -1.30 16 20 C -0.08 -1.08 2.20 -11.46 -0.03 -1.10 16 21 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 22 C 0.49 7.79 7.34 71.24 0.52 8.32 16 23 O -0.54 -11.91 14.60 21.96 0.32 -11.59 16 24 O -0.51 -5.58 13.36 -51.46 -0.69 -6.27 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 1.13 5.76 -2.39 -0.01 1.12 16 28 H 0.08 1.35 8.01 -2.39 -0.02 1.33 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 1.74 7.99 -2.39 -0.02 1.72 16 31 H 0.04 0.88 8.12 -2.38 -0.02 0.86 16 32 H 0.07 1.97 6.43 -2.39 -0.02 1.96 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.06 2.46 8.14 -2.40 -0.02 2.44 16 35 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.28 15.73 8.31 -92.70 -0.77 14.96 16 37 H 0.08 1.54 6.21 -2.39 -0.01 1.53 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.43 1.29 9.10 -74.05 -0.67 0.61 16 Total: -1.00 -70.69 339.24 1.16 -69.53 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.30 Total: 9.77 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 4.29 Total: -23.98 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: -3.87 Total: -71.87 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.37 Total: -17.85 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.90 Total: 46.11 kcal Atomic # 16 Polarization: -10.61 SS G_CDS: -1.10 Total: -11.71 kcal Total: -70.69 1.16 -69.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589401280.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.803 kcal (2) G-P(sol) polarization free energy of solvation -70.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds