Wall clock time and date at job start Tue Mar 31 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47101 * 2 1 4 4 C 1.50697 * 109.47378 * 120.00032 * 2 1 3 5 5 O 1.20827 * 119.99841 * 96.37277 * 4 2 1 6 6 O 1.34224 * 120.00138 * 276.36922 * 4 2 1 7 7 N 1.46900 * 109.47055 * 240.00137 * 2 1 3 8 8 C 1.46906 * 110.99893 * 61.83893 * 7 2 1 9 9 C 1.53005 * 109.47122 * 194.94880 * 8 7 2 10 10 C 1.52997 * 109.47051 * 175.27783 * 9 8 7 11 11 S 1.80996 * 109.47095 * 180.02562 * 10 9 8 12 12 C 1.76203 * 99.99904 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00388 * 0.02562 * 12 11 10 14 14 C 1.38805 * 119.99885 * 180.02562 * 12 11 10 15 15 N 1.31631 * 119.99961 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99908 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47350 * 89.99509 * 16 14 12 18 18 H 1.48500 * 109.47069 * 209.99804 * 16 14 12 19 19 H 1.48497 * 109.46948 * 329.99479 * 16 14 12 20 20 C 1.46893 * 111.00462 * 185.79299 * 7 2 1 21 21 C 1.53779 * 113.61967 * 253.64239 * 20 7 2 22 22 C 1.53774 * 87.08201 * 220.01494 * 21 20 7 23 23 C 1.53775 * 87.08116 * 25.43325 * 22 21 20 24 24 H 1.08999 * 109.47588 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47290 * 299.99797 * 1 2 3 26 26 H 1.09006 * 109.47812 * 59.99768 * 1 2 3 27 27 H 0.96697 * 117.00159 * 179.97438 * 6 4 2 28 28 H 1.08992 * 109.47539 * 314.95188 * 8 7 2 29 29 H 1.09004 * 109.47099 * 74.95185 * 8 7 2 30 30 H 1.09004 * 109.47051 * 295.27466 * 9 8 7 31 31 H 1.08993 * 109.46879 * 55.27722 * 9 8 7 32 32 H 1.08998 * 109.47188 * 300.00145 * 10 9 8 33 33 H 1.09006 * 109.47273 * 59.99568 * 10 9 8 34 34 H 0.96993 * 119.99960 * 180.02562 * 15 14 12 35 35 H 1.09012 * 112.84635 * 24.94832 * 20 7 2 36 36 H 1.08996 * 113.61562 * 334.56742 * 21 20 7 37 37 H 1.09006 * 113.61796 * 105.46362 * 21 20 7 38 38 H 1.08997 * 113.61707 * 270.87947 * 22 21 20 39 39 H 1.09008 * 113.61142 * 139.98160 * 22 21 20 40 40 H 1.09008 * 113.61394 * 220.01718 * 23 22 21 41 41 H 1.08998 * 113.69408 * 89.12873 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3432 -1.8764 1.1701 6 8 2.1345 -0.0478 2.3932 7 7 2.0196 -0.6925 -1.1995 8 6 1.5848 -0.0013 -2.4207 9 6 1.7805 -0.9236 -3.6258 10 6 1.2196 -0.2500 -4.8798 11 16 1.4504 -1.3412 -6.3052 12 6 0.7372 -0.3452 -7.5717 13 1 0.3311 0.6261 -7.3306 14 6 0.6973 -0.8089 -8.8794 15 7 1.1926 -1.9924 -9.1735 16 14 -0.0582 0.2474 -10.2222 17 1 0.9909 1.1099 -10.8227 18 1 -0.6402 -0.6275 -11.2715 19 1 -1.1259 1.0994 -9.6399 20 6 3.4814 -0.8332 -1.1663 21 6 4.2132 0.1096 -2.1360 22 6 5.1585 -1.0645 -2.4401 23 6 4.0080 -1.9960 -2.0238 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3635 0.5139 -0.8900 27 1 2.4613 -0.5457 3.1550 28 1 0.5311 0.2632 -2.3330 29 1 2.1766 0.9040 -2.5561 30 1 2.8437 -1.1204 -3.7638 31 1 1.2563 -1.8634 -3.4529 32 1 0.1565 -0.0530 -4.7418 33 1 1.7438 0.6900 -5.0527 34 1 1.1651 -2.3163 -10.0874 35 1 3.8851 -0.8195 -0.1538 36 1 3.6074 0.4146 -2.9892 37 1 4.7038 0.9487 -1.6425 38 1 6.0218 -1.1133 -1.7764 39 1 5.4278 -1.1469 -3.4931 40 1 4.3329 -2.8571 -1.4396 41 1 3.3453 -2.2677 -2.8454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589486248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:28 Heat of formation + Delta-G solvation = -57.913920 kcal Electronic energy + Delta-G solvation = -21202.907320 eV Core-core repulsion = 18017.306931 eV Total energy + Delta-G solvation = -3185.600388 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01189 -39.59284 -36.39498 -35.71663 -33.37551 -32.40983 -30.24519 -26.79699 -25.69043 -25.48002 -24.54498 -23.64525 -21.08723 -20.41652 -19.23835 -18.31930 -17.47538 -17.01231 -16.56009 -16.10377 -15.22183 -14.83284 -14.78996 -14.38857 -14.07476 -13.81250 -13.24172 -12.99062 -12.84061 -12.73783 -12.49327 -12.17928 -11.96959 -11.75038 -11.69574 -11.58839 -11.20925 -11.05029 -10.89769 -10.70482 -10.53771 -10.49876 -10.42756 -10.23456 -9.84998 -9.53508 -9.04398 -8.33746 -8.27211 -6.50465 -6.21290 -3.91171 1.99172 2.63526 3.22227 3.23127 3.29870 3.53136 3.77039 4.24002 4.57938 4.66771 4.74023 4.83886 4.90212 4.96718 5.03440 5.14316 5.15204 5.33265 5.36199 5.43085 5.53621 5.63081 5.72679 5.74431 5.81065 5.88531 5.92304 6.01309 6.08518 6.14007 6.22594 6.26403 6.32587 6.51363 6.62526 6.79128 6.96879 7.00415 7.61800 7.70788 8.37895 9.25007 10.86817 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.027993 B = 0.003486 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.009311 B = 8030.368728 C = 8565.972090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.093 3.907 3 H 0.073 0.927 4 C 0.478 3.522 5 O -0.489 6.489 6 O -0.521 6.521 7 N -0.509 5.509 8 C 0.051 3.949 9 C -0.105 4.105 10 C -0.114 4.114 11 S -0.129 6.129 12 C -0.517 4.517 13 H 0.072 0.928 14 C 0.071 3.929 15 N -0.869 5.869 16 Si 0.917 3.083 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.062 3.938 21 C -0.184 4.184 22 C -0.142 4.142 23 C -0.134 4.134 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.409 0.591 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.267 0.733 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 5.564 20.704 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.017 4.017 3 H 0.090 0.910 4 C 0.318 3.682 5 O -0.374 6.374 6 O -0.333 6.333 7 N -0.233 5.233 8 C -0.077 4.077 9 C -0.144 4.144 10 C -0.263 4.263 11 S 0.099 5.901 12 C -0.665 4.665 13 H 0.090 0.910 14 C -0.138 4.138 15 N -0.505 5.505 16 Si 0.744 3.256 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.046 4.046 21 C -0.222 4.222 22 C -0.180 4.180 23 C -0.172 4.172 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.268 0.732 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.337 3.808 20.148 20.775 hybrid contribution -0.396 2.321 -0.195 2.362 sum 2.940 6.129 19.953 21.079 Atomic orbital electron populations 1.21883 0.90895 1.04131 1.03338 1.21165 0.97773 0.96119 0.86603 0.90977 1.23356 0.74532 0.85913 0.84369 1.90757 1.44307 1.17351 1.85019 1.84535 1.79759 1.48341 1.20700 1.61988 1.11316 1.49906 1.00119 1.22481 1.00746 0.96000 0.88441 1.21673 1.02646 0.98937 0.91109 1.23252 1.02126 1.02230 0.98687 1.84651 1.79964 1.26567 0.98928 1.22694 1.44829 1.05047 0.93915 0.91021 1.25008 0.95292 0.95421 0.98047 1.70020 1.43234 1.17300 1.19934 0.86182 0.79240 0.79702 0.80506 1.20316 1.20780 1.19704 1.23284 0.85442 0.97717 0.98174 1.23868 0.99462 0.97402 1.01514 1.22691 0.96705 0.96574 1.02007 1.23352 0.97189 0.96452 1.00206 0.90715 0.91267 0.90141 0.73247 0.90198 0.93329 0.90024 0.90490 0.92192 0.92406 0.92327 0.89482 0.87529 0.92171 0.90778 0.90641 0.91698 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.04 37.15 0.34 -0.97 16 2 C 0.09 0.97 2.58 -68.87 -0.18 0.79 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.48 5.21 6.18 36.00 0.22 5.43 16 5 O -0.49 -6.92 16.14 -18.75 -0.30 -7.22 16 6 O -0.52 -4.11 13.42 -39.24 -0.53 -4.63 16 7 N -0.51 -6.37 4.20 -219.14 -0.92 -7.29 16 8 C 0.05 0.65 4.37 -3.82 -0.02 0.64 16 9 C -0.11 -1.68 3.57 -26.73 -0.10 -1.78 16 10 C -0.11 -2.22 5.67 37.16 0.21 -2.01 16 11 S -0.13 -3.35 21.44 -107.50 -2.30 -5.65 16 12 C -0.52 -14.72 9.50 30.94 0.29 -14.43 16 13 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 14 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 15 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 16 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 C 0.06 0.78 3.21 -66.91 -0.21 0.56 16 21 C -0.18 -2.17 6.45 -25.92 -0.17 -2.34 16 22 C -0.14 -1.69 7.90 -25.93 -0.20 -1.89 16 23 C -0.13 -1.79 7.27 -25.92 -0.19 -1.97 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.69 6.16 -51.93 -0.32 0.37 16 27 H 0.41 1.53 9.10 45.56 0.41 1.95 16 28 H 0.08 0.95 5.74 -51.93 -0.30 0.65 16 29 H 0.05 0.59 5.80 -51.93 -0.30 0.29 16 30 H 0.08 1.32 4.07 -51.93 -0.21 1.11 16 31 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 32 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 33 H 0.06 1.11 8.14 -51.91 -0.42 0.69 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.09 1.09 6.11 -51.92 -0.32 0.78 16 36 H 0.11 1.38 4.27 -51.93 -0.22 1.16 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 40 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 41 H 0.11 1.58 4.94 -51.93 -0.26 1.33 16 LS Contribution 334.24 15.07 5.04 5.04 Total: -1.00 -32.97 334.24 -8.69 -41.65 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.28 Total: 2.92 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -0.10 Total: -16.05 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: -0.19 Total: -32.51 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.83 Total: -11.85 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -3.35 SS G_CDS: -2.30 Total: -5.65 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.97 -8.69 -41.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589486248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.259 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds