Wall clock time and date at job start Tue Mar 31 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47101 * 2 1 4 4 C 1.50697 * 109.47378 * 120.00032 * 2 1 3 5 5 O 1.20827 * 119.99841 * 96.37277 * 4 2 1 6 6 O 1.34224 * 120.00138 * 276.36922 * 4 2 1 7 7 N 1.46900 * 109.47055 * 240.00137 * 2 1 3 8 8 C 1.46906 * 110.99893 * 61.83893 * 7 2 1 9 9 C 1.53005 * 109.47122 * 194.94880 * 8 7 2 10 10 C 1.52997 * 109.47051 * 175.27783 * 9 8 7 11 11 S 1.80996 * 109.47095 * 180.02562 * 10 9 8 12 12 C 1.76203 * 99.99904 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00388 * 0.02562 * 12 11 10 14 14 C 1.38805 * 119.99885 * 180.02562 * 12 11 10 15 15 N 1.31631 * 119.99961 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99908 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47350 * 89.99509 * 16 14 12 18 18 H 1.48500 * 109.47069 * 209.99804 * 16 14 12 19 19 H 1.48497 * 109.46948 * 329.99479 * 16 14 12 20 20 C 1.46893 * 111.00462 * 185.79299 * 7 2 1 21 21 C 1.53779 * 113.61967 * 253.64239 * 20 7 2 22 22 C 1.53774 * 87.08201 * 220.01494 * 21 20 7 23 23 C 1.53775 * 87.08116 * 25.43325 * 22 21 20 24 24 H 1.08999 * 109.47588 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47290 * 299.99797 * 1 2 3 26 26 H 1.09006 * 109.47812 * 59.99768 * 1 2 3 27 27 H 0.96697 * 117.00159 * 179.97438 * 6 4 2 28 28 H 1.08992 * 109.47539 * 314.95188 * 8 7 2 29 29 H 1.09004 * 109.47099 * 74.95185 * 8 7 2 30 30 H 1.09004 * 109.47051 * 295.27466 * 9 8 7 31 31 H 1.08993 * 109.46879 * 55.27722 * 9 8 7 32 32 H 1.08998 * 109.47188 * 300.00145 * 10 9 8 33 33 H 1.09006 * 109.47273 * 59.99568 * 10 9 8 34 34 H 0.96993 * 119.99960 * 180.02562 * 15 14 12 35 35 H 1.09012 * 112.84635 * 24.94832 * 20 7 2 36 36 H 1.08996 * 113.61562 * 334.56742 * 21 20 7 37 37 H 1.09006 * 113.61796 * 105.46362 * 21 20 7 38 38 H 1.08997 * 113.61707 * 270.87947 * 22 21 20 39 39 H 1.09008 * 113.61142 * 139.98160 * 22 21 20 40 40 H 1.09008 * 113.61394 * 220.01718 * 23 22 21 41 41 H 1.08998 * 113.69408 * 89.12873 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3432 -1.8764 1.1701 6 8 2.1345 -0.0478 2.3932 7 7 2.0196 -0.6925 -1.1995 8 6 1.5848 -0.0013 -2.4207 9 6 1.7805 -0.9236 -3.6258 10 6 1.2196 -0.2500 -4.8798 11 16 1.4504 -1.3412 -6.3052 12 6 0.7372 -0.3452 -7.5717 13 1 0.3311 0.6261 -7.3306 14 6 0.6973 -0.8089 -8.8794 15 7 1.1926 -1.9924 -9.1735 16 14 -0.0582 0.2474 -10.2222 17 1 0.9909 1.1099 -10.8227 18 1 -0.6402 -0.6275 -11.2715 19 1 -1.1259 1.0994 -9.6399 20 6 3.4814 -0.8332 -1.1663 21 6 4.2132 0.1096 -2.1360 22 6 5.1585 -1.0645 -2.4401 23 6 4.0080 -1.9960 -2.0238 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3635 0.5139 -0.8900 27 1 2.4613 -0.5457 3.1550 28 1 0.5311 0.2632 -2.3330 29 1 2.1766 0.9040 -2.5561 30 1 2.8437 -1.1204 -3.7638 31 1 1.2563 -1.8634 -3.4529 32 1 0.1565 -0.0530 -4.7418 33 1 1.7438 0.6900 -5.0527 34 1 1.1651 -2.3163 -10.0874 35 1 3.8851 -0.8195 -0.1538 36 1 3.6074 0.4146 -2.9892 37 1 4.7038 0.9487 -1.6425 38 1 6.0218 -1.1133 -1.7764 39 1 5.4278 -1.1469 -3.4931 40 1 4.3329 -2.8571 -1.4396 41 1 3.3453 -2.2677 -2.8454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589486248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:27 Heat of formation + Delta-G solvation = -79.781123 kcal Electronic energy + Delta-G solvation = -21203.855553 eV Core-core repulsion = 18017.306931 eV Total energy + Delta-G solvation = -3186.548621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.90307 -40.50726 -37.16966 -36.65696 -34.68726 -34.50547 -31.18665 -28.09353 -27.51035 -26.61062 -25.45575 -24.73547 -22.27740 -21.28935 -20.28357 -19.49155 -19.11164 -17.99570 -17.43037 -16.99243 -16.87137 -16.30293 -15.98795 -15.77990 -15.28172 -14.98353 -14.51671 -14.26391 -13.93702 -13.73690 -13.43868 -13.27878 -13.17887 -13.00873 -12.95090 -12.80421 -12.67998 -12.45144 -12.38748 -12.29595 -11.67517 -11.59281 -11.37666 -11.30985 -11.21454 -11.12382 -10.96655 -10.25613 -9.26690 -8.62486 -8.34619 -6.10103 1.17103 1.33080 1.40735 1.50188 1.74319 1.96111 2.31502 2.79782 2.99657 3.35861 3.64357 3.70867 3.90647 3.91793 4.00739 4.07466 4.11689 4.21234 4.25753 4.41151 4.51593 4.59262 4.64719 4.75274 4.76471 4.83530 4.88800 4.94791 5.04432 5.08431 5.18174 5.24032 5.29930 5.34168 5.42418 5.53799 5.60989 6.00139 6.04935 6.20747 7.01558 7.07714 8.74654 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.027993 B = 0.003486 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.009311 B = 8030.368728 C = 8565.972090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.089 3.911 3 H 0.094 0.906 4 C 0.485 3.515 5 O -0.529 6.529 6 O -0.511 6.511 7 N -0.524 5.524 8 C 0.061 3.939 9 C -0.093 4.093 10 C -0.087 4.087 11 S -0.199 6.199 12 C -0.536 4.536 13 H 0.074 0.926 14 C 0.014 3.986 15 N -0.908 5.908 16 Si 0.993 3.007 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.262 1.262 20 C 0.068 3.932 21 C -0.177 4.177 22 C -0.138 4.138 23 C -0.144 4.144 24 H 0.057 0.943 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.428 0.572 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.270 0.730 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 7.942 21.874 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 H 0.111 0.889 4 C 0.327 3.673 5 O -0.418 6.418 6 O -0.324 6.324 7 N -0.249 5.249 8 C -0.067 4.067 9 C -0.132 4.132 10 C -0.236 4.236 11 S 0.030 5.970 12 C -0.684 4.684 13 H 0.092 0.908 14 C -0.190 4.190 15 N -0.545 5.545 16 Si 0.815 3.185 17 H -0.193 1.193 18 H -0.201 1.201 19 H -0.186 1.186 20 C -0.040 4.040 21 C -0.215 4.215 22 C -0.175 4.175 23 C -0.182 4.182 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.290 0.710 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.932 6.202 21.358 22.432 hybrid contribution -0.245 1.560 -0.404 1.629 sum 2.687 7.761 20.954 22.506 Atomic orbital electron populations 1.21889 0.89858 1.03483 1.04708 1.21292 0.98568 0.96688 0.85453 0.88879 1.23410 0.73514 0.85255 0.85129 1.90754 1.46263 1.19027 1.85730 1.84485 1.79239 1.48069 1.20640 1.61833 1.11371 1.50870 1.00836 1.22298 1.01907 0.95265 0.87193 1.21544 1.01880 0.98664 0.91066 1.23159 1.02687 1.00985 0.96773 1.84716 1.80297 1.29763 1.02260 1.23053 1.45069 1.05319 0.94951 0.90796 1.26063 0.95554 0.96746 1.00674 1.70163 1.44474 1.19202 1.20664 0.85028 0.78586 0.77874 0.77005 1.19317 1.20147 1.18576 1.23201 0.85642 0.97070 0.98092 1.23777 0.99060 0.97737 1.00942 1.22697 0.96910 0.96197 1.01740 1.23339 0.97862 0.97110 0.99892 0.92347 0.89181 0.89498 0.71029 0.88890 0.91931 0.90368 0.92185 0.91784 0.91665 0.92075 0.89243 0.88611 0.90304 0.89087 0.91674 0.92248 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.04 71.98 0.65 -1.57 16 2 C 0.09 1.64 2.58 44.17 0.11 1.75 16 3 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.48 9.60 6.18 71.23 0.44 10.04 16 5 O -0.53 -14.51 16.14 21.96 0.35 -14.16 16 6 O -0.51 -6.60 13.42 -51.36 -0.69 -7.28 16 7 N -0.52 -12.37 4.20 -847.21 -3.56 -15.93 16 8 C 0.06 1.46 4.37 86.30 0.38 1.84 16 9 C -0.09 -2.96 3.57 30.59 0.11 -2.85 16 10 C -0.09 -3.37 5.67 71.98 0.41 -2.96 16 11 S -0.20 -10.57 21.44 -56.49 -1.21 -11.78 16 12 C -0.54 -30.82 9.50 67.96 0.65 -30.18 16 13 H 0.07 4.06 7.80 -2.91 -0.02 4.04 16 14 C 0.01 0.82 5.49 84.86 0.47 1.29 16 15 N -0.91 -55.16 13.22 21.65 0.29 -54.87 16 16 Si 0.99 43.84 29.55 68.60 2.03 45.86 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 18 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 20 C 0.07 1.62 3.21 45.44 0.15 1.76 16 21 C -0.18 -3.86 6.45 31.12 0.20 -3.66 16 22 C -0.14 -3.18 7.90 31.12 0.25 -2.93 16 23 C -0.14 -3.87 7.27 31.12 0.23 -3.64 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.09 1.24 6.16 -2.38 -0.01 1.23 16 27 H 0.43 2.07 9.10 -74.06 -0.67 1.40 16 28 H 0.09 1.98 5.74 -2.39 -0.01 1.97 16 29 H 0.06 1.35 5.80 -2.39 -0.01 1.33 16 30 H 0.08 2.56 4.07 -2.39 -0.01 2.55 16 31 H 0.06 2.11 8.13 -2.39 -0.02 2.09 16 32 H 0.06 2.43 8.14 -2.40 -0.02 2.41 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.09 2.10 6.11 -2.38 -0.01 2.08 16 36 H 0.10 2.32 4.27 -2.39 -0.01 2.31 16 37 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.09 2.65 4.94 -2.39 -0.01 2.64 16 Total: -1.00 -72.12 334.24 1.61 -70.51 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.37 Total: 18.75 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 4.03 Total: -31.09 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -3.28 Total: -70.81 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.34 Total: -21.44 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -10.57 SS G_CDS: -1.21 Total: -11.78 kcal Total: -72.12 1.61 -70.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589486248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.269 kcal (2) G-P(sol) polarization free energy of solvation -72.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds