Wall clock time and date at job start Tue Mar 31 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47042 * 2 1 4 4 C 1.50701 * 109.47162 * 240.00059 * 2 1 3 5 5 O 1.20822 * 119.99815 * 269.72927 * 4 2 1 6 6 O 1.34223 * 119.99962 * 89.72906 * 4 2 1 7 7 N 1.46903 * 109.46936 * 119.99996 * 2 1 3 8 8 C 1.46901 * 111.00154 * 313.80600 * 7 2 1 9 9 C 1.53005 * 109.46807 * 299.22627 * 8 7 2 10 10 C 1.53001 * 109.47003 * 175.78333 * 9 8 7 11 11 S 1.80996 * 109.47272 * 179.97438 * 10 9 8 12 12 C 1.76197 * 100.00073 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00342 * 359.97438 * 12 11 10 14 14 C 1.38800 * 119.99590 * 179.97438 * 12 11 10 15 15 N 1.31625 * 120.00807 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99695 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47115 * 89.99892 * 16 14 12 18 18 H 1.48497 * 109.47246 * 210.00375 * 16 14 12 19 19 H 1.48503 * 109.47174 * 330.00073 * 16 14 12 20 20 C 1.46902 * 110.99896 * 189.85148 * 7 2 1 21 21 C 1.53780 * 113.61043 * 277.49794 * 20 7 2 22 22 C 1.53786 * 87.08145 * 220.02036 * 21 20 7 23 23 C 1.53776 * 87.07792 * 25.43146 * 22 21 20 24 24 H 1.09005 * 109.46806 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46972 * 299.99890 * 1 2 3 26 26 H 1.08995 * 109.47061 * 60.00327 * 1 2 3 27 27 H 0.96701 * 117.00447 * 179.97438 * 6 4 2 28 28 H 1.09000 * 109.47270 * 59.22284 * 8 7 2 29 29 H 1.08995 * 109.46856 * 179.23234 * 8 7 2 30 30 H 1.08999 * 109.47100 * 295.78560 * 9 8 7 31 31 H 1.09001 * 109.47122 * 55.78952 * 9 8 7 32 32 H 1.08999 * 109.47452 * 300.00841 * 10 9 8 33 33 H 1.09001 * 109.46675 * 60.00346 * 10 9 8 34 34 H 0.96993 * 120.00683 * 179.97438 * 15 14 12 35 35 H 1.08998 * 112.84919 * 48.80188 * 20 7 2 36 36 H 1.09005 * 113.61856 * 334.56798 * 21 20 7 37 37 H 1.09004 * 113.61871 * 105.47143 * 21 20 7 38 38 H 1.09005 * 113.61322 * 270.88720 * 22 21 20 39 39 H 1.08994 * 113.61734 * 139.98252 * 22 21 20 40 40 H 1.09001 * 113.61940 * 220.02143 * 23 22 21 41 41 H 1.09000 * 113.69035 * 89.13395 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.2384 -1.9005 -1.1991 6 8 2.2509 -0.0210 -2.3612 7 7 2.0197 -0.6925 1.1995 8 6 1.3001 -0.2418 2.3982 9 6 1.5230 1.2594 2.5925 10 6 0.6901 1.7494 3.7787 11 16 0.9543 3.5251 4.0090 12 6 -0.0919 3.8126 5.3973 13 1 -0.6494 2.9960 5.8316 14 6 -0.1994 5.0887 5.9327 15 7 0.4796 6.0841 5.4031 16 14 -1.3081 5.3934 7.4050 17 1 -0.5322 5.2028 8.6567 18 1 -1.8298 6.7827 7.3526 19 1 -2.4436 4.4368 7.3760 20 6 3.4691 -0.5123 1.3566 21 6 4.3061 -1.4874 0.5120 22 6 5.2497 -1.6011 1.7210 23 6 4.0463 -1.2146 2.5969 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.5734 -0.5199 -3.1242 28 1 0.2347 -0.4383 2.2779 29 1 1.6729 -0.7801 3.2696 30 1 2.5788 1.4478 2.7873 31 1 1.2193 1.7915 1.6909 32 1 -0.3656 1.5609 3.5840 33 1 0.9939 1.2173 4.6802 34 1 0.4042 6.9759 5.7770 35 1 3.7791 0.5282 1.2600 36 1 3.7870 -2.4160 0.2744 37 1 4.7678 -1.0244 -0.3602 38 1 6.0478 -0.8586 1.7234 39 1 5.6118 -2.6137 1.8987 40 1 4.2980 -0.5313 3.4079 41 1 3.4554 -2.0677 2.9303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589486250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:30 Heat of formation + Delta-G solvation = -75.788738 kcal Electronic energy + Delta-G solvation = -21206.933387 eV Core-core repulsion = 18020.557888 eV Total energy + Delta-G solvation = -3186.375499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.80399 -39.18473 -36.63383 -36.08125 -32.80955 -32.43482 -30.29399 -26.89241 -25.63165 -25.31670 -24.54595 -23.41896 -21.81767 -20.15126 -18.88257 -18.27569 -17.50736 -17.14766 -16.13509 -15.90051 -15.63346 -14.86630 -14.80748 -14.49949 -13.96106 -13.73553 -13.29253 -13.18861 -12.70377 -12.54824 -12.29931 -12.22015 -11.96886 -11.79603 -11.62824 -11.52710 -11.37405 -11.07903 -10.93873 -10.79426 -10.70397 -10.49189 -10.42472 -10.22611 -10.19714 -9.73497 -9.07855 -8.43619 -8.22704 -6.55940 -6.24856 -3.95543 2.14020 2.79423 3.20332 3.21066 3.27863 3.55525 3.83827 4.20440 4.45749 4.65330 4.78706 4.83866 4.91583 4.96009 5.11157 5.12419 5.20580 5.26585 5.40409 5.50632 5.55306 5.61450 5.64625 5.71169 5.80323 5.81045 5.90411 5.93983 5.96125 6.06322 6.19705 6.27383 6.31004 6.43098 6.49471 6.67784 6.87302 7.02116 7.58648 7.86863 8.34653 9.21677 10.83334 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.024266 B = 0.003567 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.593172 B = 7848.146353 C = 8401.976595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.091 3.909 3 H 0.079 0.921 4 C 0.482 3.518 5 O -0.493 6.493 6 O -0.520 6.520 7 N -0.507 5.507 8 C 0.055 3.945 9 C -0.136 4.136 10 C -0.109 4.109 11 S -0.136 6.136 12 C -0.516 4.516 13 H 0.072 0.928 14 C 0.071 3.929 15 N -0.870 5.870 16 Si 0.918 3.082 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.045 3.955 21 C -0.128 4.128 22 C -0.144 4.144 23 C -0.125 4.125 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.407 0.593 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.267 0.733 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.970 -14.108 -11.984 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 H 0.097 0.903 4 C 0.323 3.677 5 O -0.378 6.378 6 O -0.332 6.332 7 N -0.232 5.232 8 C -0.073 4.073 9 C -0.176 4.176 10 C -0.258 4.258 11 S 0.092 5.908 12 C -0.664 4.664 13 H 0.091 0.909 14 C -0.137 4.137 15 N -0.506 5.506 16 Si 0.744 3.256 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.063 4.063 21 C -0.166 4.166 22 C -0.182 4.182 23 C -0.163 4.163 24 H 0.090 0.910 25 H 0.105 0.895 26 H 0.088 0.912 27 H 0.265 0.735 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.476 -13.808 -12.276 19.270 hybrid contribution -1.031 0.077 1.198 1.582 sum 4.446 -13.731 -11.078 18.194 Atomic orbital electron populations 1.21974 0.90963 1.03696 1.04155 1.21113 0.97381 0.96462 0.86911 0.90326 1.23356 0.74000 0.86222 0.84170 1.90661 1.46781 1.16457 1.83912 1.84562 1.79274 1.46662 1.22696 1.62302 1.03783 1.55734 1.01340 1.22407 0.99297 0.94076 0.91510 1.21995 1.00930 0.95879 0.98801 1.23172 1.01115 1.02326 0.99187 1.84630 1.62616 1.00697 1.42876 1.22682 1.30442 0.97296 1.15996 0.90946 1.25008 0.96032 0.95097 0.97586 1.70015 1.39767 1.00662 1.40127 0.86176 0.80193 0.77697 0.81535 1.20268 1.20760 1.19657 1.23328 0.86536 0.97842 0.98603 1.23158 0.96558 1.00880 0.95956 1.22743 0.96602 1.01654 0.97173 1.22933 0.96741 1.00688 0.95952 0.91030 0.89531 0.91164 0.73506 0.89837 0.89860 0.91439 0.91485 0.92100 0.92065 0.92307 0.91108 0.87928 0.92832 0.90425 0.91274 0.91189 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.30 37.16 0.31 -1.28 16 2 C 0.09 1.06 1.91 -68.86 -0.13 0.93 16 3 H 0.08 0.94 6.89 -51.93 -0.36 0.59 16 4 C 0.48 5.60 6.29 36.01 0.23 5.83 16 5 O -0.49 -6.77 14.79 -18.75 -0.28 -7.04 16 6 O -0.52 -4.81 13.42 -39.24 -0.53 -5.33 16 7 N -0.51 -6.20 4.29 -219.13 -0.94 -7.14 16 8 C 0.06 0.70 4.58 -3.82 -0.02 0.68 16 9 C -0.14 -2.06 4.30 -26.73 -0.12 -2.18 16 10 C -0.11 -2.09 5.67 37.16 0.21 -1.88 16 11 S -0.14 -3.49 21.44 -107.50 -2.30 -5.79 16 12 C -0.52 -14.61 9.50 30.94 0.29 -14.32 16 13 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 14 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 15 N -0.87 -25.81 13.22 55.49 0.73 -25.07 16 16 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C 0.05 0.53 2.27 -66.90 -0.15 0.38 16 21 C -0.13 -1.45 5.71 -25.92 -0.15 -1.60 16 22 C -0.14 -1.44 8.08 -25.92 -0.21 -1.65 16 23 C -0.13 -1.38 6.55 -25.92 -0.17 -1.55 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.09 0.95 5.63 -51.93 -0.29 0.66 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.41 1.98 9.10 45.56 0.41 2.39 16 28 H 0.08 1.00 6.15 -51.93 -0.32 0.68 16 29 H 0.08 1.03 6.93 -51.93 -0.36 0.67 16 30 H 0.07 1.07 7.09 -51.93 -0.37 0.70 16 31 H 0.07 1.02 5.99 -51.93 -0.31 0.71 16 32 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 33 H 0.06 1.17 8.14 -51.91 -0.42 0.75 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.07 0.89 7.40 -51.93 -0.38 0.50 16 36 H 0.10 1.34 6.68 -51.93 -0.35 0.99 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.99 7.89 -51.93 -0.41 0.58 16 LS Contribution 337.73 15.07 5.09 5.09 Total: -1.00 -32.30 337.73 -8.91 -41.21 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.66 Total: 2.47 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 0.00 Total: -14.70 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: -0.21 Total: -32.21 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.80 Total: -12.38 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -2.30 Total: -5.79 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.30 -8.91 -41.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589486250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.581 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds