Wall clock time and date at job start Tue Mar 31 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47042 * 2 1 4 4 C 1.50701 * 109.47162 * 240.00059 * 2 1 3 5 5 O 1.20822 * 119.99815 * 269.72927 * 4 2 1 6 6 O 1.34223 * 119.99962 * 89.72906 * 4 2 1 7 7 N 1.46903 * 109.46936 * 119.99996 * 2 1 3 8 8 C 1.46901 * 111.00154 * 313.80600 * 7 2 1 9 9 C 1.53005 * 109.46807 * 299.22627 * 8 7 2 10 10 C 1.53001 * 109.47003 * 175.78333 * 9 8 7 11 11 S 1.80996 * 109.47272 * 179.97438 * 10 9 8 12 12 C 1.76197 * 100.00073 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00342 * 359.97438 * 12 11 10 14 14 C 1.38800 * 119.99590 * 179.97438 * 12 11 10 15 15 N 1.31625 * 120.00807 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99695 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47115 * 89.99892 * 16 14 12 18 18 H 1.48497 * 109.47246 * 210.00375 * 16 14 12 19 19 H 1.48503 * 109.47174 * 330.00073 * 16 14 12 20 20 C 1.46902 * 110.99896 * 189.85148 * 7 2 1 21 21 C 1.53780 * 113.61043 * 277.49794 * 20 7 2 22 22 C 1.53786 * 87.08145 * 220.02036 * 21 20 7 23 23 C 1.53776 * 87.07792 * 25.43146 * 22 21 20 24 24 H 1.09005 * 109.46806 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46972 * 299.99890 * 1 2 3 26 26 H 1.08995 * 109.47061 * 60.00327 * 1 2 3 27 27 H 0.96701 * 117.00447 * 179.97438 * 6 4 2 28 28 H 1.09000 * 109.47270 * 59.22284 * 8 7 2 29 29 H 1.08995 * 109.46856 * 179.23234 * 8 7 2 30 30 H 1.08999 * 109.47100 * 295.78560 * 9 8 7 31 31 H 1.09001 * 109.47122 * 55.78952 * 9 8 7 32 32 H 1.08999 * 109.47452 * 300.00841 * 10 9 8 33 33 H 1.09001 * 109.46675 * 60.00346 * 10 9 8 34 34 H 0.96993 * 120.00683 * 179.97438 * 15 14 12 35 35 H 1.08998 * 112.84919 * 48.80188 * 20 7 2 36 36 H 1.09005 * 113.61856 * 334.56798 * 21 20 7 37 37 H 1.09004 * 113.61871 * 105.47143 * 21 20 7 38 38 H 1.09005 * 113.61322 * 270.88720 * 22 21 20 39 39 H 1.08994 * 113.61734 * 139.98252 * 22 21 20 40 40 H 1.09001 * 113.61940 * 220.02143 * 23 22 21 41 41 H 1.09000 * 113.69035 * 89.13395 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.2384 -1.9005 -1.1991 6 8 2.2509 -0.0210 -2.3612 7 7 2.0197 -0.6925 1.1995 8 6 1.3001 -0.2418 2.3982 9 6 1.5230 1.2594 2.5925 10 6 0.6901 1.7494 3.7787 11 16 0.9543 3.5251 4.0090 12 6 -0.0919 3.8126 5.3973 13 1 -0.6494 2.9960 5.8316 14 6 -0.1994 5.0887 5.9327 15 7 0.4796 6.0841 5.4031 16 14 -1.3081 5.3934 7.4050 17 1 -0.5322 5.2028 8.6567 18 1 -1.8298 6.7827 7.3526 19 1 -2.4436 4.4368 7.3760 20 6 3.4691 -0.5123 1.3566 21 6 4.3061 -1.4874 0.5120 22 6 5.2497 -1.6011 1.7210 23 6 4.0463 -1.2146 2.5969 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.5734 -0.5199 -3.1242 28 1 0.2347 -0.4383 2.2779 29 1 1.6729 -0.7801 3.2696 30 1 2.5788 1.4478 2.7873 31 1 1.2193 1.7915 1.6909 32 1 -0.3656 1.5609 3.5840 33 1 0.9939 1.2173 4.6802 34 1 0.4042 6.9759 5.7770 35 1 3.7791 0.5282 1.2600 36 1 3.7870 -2.4160 0.2744 37 1 4.7678 -1.0244 -0.3602 38 1 6.0478 -0.8586 1.7234 39 1 5.6118 -2.6137 1.8987 40 1 4.2980 -0.5313 3.4079 41 1 3.4554 -2.0677 2.9303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589486250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:30 Heat of formation + Delta-G solvation = -96.720683 kcal Electronic energy + Delta-G solvation = -21207.841064 eV Core-core repulsion = 18020.557888 eV Total energy + Delta-G solvation = -3187.283176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.72292 -40.09673 -37.58558 -36.96274 -34.60637 -34.00119 -31.28765 -28.10984 -27.58900 -26.26698 -25.45383 -24.54035 -22.96239 -21.04904 -19.94053 -19.49816 -19.12099 -18.11262 -17.04822 -16.89608 -16.88478 -16.60916 -16.21219 -15.66261 -15.39138 -14.86797 -14.62095 -14.22162 -13.85699 -13.58395 -13.41310 -13.36872 -13.15606 -13.04847 -12.91528 -12.73270 -12.68548 -12.50117 -12.42063 -12.28096 -11.78140 -11.66776 -11.53254 -11.30301 -11.18631 -11.13090 -11.12377 -10.33062 -9.35197 -8.65084 -8.36505 -6.12268 1.23660 1.32556 1.39713 1.49250 1.76941 1.98781 2.29718 2.90304 2.98089 3.32617 3.54305 3.76917 3.89709 3.91774 3.99544 4.02533 4.08504 4.17192 4.32037 4.38878 4.44411 4.60294 4.64132 4.74786 4.80294 4.85551 4.94278 4.94716 5.04176 5.04695 5.09128 5.12771 5.29336 5.37435 5.41107 5.45577 5.68348 5.89321 6.05867 6.19138 7.06265 7.08755 8.72722 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.024266 B = 0.003567 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.593172 B = 7848.146353 C = 8401.976595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.085 3.915 3 H 0.075 0.925 4 C 0.489 3.511 5 O -0.516 6.516 6 O -0.517 6.517 7 N -0.507 5.507 8 C 0.066 3.934 9 C -0.121 4.121 10 C -0.083 4.083 11 S -0.202 6.202 12 C -0.537 4.537 13 H 0.073 0.927 14 C 0.017 3.983 15 N -0.908 5.908 16 Si 0.991 3.009 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.262 1.262 20 C 0.039 3.961 21 C -0.122 4.122 22 C -0.135 4.135 23 C -0.124 4.124 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.426 0.574 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.271 0.729 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.516 -15.114 -11.865 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 H 0.092 0.908 4 C 0.330 3.670 5 O -0.404 6.404 6 O -0.331 6.331 7 N -0.231 5.231 8 C -0.063 4.063 9 C -0.161 4.161 10 C -0.233 4.233 11 S 0.027 5.973 12 C -0.685 4.685 13 H 0.091 0.909 14 C -0.188 4.188 15 N -0.545 5.545 16 Si 0.813 3.187 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.186 1.186 20 C -0.069 4.069 21 C -0.160 4.160 22 C -0.173 4.173 23 C -0.162 4.162 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.288 0.712 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.034 -14.820 -12.189 19.838 hybrid contribution -0.845 0.349 1.044 1.388 sum 4.189 -14.471 -11.145 18.739 Atomic orbital electron populations 1.21950 0.90079 1.03845 1.04524 1.21200 0.98175 0.96143 0.86967 0.90767 1.23233 0.73433 0.85758 0.84589 1.90660 1.47957 1.17360 1.84422 1.84514 1.78909 1.46709 1.22930 1.62346 1.03974 1.55536 1.01261 1.22309 1.00094 0.91738 0.92122 1.21896 0.99617 0.97747 0.96871 1.23108 1.02237 0.97020 1.00922 1.84640 1.62914 1.07060 1.42690 1.23043 1.30848 0.97801 1.16759 0.90875 1.26030 0.97447 0.94703 1.00648 1.70147 1.41319 1.01194 1.41821 0.85052 0.78229 0.77871 0.77502 1.19389 1.20039 1.18622 1.23397 0.86442 0.97611 0.99467 1.23035 0.96654 0.99891 0.96376 1.22734 0.96270 1.02529 0.95774 1.22925 0.97183 1.00486 0.95612 0.90920 0.89980 0.90017 0.71200 0.88838 0.89328 0.92137 0.91562 0.91514 0.91894 0.92034 0.91891 0.89385 0.92810 0.89667 0.90206 0.91481 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.30 71.98 0.60 -2.28 16 2 C 0.08 1.88 1.91 44.17 0.08 1.97 16 3 H 0.07 1.72 6.89 -2.39 -0.02 1.70 16 4 C 0.49 10.72 6.29 71.24 0.45 11.17 16 5 O -0.52 -13.62 14.79 21.97 0.33 -13.29 16 6 O -0.52 -8.68 13.42 -51.34 -0.69 -9.37 16 7 N -0.51 -11.79 4.29 -847.20 -3.63 -15.42 16 8 C 0.07 1.56 4.58 86.30 0.40 1.96 16 9 C -0.12 -3.58 4.30 30.60 0.13 -3.45 16 10 C -0.08 -3.15 5.67 71.98 0.41 -2.74 16 11 S -0.20 -10.47 21.44 -56.49 -1.21 -11.68 16 12 C -0.54 -30.55 9.50 67.95 0.65 -29.90 16 13 H 0.07 4.00 7.80 -2.91 -0.02 3.98 16 14 C 0.02 0.93 5.49 84.86 0.47 1.40 16 15 N -0.91 -54.46 13.22 21.65 0.29 -54.18 16 16 Si 0.99 43.47 29.55 68.60 2.03 45.50 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 20 C 0.04 0.89 2.27 45.44 0.10 0.99 16 21 C -0.12 -2.63 5.71 31.12 0.18 -2.45 16 22 C -0.14 -2.50 8.08 31.12 0.25 -2.25 16 23 C -0.12 -2.58 6.55 31.12 0.20 -2.38 16 24 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.08 1.68 5.63 -2.39 -0.01 1.67 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.43 3.34 9.10 -74.06 -0.67 2.66 16 28 H 0.09 2.06 6.15 -2.39 -0.01 2.05 16 29 H 0.09 2.04 6.93 -2.39 -0.02 2.02 16 30 H 0.06 1.88 7.09 -2.39 -0.02 1.87 16 31 H 0.07 1.98 5.99 -2.39 -0.01 1.97 16 32 H 0.07 2.45 8.14 -2.40 -0.02 2.43 16 33 H 0.06 2.36 8.14 -2.40 -0.02 2.34 16 34 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.06 1.54 7.40 -2.39 -0.02 1.53 16 36 H 0.09 2.21 6.68 -2.38 -0.02 2.20 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.09 1.87 7.89 -2.39 -0.02 1.85 16 Total: -1.00 -69.04 337.73 1.37 -67.67 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.35 Total: 18.74 kcal Atomic # 6 Polarization: -31.88 SS G_CDS: 3.91 Total: -27.97 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: -3.35 Total: -69.60 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.36 Total: -22.66 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -10.47 SS G_CDS: -1.21 Total: -11.68 kcal Total: -69.04 1.37 -67.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589486250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.050 kcal (2) G-P(sol) polarization free energy of solvation -69.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds