Wall clock time and date at job start Tue Mar 31 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47833 * 2 1 4 4 C 1.53002 * 109.47039 * 120.00526 * 2 1 3 5 5 C 1.50703 * 109.46606 * 294.99451 * 4 2 1 6 6 H 1.07995 * 120.00292 * 0.02562 * 5 4 2 7 7 C 1.37888 * 119.99891 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99470 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99849 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47135 * 60.00362 * 9 7 5 11 11 H 1.48500 * 109.46826 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47166 * 300.00248 * 9 7 5 13 13 C 1.53006 * 109.47295 * 239.99833 * 2 1 3 14 14 N 1.46900 * 109.46805 * 80.14224 * 13 2 1 15 15 C 1.46469 * 110.99844 * 57.43450 * 14 13 2 16 16 C 1.53249 * 109.79104 * 162.27308 * 15 14 13 17 17 S 1.81739 * 108.58837 * 62.03974 * 16 15 14 18 18 C 1.81899 * 101.87561 * 308.63845 * 17 16 15 19 19 C 1.46468 * 110.99946 * 291.45463 * 14 13 2 20 20 H 1.09004 * 109.41087 * 77.65036 * 19 14 13 21 21 C 1.53002 * 109.40848 * 317.80491 * 19 14 13 22 22 C 1.50702 * 109.47102 * 174.74645 * 21 19 14 23 23 O 1.20819 * 120.00391 * 353.80540 * 22 21 19 24 24 O 1.34227 * 119.99485 * 173.80311 * 22 21 19 25 25 H 1.08996 * 109.47500 * 172.88886 * 1 2 3 26 26 H 1.08997 * 109.47068 * 292.89098 * 1 2 3 27 27 H 1.09004 * 109.47329 * 52.88676 * 1 2 3 28 28 H 1.08998 * 109.47261 * 54.99464 * 4 2 1 29 29 H 1.08999 * 109.47109 * 174.99991 * 4 2 1 30 30 H 0.97001 * 119.98945 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.46611 * 320.14716 * 13 2 1 32 32 H 1.08997 * 109.47417 * 200.14395 * 13 2 1 33 33 H 1.08993 * 109.40606 * 282.34839 * 15 14 13 34 34 H 1.08992 * 109.40772 * 42.19866 * 15 14 13 35 35 H 1.08999 * 109.63249 * 181.66940 * 16 15 14 36 36 H 1.08999 * 109.63219 * 302.25891 * 16 15 14 37 37 H 1.09005 * 109.63335 * 291.60669 * 18 17 16 38 38 H 1.09006 * 109.62926 * 171.01800 * 18 17 16 39 39 H 1.08998 * 109.47020 * 294.75096 * 21 19 14 40 40 H 1.08999 * 109.46938 * 54.74722 * 21 19 14 41 41 H 0.96708 * 116.99511 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 1.6413 0.0570 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4024 3.7284 8 7 2.6753 -1.5195 3.8511 9 14 1.4975 0.5621 5.2497 10 1 0.0176 0.6686 5.3087 11 1 1.9926 -0.1380 6.4622 12 1 2.0896 1.9224 5.1877 13 6 2.0400 -0.7213 -1.2493 14 7 1.9796 0.1901 -2.3998 15 6 2.7576 1.4053 -2.1481 16 6 3.0485 2.1189 -3.4728 17 16 1.4687 2.6069 -4.2270 18 6 0.5387 1.0440 -4.1923 19 6 0.5918 0.4778 -2.7692 20 1 0.1754 1.2066 -2.0737 21 6 -0.2289 -0.8119 -2.7061 22 6 -1.6806 -0.4964 -2.9596 23 8 -2.0409 0.6526 -3.0580 24 8 -2.5733 -1.4920 -3.0761 25 1 -0.3634 -1.0197 -0.1272 26 1 -0.3633 0.3997 0.9467 27 1 -0.3634 0.6201 -0.8195 28 1 1.6052 -1.7199 1.2951 29 1 3.1262 -0.7996 1.2055 30 1 2.9219 -1.8427 4.7318 31 1 1.4172 -1.5944 -1.4443 32 1 3.0707 -1.0383 -1.0905 33 1 2.1908 2.0695 -1.4958 34 1 3.6982 1.1397 -1.6657 35 1 3.6525 3.0066 -3.2856 36 1 3.5816 1.4443 -4.1427 37 1 0.9894 0.3342 -4.8860 38 1 -0.4979 1.2284 -4.4746 39 1 0.1294 -1.5081 -3.4643 40 1 -0.1220 -1.2626 -1.7194 41 1 -3.4929 -1.2403 -3.2381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609738200.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:11 Heat of formation + Delta-G solvation = -81.837509 kcal Electronic energy + Delta-G solvation = -22089.163627 eV Core-core repulsion = 18902.525834 eV Total energy + Delta-G solvation = -3186.637793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.77580 -39.12657 -36.27102 -34.70419 -33.13289 -32.29445 -29.86532 -28.62925 -26.88037 -25.45043 -23.64741 -22.81168 -21.71722 -20.30370 -18.75981 -18.24463 -17.05615 -16.96487 -16.40369 -15.83643 -15.47215 -15.01455 -14.64752 -14.47512 -13.94498 -13.70052 -13.33250 -12.88435 -12.80079 -12.60608 -12.39606 -12.32868 -11.94394 -11.89283 -11.68431 -11.47338 -11.11429 -10.92728 -10.77425 -10.70319 -10.57109 -10.49368 -10.26442 -9.82697 -9.60213 -9.43224 -9.15218 -8.39322 -8.03580 -7.63620 -6.04073 -4.05963 1.81204 2.11569 2.53218 2.87327 3.29973 3.34842 3.37385 3.95759 4.42320 4.60227 4.65441 4.89653 5.08956 5.18318 5.25453 5.27477 5.31901 5.36176 5.45502 5.57864 5.65441 5.67271 5.76848 5.81683 5.92568 6.08701 6.13190 6.27948 6.37409 6.40336 6.71885 6.88475 6.98502 7.15357 7.22649 7.59303 7.72794 7.78936 7.94307 8.37777 8.99735 9.58108 11.06863 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.016646 B = 0.004996 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.662552 B = 5603.388498 C = 6529.051350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 H 0.063 0.937 4 C 0.032 3.968 5 C -0.517 4.517 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.049 3.951 14 N -0.544 5.544 15 C 0.055 3.945 16 C -0.075 4.075 17 S -0.274 6.274 18 C -0.073 4.073 19 C 0.093 3.907 20 H 0.083 0.917 21 C -0.134 4.134 22 C 0.482 3.518 23 O -0.512 6.512 24 O -0.517 6.517 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.261 0.739 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.139 0.861 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.121 1.216 -16.363 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.142 4.142 3 H 0.082 0.918 4 C -0.006 4.006 5 C -0.556 4.556 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.078 4.078 14 N -0.268 5.268 15 C -0.074 4.074 16 C -0.224 4.224 17 S -0.047 6.047 18 C -0.222 4.222 19 C -0.017 4.017 20 H 0.101 0.899 21 C -0.173 4.173 22 C 0.324 3.676 23 O -0.400 6.400 24 O -0.328 6.328 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.157 0.843 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -3.809 2.111 -17.004 17.553 hybrid contribution -0.850 -0.156 1.973 2.154 sum -4.659 1.955 -15.031 15.857 Atomic orbital electron populations 1.22364 0.96779 0.99910 1.02122 1.21887 0.95235 1.00395 0.96733 0.91846 1.19072 0.96016 0.95363 0.90102 1.21184 1.34972 1.08333 0.91076 0.92801 1.25000 0.95221 0.95042 0.99057 1.69947 1.38814 1.21096 1.23578 0.86713 0.78914 0.80174 0.82554 1.20308 1.21282 1.20287 1.22631 1.02574 0.94942 0.87630 1.61528 1.10614 1.15601 1.39085 1.22212 0.99171 0.91092 0.94909 1.23539 0.95950 1.03477 0.99417 1.86847 1.16342 1.19445 1.82064 1.23691 1.03070 0.96141 0.99269 1.21752 0.88870 0.95230 0.95831 0.89921 1.22082 0.86688 1.00617 1.07915 1.23437 0.89354 0.82854 0.71918 1.90723 1.80883 1.22112 1.46320 1.84548 1.23072 1.41245 1.83977 0.93585 0.91444 0.93632 0.96558 0.96596 0.92967 0.90446 0.90148 0.92511 0.89081 0.87687 0.89220 0.89579 0.87023 0.87147 0.84334 0.73272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 7.52 37.15 0.28 -2.46 16 2 C -0.12 -2.27 2.14 -90.62 -0.19 -2.46 16 3 H 0.06 1.23 5.87 -51.93 -0.30 0.92 16 4 C 0.03 0.77 4.39 -27.88 -0.12 0.64 16 5 C -0.52 -13.98 8.31 -34.44 -0.29 -14.27 16 6 H 0.05 1.44 7.09 -52.49 -0.37 1.06 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.18 13.29 55.43 0.74 -25.45 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.05 0.73 4.83 -3.82 -0.02 0.72 16 14 N -0.54 -7.26 4.50 -227.04 -1.02 -8.28 16 15 C 0.06 0.73 4.44 -3.93 -0.02 0.71 16 16 C -0.08 -0.87 6.67 37.29 0.25 -0.62 16 17 S -0.27 -3.66 22.39 -107.50 -2.41 -6.06 16 18 C -0.07 -0.91 5.72 37.29 0.21 -0.70 16 19 C 0.09 1.22 0.81 -67.82 -0.05 1.16 16 20 H 0.08 1.30 5.15 -51.93 -0.27 1.03 16 21 C -0.13 -1.56 3.70 -27.88 -0.10 -1.67 16 22 C 0.48 5.76 7.69 36.01 0.28 6.04 16 23 O -0.51 -7.45 14.97 -18.74 -0.28 -7.73 16 24 O -0.52 -4.91 13.42 -39.25 -0.53 -5.44 16 25 H 0.05 0.76 6.44 -51.93 -0.33 0.42 16 26 H 0.07 1.36 6.78 -51.93 -0.35 1.00 16 27 H 0.05 0.74 3.94 -51.93 -0.20 0.53 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.02 0.40 8.03 -51.93 -0.42 -0.01 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.08 1.08 5.45 -51.93 -0.28 0.79 16 32 H 0.08 1.25 7.88 -51.93 -0.41 0.84 16 33 H 0.06 0.85 6.65 -51.93 -0.35 0.50 16 34 H 0.09 1.18 7.94 -51.93 -0.41 0.77 16 35 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.11 1.46 6.15 -51.93 -0.32 1.14 16 39 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.14 1.74 2.90 -51.93 -0.15 1.59 16 41 H 0.41 2.17 9.10 45.56 0.41 2.58 16 LS Contribution 319.50 15.07 4.81 4.81 Total: -1.00 -30.91 319.50 -8.59 -39.50 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.01 Total: 3.68 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 0.12 Total: -11.39 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: -0.29 Total: -33.73 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.81 Total: -13.17 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -2.41 Total: -6.06 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.91 -8.59 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609738200.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.336 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds