Wall clock time and date at job start Tue Mar 31 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47833 * 2 1 4 4 C 1.53002 * 109.47039 * 120.00526 * 2 1 3 5 5 C 1.50703 * 109.46606 * 294.99451 * 4 2 1 6 6 H 1.07995 * 120.00292 * 0.02562 * 5 4 2 7 7 C 1.37888 * 119.99891 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99470 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99849 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47135 * 60.00362 * 9 7 5 11 11 H 1.48500 * 109.46826 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47166 * 300.00248 * 9 7 5 13 13 C 1.53006 * 109.47295 * 239.99833 * 2 1 3 14 14 N 1.46900 * 109.46805 * 80.14224 * 13 2 1 15 15 C 1.46469 * 110.99844 * 57.43450 * 14 13 2 16 16 C 1.53249 * 109.79104 * 162.27308 * 15 14 13 17 17 S 1.81739 * 108.58837 * 62.03974 * 16 15 14 18 18 C 1.81899 * 101.87561 * 308.63845 * 17 16 15 19 19 C 1.46468 * 110.99946 * 291.45463 * 14 13 2 20 20 H 1.09004 * 109.41087 * 77.65036 * 19 14 13 21 21 C 1.53002 * 109.40848 * 317.80491 * 19 14 13 22 22 C 1.50702 * 109.47102 * 174.74645 * 21 19 14 23 23 O 1.20819 * 120.00391 * 353.80540 * 22 21 19 24 24 O 1.34227 * 119.99485 * 173.80311 * 22 21 19 25 25 H 1.08996 * 109.47500 * 172.88886 * 1 2 3 26 26 H 1.08997 * 109.47068 * 292.89098 * 1 2 3 27 27 H 1.09004 * 109.47329 * 52.88676 * 1 2 3 28 28 H 1.08998 * 109.47261 * 54.99464 * 4 2 1 29 29 H 1.08999 * 109.47109 * 174.99991 * 4 2 1 30 30 H 0.97001 * 119.98945 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.46611 * 320.14716 * 13 2 1 32 32 H 1.08997 * 109.47417 * 200.14395 * 13 2 1 33 33 H 1.08993 * 109.40606 * 282.34839 * 15 14 13 34 34 H 1.08992 * 109.40772 * 42.19866 * 15 14 13 35 35 H 1.08999 * 109.63249 * 181.66940 * 16 15 14 36 36 H 1.08999 * 109.63219 * 302.25891 * 16 15 14 37 37 H 1.09005 * 109.63335 * 291.60669 * 18 17 16 38 38 H 1.09006 * 109.62926 * 171.01800 * 18 17 16 39 39 H 1.08998 * 109.47020 * 294.75096 * 21 19 14 40 40 H 1.08999 * 109.46938 * 54.74722 * 21 19 14 41 41 H 0.96708 * 116.99511 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 1.6413 0.0570 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4024 3.7284 8 7 2.6753 -1.5195 3.8511 9 14 1.4975 0.5621 5.2497 10 1 0.0176 0.6686 5.3087 11 1 1.9926 -0.1380 6.4622 12 1 2.0896 1.9224 5.1877 13 6 2.0400 -0.7213 -1.2493 14 7 1.9796 0.1901 -2.3998 15 6 2.7576 1.4053 -2.1481 16 6 3.0485 2.1189 -3.4728 17 16 1.4687 2.6069 -4.2270 18 6 0.5387 1.0440 -4.1923 19 6 0.5918 0.4778 -2.7692 20 1 0.1754 1.2066 -2.0737 21 6 -0.2289 -0.8119 -2.7061 22 6 -1.6806 -0.4964 -2.9596 23 8 -2.0409 0.6526 -3.0580 24 8 -2.5733 -1.4920 -3.0761 25 1 -0.3634 -1.0197 -0.1272 26 1 -0.3633 0.3997 0.9467 27 1 -0.3634 0.6201 -0.8195 28 1 1.6052 -1.7199 1.2951 29 1 3.1262 -0.7996 1.2055 30 1 2.9219 -1.8427 4.7318 31 1 1.4172 -1.5944 -1.4443 32 1 3.0707 -1.0383 -1.0905 33 1 2.1908 2.0695 -1.4958 34 1 3.6982 1.1397 -1.6657 35 1 3.6525 3.0066 -3.2856 36 1 3.5816 1.4443 -4.1427 37 1 0.9894 0.3342 -4.8860 38 1 -0.4979 1.2284 -4.4746 39 1 0.1294 -1.5081 -3.4643 40 1 -0.1220 -1.2626 -1.7194 41 1 -3.4929 -1.2403 -3.2381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609738200.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:10 Heat of formation + Delta-G solvation = -102.386380 kcal Electronic energy + Delta-G solvation = -22090.054693 eV Core-core repulsion = 18902.525834 eV Total energy + Delta-G solvation = -3187.528859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.78122 -40.22893 -37.16957 -36.31589 -34.23040 -34.12840 -31.12928 -29.73765 -28.56747 -26.87140 -24.79534 -24.40306 -22.74242 -21.61931 -20.07534 -19.16137 -18.53062 -18.05121 -17.86452 -16.91874 -16.74728 -16.35725 -16.07329 -15.77006 -15.07799 -14.83820 -14.65349 -14.37617 -13.91551 -13.81757 -13.77047 -13.61357 -13.26722 -13.11730 -12.94141 -12.77619 -12.68747 -12.42479 -12.35500 -12.10053 -11.98648 -11.81366 -11.53328 -11.33987 -11.21056 -11.04230 -10.63246 -10.52774 -9.28858 -8.68970 -8.17998 -6.26586 0.82258 1.19727 1.38268 1.39016 1.47018 1.55559 2.02098 2.40074 2.88043 3.15099 3.56869 3.66697 3.86900 4.02891 4.08814 4.19217 4.26248 4.32280 4.37632 4.40145 4.50180 4.62093 4.65201 4.73302 4.77895 4.82006 4.84959 4.97866 5.06204 5.26626 5.29251 5.42539 5.52464 5.63007 5.75352 5.88053 5.95720 6.02747 6.29640 6.88809 7.00205 7.41372 8.92426 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.016646 B = 0.004996 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.662552 B = 5603.388498 C = 6529.051350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 H 0.053 0.947 4 C 0.038 3.962 5 C -0.531 4.531 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.059 3.941 14 N -0.531 5.531 15 C 0.053 3.947 16 C -0.061 4.061 17 S -0.309 6.309 18 C -0.061 4.061 19 C 0.096 3.904 20 H 0.056 0.944 21 C -0.133 4.133 22 C 0.488 3.512 23 O -0.543 6.543 24 O -0.511 6.511 25 H 0.058 0.942 26 H 0.037 0.963 27 H 0.062 0.938 28 H -0.003 1.003 29 H -0.007 1.007 30 H 0.262 0.738 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.036 0.964 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.509 1.056 -17.461 18.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 H 0.071 0.929 4 C 0.001 3.999 5 C -0.569 4.569 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.776 3.224 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.196 1.196 13 C -0.069 4.069 14 N -0.254 5.254 15 C -0.076 4.076 16 C -0.209 4.209 17 S -0.082 6.082 18 C -0.210 4.210 19 C -0.014 4.014 20 H 0.074 0.926 21 C -0.171 4.171 22 C 0.332 3.668 23 O -0.433 6.433 24 O -0.324 6.324 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.015 0.985 29 H 0.011 0.989 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.112 0.888 35 H 0.138 0.862 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -4.221 1.949 -18.118 18.705 hybrid contribution -0.759 -0.121 2.294 2.419 sum -4.980 1.829 -15.824 16.690 Atomic orbital electron populations 1.22287 0.95958 1.00902 1.01161 1.21701 0.95780 0.99492 0.96073 0.92900 1.18945 0.94442 0.94628 0.91905 1.21593 1.34469 1.08421 0.92450 0.93005 1.25812 0.95319 0.95996 1.02194 1.70061 1.40050 1.22600 1.24277 0.85716 0.78780 0.78922 0.78940 1.19636 1.20824 1.19634 1.22482 1.02519 0.95409 0.86451 1.61585 1.10869 1.15450 1.37502 1.22245 0.98929 0.90737 0.95712 1.23524 0.94967 1.04152 0.98266 1.86999 1.17990 1.20931 1.82262 1.23627 1.02787 0.95654 0.98900 1.21667 0.88536 0.95481 0.95713 0.92620 1.22035 0.86688 1.00093 1.08331 1.23387 0.89688 0.82580 0.71169 1.90726 1.81399 1.23343 1.47870 1.84499 1.24306 1.40287 1.83321 0.92294 0.94360 0.91953 0.98486 0.98876 0.92916 0.88671 0.90477 0.94528 0.88786 0.86205 0.87877 0.87901 0.87481 0.84493 0.85093 0.71043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 7.52 71.98 0.54 -4.61 16 2 C -0.11 -4.10 2.14 -10.79 -0.02 -4.13 16 3 H 0.05 2.08 5.87 -2.39 -0.01 2.06 16 4 C 0.04 1.88 4.39 29.85 0.13 2.01 16 5 C -0.53 -29.19 8.31 25.60 0.21 -28.98 16 6 H 0.05 2.81 7.09 -2.91 -0.02 2.79 16 7 C 0.00 0.26 5.46 84.66 0.46 0.73 16 8 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 9 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 C 0.06 1.69 4.83 86.31 0.42 2.11 16 14 N -0.53 -13.28 4.50 -872.21 -3.93 -17.21 16 15 C 0.05 1.34 4.44 86.47 0.38 1.73 16 16 C -0.06 -1.30 6.67 72.07 0.48 -0.81 16 17 S -0.31 -7.84 22.39 -56.49 -1.26 -9.11 16 18 C -0.06 -1.41 5.72 72.07 0.41 -1.00 16 19 C 0.10 2.36 0.81 45.08 0.04 2.40 16 20 H 0.06 1.71 5.15 -2.39 -0.01 1.70 16 21 C -0.13 -2.78 3.70 29.85 0.11 -2.67 16 22 C 0.49 10.67 7.69 71.24 0.55 11.22 16 23 O -0.54 -15.10 14.97 21.99 0.33 -14.77 16 24 O -0.51 -8.38 13.42 -51.39 -0.69 -9.07 16 25 H 0.06 1.89 6.44 -2.39 -0.02 1.88 16 26 H 0.04 1.55 6.78 -2.39 -0.02 1.53 16 27 H 0.06 2.00 3.94 -2.38 -0.01 1.99 16 28 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 29 H -0.01 -0.38 8.03 -2.39 -0.02 -0.40 16 30 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.10 2.45 5.45 -2.39 -0.01 2.43 16 32 H 0.08 2.32 7.88 -2.39 -0.02 2.30 16 33 H 0.04 1.09 6.65 -2.39 -0.02 1.07 16 34 H 0.09 2.34 7.94 -2.39 -0.02 2.32 16 35 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.11 2.63 6.15 -2.38 -0.01 2.62 16 39 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.13 2.99 2.90 -2.39 -0.01 2.98 16 41 H 0.43 3.47 9.10 -74.05 -0.67 2.80 16 Total: -1.00 -66.73 319.50 0.86 -65.88 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.38 Total: 15.07 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 3.71 Total: -22.00 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -3.64 Total: -72.06 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.36 Total: -23.84 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -7.84 SS G_CDS: -1.26 Total: -9.11 kcal Total: -66.73 0.86 -65.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609738200.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.510 kcal (2) G-P(sol) polarization free energy of solvation -66.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds