Wall clock time and date at job start Tue Mar 31 2020 05:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99729 * 2 1 4 4 O 1.20831 * 119.99861 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00152 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47716 * 173.74630 * 5 3 2 7 7 N 1.46903 * 112.90428 * 307.86460 * 6 5 3 8 8 C 1.46900 * 110.99774 * 174.58538 * 7 6 5 9 9 C 1.52998 * 109.47196 * 182.60389 * 8 7 6 10 10 C 1.52994 * 109.47419 * 180.02562 * 9 8 7 11 11 S 1.81006 * 109.47427 * 179.97438 * 10 9 8 12 12 C 1.76191 * 100.00143 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00185 * 359.97438 * 12 11 10 14 14 C 1.38799 * 120.00016 * 180.02562 * 12 11 10 15 15 N 1.31631 * 119.99909 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99865 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47151 * 90.00120 * 16 14 12 18 18 H 1.48497 * 109.46887 * 209.99732 * 16 14 12 19 19 H 1.48494 * 109.47240 * 329.99798 * 16 14 12 20 20 C 1.53770 * 113.61807 * 176.61070 * 6 5 3 21 21 C 1.53777 * 87.08230 * 220.02137 * 20 6 5 22 22 C 1.53781 * 113.60978 * 79.10853 * 6 5 3 23 23 H 1.09002 * 109.47010 * 300.00248 * 1 2 3 24 24 H 1.08996 * 109.47333 * 60.00102 * 1 2 3 25 25 H 1.08994 * 109.46941 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47283 * 53.74195 * 5 3 2 27 27 H 1.09002 * 109.46974 * 293.74457 * 5 3 2 28 28 H 1.00892 * 110.99854 * 298.53844 * 7 6 5 29 29 H 1.09004 * 109.46784 * 302.59997 * 8 7 6 30 30 H 1.08998 * 109.47370 * 62.60061 * 8 7 6 31 31 H 1.09007 * 109.46712 * 299.99992 * 9 8 7 32 32 H 1.09004 * 109.47644 * 59.99497 * 9 8 7 33 33 H 1.09007 * 109.47086 * 299.99657 * 10 9 8 34 34 H 1.08998 * 109.47345 * 59.99551 * 10 9 8 35 35 H 0.97004 * 119.99597 * 179.97438 * 15 14 12 36 36 H 1.08997 * 113.61492 * 105.46805 * 20 6 5 37 37 H 1.09007 * 113.61401 * 334.56922 * 20 6 5 38 38 H 1.09000 * 113.61567 * 139.98118 * 21 20 6 39 39 H 1.09004 * 113.61458 * 270.88197 * 21 20 6 40 40 H 1.08993 * 113.61557 * 25.44423 * 22 6 5 41 41 H 1.08998 * 113.69096 * 254.53957 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0005 2.7337 -0.1576 7 7 3.3721 3.3966 -1.3080 8 6 3.7159 4.8243 -1.3453 9 6 2.9929 5.4927 -2.5164 10 6 3.3515 6.9795 -2.5556 11 16 2.4967 7.7700 -3.9415 12 6 3.0727 9.4244 -3.7528 13 1 3.7514 9.6716 -2.9498 14 6 2.6535 10.4102 -4.6354 15 7 1.8259 10.1090 -5.6137 16 14 3.2637 12.1643 -4.4348 17 1 4.5140 12.3458 -5.2153 18 1 2.2295 13.1078 -4.9303 19 1 3.5326 12.4338 -2.9995 20 6 5.5235 2.9340 -0.0875 21 6 5.2397 4.2041 0.7317 22 6 3.9127 3.5461 1.1452 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.9607 0.6872 -0.8295 27 1 3.9512 0.8806 0.9399 28 1 3.6265 2.9408 -2.1714 29 1 3.4092 5.2964 -0.4119 30 1 4.7928 4.9355 -1.4720 31 1 3.2996 5.0206 -3.4498 32 1 1.9159 5.3815 -2.3897 33 1 3.0451 7.4519 -1.6222 34 1 4.4284 7.0903 -2.6826 35 1 1.5326 10.7980 -6.2303 36 1 5.9828 3.1325 -1.0559 37 1 6.0406 2.1574 0.4760 38 1 5.9309 4.3520 1.5614 39 1 5.1123 5.0981 0.1212 40 1 3.9895 2.9369 2.0457 41 1 3.0719 4.2391 1.1733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352997262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:27 Heat of formation + Delta-G solvation = -64.237502 kcal Electronic energy + Delta-G solvation = -20632.495098 eV Core-core repulsion = 17446.620498 eV Total energy + Delta-G solvation = -3185.874599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95730 -39.75101 -36.35436 -34.64500 -32.39595 -31.75841 -30.61460 -27.73956 -26.01524 -25.69732 -24.95751 -23.00576 -21.05032 -20.88295 -19.03044 -17.55708 -17.39235 -16.75846 -16.58152 -15.72676 -15.57013 -15.18949 -14.77252 -14.30145 -14.02250 -13.90189 -13.51961 -12.99700 -12.95612 -12.77074 -12.56091 -12.15937 -12.03708 -11.80972 -11.63240 -11.35410 -11.04444 -10.86361 -10.81575 -10.75297 -10.73949 -10.50300 -10.39469 -10.28310 -10.24645 -9.46613 -9.02319 -8.27054 -8.24037 -6.47810 -6.19019 -3.88654 2.30266 2.63484 3.23684 3.24788 3.31413 3.58684 4.02217 4.26403 4.31217 4.34436 4.49583 4.69943 4.90297 4.97766 5.03453 5.08619 5.16747 5.22734 5.28491 5.37269 5.40674 5.44727 5.50462 5.55423 5.64544 5.71843 5.85853 5.86885 5.96717 6.04215 6.10605 6.25040 6.38248 6.40156 6.68347 6.82070 7.11818 7.40658 7.64043 7.84011 8.40324 9.27123 10.89194 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.024627 B = 0.003046 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.701989 B = 9189.082908 C = 9976.667288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.373 6.373 3 C 0.452 3.548 4 O -0.465 6.465 5 C -0.092 4.092 6 C 0.108 3.892 7 N -0.650 5.650 8 C 0.060 3.940 9 C -0.097 4.097 10 C -0.111 4.111 11 S -0.133 6.133 12 C -0.515 4.515 13 H 0.072 0.928 14 C 0.070 3.930 15 N -0.870 5.870 16 Si 0.918 3.082 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C -0.168 4.168 21 C -0.162 4.162 22 C -0.128 4.128 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.339 0.661 29 H 0.078 0.922 30 H 0.035 0.965 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.267 0.733 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.693 -20.992 13.352 25.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.291 6.291 3 C 0.293 3.707 4 O -0.348 6.348 5 C -0.130 4.130 6 C 0.015 3.985 7 N -0.279 5.279 8 C -0.069 4.069 9 C -0.135 4.135 10 C -0.260 4.260 11 S 0.095 5.905 12 C -0.664 4.664 13 H 0.090 0.910 14 C -0.139 4.139 15 N -0.506 5.506 16 Si 0.744 3.256 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.208 4.208 21 C -0.199 4.199 22 C -0.166 4.166 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.158 0.842 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.015 -20.923 12.729 24.676 hybrid contribution 1.951 1.602 0.672 2.612 sum 4.966 -19.321 13.401 24.032 Atomic orbital electron populations 1.23181 0.76650 1.03176 1.02610 1.86482 1.23237 1.34340 1.85014 1.23515 0.91864 0.81400 0.73966 1.90755 1.66384 1.35664 1.41956 1.21356 0.88549 0.97910 1.05209 1.21826 0.91527 0.91278 0.93822 1.60324 1.60630 1.02942 1.04042 1.22374 0.97185 0.87377 1.00003 1.21266 1.01543 0.93609 0.97123 1.23210 1.02457 0.97225 1.03103 1.84648 1.62661 1.07689 1.35465 1.22696 1.33013 0.93037 1.17617 0.91018 1.25017 0.94856 0.99362 0.94617 1.70032 1.31231 1.33982 1.15324 0.86172 0.78473 0.82360 0.78550 1.20316 1.20770 1.19697 1.23669 0.97134 0.98900 1.01081 1.23365 0.97659 0.98396 1.00466 1.23056 0.98324 0.99378 0.95824 0.92172 0.91809 0.88578 0.88110 0.87479 0.84227 0.90343 0.94693 0.92038 0.90734 0.92180 0.92443 0.92354 0.91251 0.89756 0.91596 0.88120 0.90133 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.37 -3.82 10.57 -39.25 -0.41 -4.23 16 3 C 0.45 5.10 7.73 36.00 0.28 5.38 16 4 O -0.46 -6.88 14.65 -18.75 -0.27 -7.15 16 5 C -0.09 -0.76 5.45 -27.88 -0.15 -0.91 16 6 C 0.11 1.07 0.91 -130.79 -0.12 0.95 16 7 N -0.65 -8.03 5.10 -99.14 -0.51 -8.53 16 8 C 0.06 0.83 3.85 -3.82 -0.01 0.82 16 9 C -0.10 -1.66 5.50 -26.74 -0.15 -1.81 16 10 C -0.11 -2.31 5.67 37.15 0.21 -2.10 16 11 S -0.13 -3.58 21.44 -107.50 -2.30 -5.89 16 12 C -0.52 -15.10 9.50 30.94 0.29 -14.81 16 13 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 14 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 15 N -0.87 -26.48 13.22 55.49 0.73 -25.75 16 16 Si 0.92 21.89 29.55 -169.99 -5.02 16.87 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 20 C -0.17 -1.44 6.92 -25.93 -0.18 -1.62 16 21 C -0.16 -1.58 7.27 -25.92 -0.19 -1.76 16 22 C -0.13 -1.32 6.50 -25.92 -0.17 -1.49 16 23 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 24 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 25 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.11 0.64 8.02 -51.93 -0.42 0.22 16 28 H 0.34 3.85 8.84 -39.30 -0.35 3.51 16 29 H 0.08 1.13 5.61 -51.93 -0.29 0.84 16 30 H 0.04 0.46 5.84 -51.93 -0.30 0.15 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.06 1.25 8.14 -51.91 -0.42 0.83 16 34 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.07 0.63 7.78 -51.93 -0.40 0.22 16 37 H 0.08 0.57 8.10 -51.92 -0.42 0.15 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.10 1.12 4.62 -51.93 -0.24 0.88 16 40 H 0.08 0.70 8.01 -51.93 -0.42 0.28 16 41 H 0.08 1.04 7.11 -51.93 -0.37 0.67 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -33.70 344.52 -8.37 -42.07 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.56 Total: 1.44 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 0.78 Total: -14.03 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.23 Total: -34.28 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.69 Total: -11.38 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -2.30 Total: -5.89 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.70 -8.37 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352997262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.163 kcal (2) G-P(sol) polarization free energy of solvation -33.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds