Wall clock time and date at job start Tue Mar 31 2020 05:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99729 * 2 1 4 4 O 1.20831 * 119.99861 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00152 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47716 * 173.74630 * 5 3 2 7 7 N 1.46903 * 112.90428 * 307.86460 * 6 5 3 8 8 C 1.46900 * 110.99774 * 174.58538 * 7 6 5 9 9 C 1.52998 * 109.47196 * 182.60389 * 8 7 6 10 10 C 1.52994 * 109.47419 * 180.02562 * 9 8 7 11 11 S 1.81006 * 109.47427 * 179.97438 * 10 9 8 12 12 C 1.76191 * 100.00143 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00185 * 359.97438 * 12 11 10 14 14 C 1.38799 * 120.00016 * 180.02562 * 12 11 10 15 15 N 1.31631 * 119.99909 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99865 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47151 * 90.00120 * 16 14 12 18 18 H 1.48497 * 109.46887 * 209.99732 * 16 14 12 19 19 H 1.48494 * 109.47240 * 329.99798 * 16 14 12 20 20 C 1.53770 * 113.61807 * 176.61070 * 6 5 3 21 21 C 1.53777 * 87.08230 * 220.02137 * 20 6 5 22 22 C 1.53781 * 113.60978 * 79.10853 * 6 5 3 23 23 H 1.09002 * 109.47010 * 300.00248 * 1 2 3 24 24 H 1.08996 * 109.47333 * 60.00102 * 1 2 3 25 25 H 1.08994 * 109.46941 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47283 * 53.74195 * 5 3 2 27 27 H 1.09002 * 109.46974 * 293.74457 * 5 3 2 28 28 H 1.00892 * 110.99854 * 298.53844 * 7 6 5 29 29 H 1.09004 * 109.46784 * 302.59997 * 8 7 6 30 30 H 1.08998 * 109.47370 * 62.60061 * 8 7 6 31 31 H 1.09007 * 109.46712 * 299.99992 * 9 8 7 32 32 H 1.09004 * 109.47644 * 59.99497 * 9 8 7 33 33 H 1.09007 * 109.47086 * 299.99657 * 10 9 8 34 34 H 1.08998 * 109.47345 * 59.99551 * 10 9 8 35 35 H 0.97004 * 119.99597 * 179.97438 * 15 14 12 36 36 H 1.08997 * 113.61492 * 105.46805 * 20 6 5 37 37 H 1.09007 * 113.61401 * 334.56922 * 20 6 5 38 38 H 1.09000 * 113.61567 * 139.98118 * 21 20 6 39 39 H 1.09004 * 113.61458 * 270.88197 * 21 20 6 40 40 H 1.08993 * 113.61557 * 25.44423 * 22 6 5 41 41 H 1.08998 * 113.69096 * 254.53957 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0005 2.7337 -0.1576 7 7 3.3721 3.3966 -1.3080 8 6 3.7159 4.8243 -1.3453 9 6 2.9929 5.4927 -2.5164 10 6 3.3515 6.9795 -2.5556 11 16 2.4967 7.7700 -3.9415 12 6 3.0727 9.4244 -3.7528 13 1 3.7514 9.6716 -2.9498 14 6 2.6535 10.4102 -4.6354 15 7 1.8259 10.1090 -5.6137 16 14 3.2637 12.1643 -4.4348 17 1 4.5140 12.3458 -5.2153 18 1 2.2295 13.1078 -4.9303 19 1 3.5326 12.4338 -2.9995 20 6 5.5235 2.9340 -0.0875 21 6 5.2397 4.2041 0.7317 22 6 3.9127 3.5461 1.1452 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.9607 0.6872 -0.8295 27 1 3.9512 0.8806 0.9399 28 1 3.6265 2.9408 -2.1714 29 1 3.4092 5.2964 -0.4119 30 1 4.7928 4.9355 -1.4720 31 1 3.2996 5.0206 -3.4498 32 1 1.9159 5.3815 -2.3897 33 1 3.0451 7.4519 -1.6222 34 1 4.4284 7.0903 -2.6826 35 1 1.5326 10.7980 -6.2303 36 1 5.9828 3.1325 -1.0559 37 1 6.0406 2.1574 0.4760 38 1 5.9309 4.3520 1.5614 39 1 5.1123 5.0981 0.1212 40 1 3.9895 2.9369 2.0457 41 1 3.0719 4.2391 1.1733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352997262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:25 Heat of formation + Delta-G solvation = -85.723279 kcal Electronic energy + Delta-G solvation = -20633.426791 eV Core-core repulsion = 17446.620498 eV Total energy + Delta-G solvation = -3186.806293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.77877 -40.58661 -37.23218 -35.89690 -34.61462 -32.66361 -31.67115 -28.49673 -27.84460 -26.75468 -26.17823 -24.03261 -22.31825 -21.68556 -19.97934 -19.42200 -18.37503 -17.60394 -17.39322 -16.90927 -16.77561 -16.53398 -16.41361 -15.68259 -15.28549 -14.78549 -14.64758 -14.27215 -14.02786 -13.88167 -13.59470 -13.22670 -13.17872 -13.03331 -12.88247 -12.81044 -12.58932 -12.41085 -12.36379 -11.80095 -11.71365 -11.64825 -11.52157 -11.25307 -11.15328 -11.14463 -11.07335 -10.33195 -9.18816 -8.68546 -8.38317 -6.15165 1.30110 1.38645 1.47063 1.47890 1.73098 1.92641 2.27300 2.95659 3.06024 3.32988 3.58073 3.60663 3.78148 3.96346 3.99758 4.15346 4.27026 4.34917 4.36437 4.39208 4.43500 4.50674 4.64512 4.70771 4.75126 4.76709 4.81928 4.83092 4.90067 5.08531 5.11736 5.15662 5.22564 5.30865 5.38190 5.43020 5.60543 6.15520 6.16999 6.51672 7.01684 7.03429 8.71312 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.024627 B = 0.003046 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.701989 B = 9189.082908 C = 9976.667288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.373 6.373 3 C 0.450 3.550 4 O -0.510 6.510 5 C -0.088 4.088 6 C 0.103 3.897 7 N -0.664 5.664 8 C 0.079 3.921 9 C -0.085 4.085 10 C -0.084 4.084 11 S -0.201 6.201 12 C -0.538 4.538 13 H 0.073 0.927 14 C 0.014 3.986 15 N -0.908 5.908 16 Si 0.996 3.004 17 H -0.266 1.266 18 H -0.274 1.274 19 H -0.263 1.263 20 C -0.152 4.152 21 C -0.165 4.165 22 C -0.131 4.131 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.128 0.872 26 H 0.124 0.876 27 H 0.139 0.861 28 H 0.345 0.655 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.272 0.728 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.669 -22.110 14.594 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.291 6.291 3 C 0.293 3.707 4 O -0.396 6.396 5 C -0.125 4.125 6 C 0.011 3.989 7 N -0.295 5.295 8 C -0.052 4.052 9 C -0.124 4.124 10 C -0.234 4.234 11 S 0.028 5.972 12 C -0.686 4.686 13 H 0.091 0.909 14 C -0.191 4.191 15 N -0.545 5.545 16 Si 0.818 3.182 17 H -0.191 1.191 18 H -0.199 1.199 19 H -0.187 1.187 20 C -0.192 4.192 21 C -0.202 4.202 22 C -0.169 4.169 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.146 0.854 26 H 0.142 0.858 27 H 0.156 0.844 28 H 0.164 0.836 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.131 0.869 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.997 -22.079 13.975 26.604 hybrid contribution 1.283 1.835 0.337 2.264 sum 6.280 -20.244 14.312 25.575 Atomic orbital electron populations 1.23370 0.75832 1.05056 1.01849 1.86486 1.24151 1.33869 1.84587 1.24196 0.93093 0.80944 0.72461 1.90750 1.67571 1.37044 1.44240 1.21494 0.86262 0.97002 1.07768 1.21917 0.92662 0.91979 0.92321 1.60221 1.61816 1.02089 1.05360 1.22093 0.97147 0.88388 0.97553 1.21152 1.00720 0.91499 0.99018 1.23121 1.01834 0.98682 0.99746 1.84681 1.64650 1.08466 1.39438 1.23036 1.33450 0.94014 1.18082 0.90916 1.26110 0.94716 1.04361 0.93930 1.70168 1.32346 1.35751 1.16199 0.84988 0.78250 0.75976 0.79012 1.19070 1.19878 1.18733 1.23609 0.95802 0.98676 1.01066 1.23329 0.97640 0.98334 1.00933 1.23109 0.97382 0.99333 0.97088 0.92548 0.93027 0.85389 0.85796 0.84366 0.83603 0.91265 0.93386 0.91777 0.92746 0.92406 0.91626 0.91944 0.91460 0.86949 0.90352 0.90030 0.88150 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.37 -7.08 10.57 -51.40 -0.54 -7.62 16 3 C 0.45 9.59 7.73 71.24 0.55 10.14 16 4 O -0.51 -15.19 14.65 21.95 0.32 -14.87 16 5 C -0.09 -1.18 5.45 29.85 0.16 -1.01 16 6 C 0.10 1.82 0.91 4.05 0.00 1.83 16 7 N -0.66 -15.89 5.10 -467.58 -2.38 -18.28 16 8 C 0.08 2.15 3.85 86.30 0.33 2.48 16 9 C -0.08 -2.97 5.50 30.59 0.17 -2.80 16 10 C -0.08 -3.58 5.67 71.98 0.41 -3.17 16 11 S -0.20 -11.18 21.44 -56.49 -1.21 -12.39 16 12 C -0.54 -32.03 9.50 67.95 0.65 -31.38 16 13 H 0.07 4.16 7.80 -2.91 -0.02 4.14 16 14 C 0.01 0.79 5.49 84.86 0.47 1.26 16 15 N -0.91 -56.17 13.22 21.65 0.29 -55.88 16 16 Si 1.00 44.83 29.55 68.60 2.03 46.86 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 20 C -0.15 -2.10 6.92 31.12 0.22 -1.88 16 21 C -0.17 -2.90 7.27 31.12 0.23 -2.67 16 22 C -0.13 -2.53 6.50 31.12 0.20 -2.33 16 23 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 24 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 25 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.14 1.04 8.02 -2.39 -0.02 1.02 16 28 H 0.34 7.43 8.84 -89.70 -0.79 6.63 16 29 H 0.07 2.04 5.61 -2.39 -0.01 2.02 16 30 H 0.05 1.20 5.84 -2.39 -0.01 1.18 16 31 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.06 2.67 8.14 -2.40 -0.02 2.65 16 35 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 36 H 0.07 1.00 7.78 -2.39 -0.02 0.98 16 37 H 0.11 0.97 8.10 -2.38 -0.02 0.95 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 1.74 4.62 -2.38 -0.01 1.73 16 40 H 0.10 1.49 8.01 -2.39 -0.02 1.48 16 41 H 0.05 1.26 7.11 -2.39 -0.02 1.24 16 Total: -1.00 -75.11 344.52 3.30 -71.80 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.23 Total: 18.21 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 4.58 Total: -27.83 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -2.10 Total: -74.16 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.22 Total: -22.49 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: -11.18 SS G_CDS: -1.21 Total: -12.39 kcal Total: -75.11 3.30 -71.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352997262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.919 kcal (2) G-P(sol) polarization free energy of solvation -75.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds