Wall clock time and date at job start Tue Mar 31 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99622 * 2 1 4 4 H 1.48497 * 109.47108 * 240.00063 * 3 2 1 5 5 H 1.48505 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47359 * 119.99773 * 3 2 1 7 7 C 1.37875 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99507 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00032 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46708 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99511 * 180.02562 * 10 9 7 12 12 O 1.21584 * 119.99970 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99489 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 C 1.38832 * 119.74010 * 269.72719 * 16 15 14 18 18 C 1.37740 * 120.66812 * 179.75575 * 17 16 15 19 19 C 1.39129 * 119.78076 * 0.51625 * 18 17 16 20 20 N 1.37684 * 133.50931 * 179.76964 * 19 18 17 21 21 H 0.96998 * 125.06028 * 0.02562 * 20 19 18 22 22 C 1.36826 * 109.87480 * 179.97438 * 20 19 18 23 23 C 1.34237 * 109.93057 * 359.97438 * 22 20 19 24 24 C 1.40665 * 119.32881 * 359.74009 * 19 18 17 25 25 C 1.36631 * 119.73613 * 90.00010 * 16 15 14 26 26 H 0.96994 * 120.00630 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46995 * 60.00309 * 9 7 2 28 28 H 1.08994 * 109.46942 * 300.00079 * 9 7 2 29 29 H 0.97003 * 120.00113 * 0.02562 * 10 9 7 30 30 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 31 31 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 32 32 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 33 33 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 34 34 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 35 35 H 1.08007 * 119.66229 * 0.02562 * 17 16 15 36 36 H 1.08008 * 120.10991 * 180.27444 * 18 17 16 37 37 H 1.07998 * 125.03772 * 180.02562 * 22 20 19 38 38 H 1.08000 * 126.50736 * 180.02562 * 23 22 20 39 39 H 1.08006 * 120.11562 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0015 11 6 1.7540 -4.8833 0.0019 12 8 0.5587 -5.1055 0.0029 13 7 2.6300 -5.9076 0.0022 14 6 2.1417 -7.2889 0.0020 15 6 3.3317 -8.2505 0.0018 16 6 2.8295 -9.6713 0.0023 17 6 2.6059 -10.3223 1.2079 18 6 2.1423 -11.6191 1.2307 19 6 1.9051 -12.2893 0.0348 20 7 1.4574 -13.5552 -0.2698 21 1 1.2175 -14.2331 0.3812 22 6 1.4003 -13.7143 -1.6276 23 6 1.7979 -12.5865 -2.2375 24 6 2.1383 -11.6271 -1.1841 25 6 2.6032 -10.3105 -1.1839 26 1 -0.4851 0.8399 -0.0004 27 1 0.6242 -2.5575 -0.8880 28 1 0.6249 -2.5563 0.8919 29 1 3.1570 -3.4353 0.0010 30 1 3.5836 -5.7304 0.0017 31 1 1.5359 -7.4602 0.8918 32 1 1.5364 -7.4602 -0.8881 33 1 3.9372 -8.0791 -0.8883 34 1 3.9374 -8.0793 0.8917 35 1 2.7932 -9.8051 2.1374 36 1 1.9672 -12.1155 2.1739 37 1 1.0817 -14.6136 -2.1337 38 1 1.8560 -12.4184 -3.3028 39 1 2.7832 -9.7991 -2.1180 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442599101.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:10 Heat of formation + Delta-G solvation = 15.260844 kcal Electronic energy + Delta-G solvation = -20697.917320 eV Core-core repulsion = 17412.338828 eV Total energy + Delta-G solvation = -3285.578493 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.41196 -39.14006 -37.76857 -34.89946 -33.93906 -32.40693 -32.14711 -31.38023 -28.95677 -28.07225 -26.65375 -23.66782 -22.76299 -22.13044 -21.24380 -20.57180 -19.98702 -18.27869 -17.95193 -16.39963 -16.04320 -15.76310 -15.37924 -14.89775 -14.68590 -14.54108 -14.35604 -13.93724 -13.65042 -13.53805 -13.25366 -12.99558 -12.79536 -12.34049 -11.91072 -11.89013 -11.65891 -11.27780 -11.27392 -10.94160 -10.92267 -10.80715 -10.25451 -9.94816 -9.33544 -9.32311 -8.70165 -8.59212 -8.32187 -7.92337 -7.67680 -6.10230 -4.16710 0.95078 1.41115 2.49346 2.87706 3.29277 3.33096 3.34870 3.46622 3.74661 4.05642 4.37051 4.46884 4.60083 4.79662 4.90164 5.02634 5.12217 5.17348 5.25459 5.27333 5.31111 5.44758 5.52614 5.66661 5.78573 5.88905 6.04082 6.16106 6.22607 6.47563 6.54639 6.59124 6.94283 6.98743 7.20570 7.25393 7.58776 7.62453 7.63994 7.98182 8.11381 8.82595 9.02991 9.40896 9.55438 11.00008 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.048014 B = 0.002187 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.019474 B =12799.612964 C =12896.558858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.062 3.938 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.731 5.731 11 C 0.692 3.308 12 O -0.601 6.601 13 N -0.759 5.759 14 C 0.147 3.853 15 C -0.086 4.086 16 C -0.103 4.103 17 C -0.088 4.088 18 C -0.130 4.130 19 C 0.091 3.909 20 N -0.599 5.599 21 H 0.414 0.586 22 C 0.046 3.954 23 C -0.203 4.203 24 C -0.109 4.109 25 C -0.063 4.063 26 H 0.266 0.734 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.386 0.614 30 H 0.391 0.609 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.169 0.831 38 H 0.146 0.854 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.183 -27.972 -0.543 29.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.383 5.383 11 C 0.392 3.608 12 O -0.481 6.481 13 N -0.417 5.417 14 C 0.022 3.978 15 C -0.124 4.124 16 C -0.104 4.104 17 C -0.107 4.107 18 C -0.151 4.151 19 C -0.016 4.016 20 N -0.202 5.202 21 H 0.250 0.750 22 C -0.080 4.080 23 C -0.229 4.229 24 C -0.114 4.114 25 C -0.082 4.082 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.218 0.782 30 H 0.224 0.776 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.186 0.814 38 H 0.164 0.836 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.814 -28.111 -0.489 28.929 hybrid contribution 1.110 0.653 0.274 1.317 sum 7.924 -27.458 -0.215 28.579 Atomic orbital electron populations 1.69971 1.06074 1.27323 1.48956 1.24953 0.94923 0.99384 0.94844 0.86469 0.79378 0.82359 0.78624 1.20115 1.21119 1.20117 1.21203 0.93227 0.90486 1.53071 0.92004 1.18960 0.87809 0.81085 0.97573 1.45712 1.10714 1.04466 1.77421 1.16158 0.85228 0.81062 0.78397 1.90872 1.14313 1.84271 1.58600 1.45170 1.08755 1.05254 1.82494 1.21032 0.95282 0.79163 1.02330 1.20727 0.97620 0.90625 1.03412 1.19150 1.02778 0.95619 0.92880 1.20753 0.98710 0.93509 0.97771 1.19989 1.05042 0.95295 0.94774 1.18291 1.02006 0.85803 0.95489 1.41785 1.58980 1.12445 1.06980 0.74981 1.21799 1.03722 1.00217 0.82301 1.21735 1.09686 0.93028 0.98406 1.19200 1.04969 0.94736 0.92446 1.20188 0.97827 0.92328 0.97869 0.92444 0.95785 0.95790 0.78211 0.77643 0.91944 0.91938 0.90467 0.90453 0.85517 0.86297 0.81411 0.83645 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 9 C 0.27 7.35 5.43 -5.19 -0.03 7.32 16 10 N -0.73 -16.16 5.55 -66.42 -0.37 -16.53 16 11 C 0.69 14.90 8.57 -86.92 -0.74 14.16 16 12 O -0.60 -15.77 16.34 5.29 0.09 -15.68 16 13 N -0.76 -11.72 5.56 -65.22 -0.36 -12.08 16 14 C 0.15 2.02 5.66 -4.04 -0.02 1.99 16 15 C -0.09 -0.85 5.44 -27.89 -0.15 -1.00 16 16 C -0.10 -1.08 5.10 -104.98 -0.54 -1.62 16 17 C -0.09 -0.87 9.66 -39.54 -0.38 -1.25 16 18 C -0.13 -1.24 10.08 -39.43 -0.40 -1.63 16 19 C 0.09 0.92 7.28 -83.99 -0.61 0.31 16 20 N -0.60 -4.41 6.07 -10.65 -0.06 -4.47 16 21 H 0.41 1.76 8.96 -40.82 -0.37 1.40 16 22 C 0.05 0.32 11.81 -16.73 -0.20 0.12 16 23 C -0.20 -1.84 11.08 -37.67 -0.42 -2.26 16 24 C -0.11 -1.21 6.37 -105.14 -0.67 -1.88 16 25 C -0.06 -0.69 9.67 -39.64 -0.38 -1.08 16 26 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.39 7.23 8.34 -40.82 -0.34 6.89 16 30 H 0.39 4.68 8.49 -40.82 -0.35 4.34 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 35 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 36 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.17 0.56 8.06 -52.49 -0.42 0.13 16 38 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -36.09 339.25 -10.07 -46.16 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.23 Total: 7.70 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -4.96 Total: -0.47 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.06 Total: -58.93 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.09 Total: -15.68 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.09 -10.07 -46.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442599101.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.420 kcal (2) G-P(sol) polarization free energy of solvation -36.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds