Wall clock time and date at job start Tue Mar 31 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99622 * 2 1 4 4 H 1.48497 * 109.47108 * 240.00063 * 3 2 1 5 5 H 1.48505 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47359 * 119.99773 * 3 2 1 7 7 C 1.37875 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99507 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00032 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46708 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99511 * 180.02562 * 10 9 7 12 12 O 1.21584 * 119.99970 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99489 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 C 1.38832 * 119.74010 * 269.72719 * 16 15 14 18 18 C 1.37740 * 120.66812 * 179.75575 * 17 16 15 19 19 C 1.39129 * 119.78076 * 0.51625 * 18 17 16 20 20 N 1.37684 * 133.50931 * 179.76964 * 19 18 17 21 21 H 0.96998 * 125.06028 * 0.02562 * 20 19 18 22 22 C 1.36826 * 109.87480 * 179.97438 * 20 19 18 23 23 C 1.34237 * 109.93057 * 359.97438 * 22 20 19 24 24 C 1.40665 * 119.32881 * 359.74009 * 19 18 17 25 25 C 1.36631 * 119.73613 * 90.00010 * 16 15 14 26 26 H 0.96994 * 120.00630 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46995 * 60.00309 * 9 7 2 28 28 H 1.08994 * 109.46942 * 300.00079 * 9 7 2 29 29 H 0.97003 * 120.00113 * 0.02562 * 10 9 7 30 30 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 31 31 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 32 32 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 33 33 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 34 34 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 35 35 H 1.08007 * 119.66229 * 0.02562 * 17 16 15 36 36 H 1.08008 * 120.10991 * 180.27444 * 18 17 16 37 37 H 1.07998 * 125.03772 * 180.02562 * 22 20 19 38 38 H 1.08000 * 126.50736 * 180.02562 * 23 22 20 39 39 H 1.08006 * 120.11562 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0015 11 6 1.7540 -4.8833 0.0019 12 8 0.5587 -5.1055 0.0029 13 7 2.6300 -5.9076 0.0022 14 6 2.1417 -7.2889 0.0020 15 6 3.3317 -8.2505 0.0018 16 6 2.8295 -9.6713 0.0023 17 6 2.6059 -10.3223 1.2079 18 6 2.1423 -11.6191 1.2307 19 6 1.9051 -12.2893 0.0348 20 7 1.4574 -13.5552 -0.2698 21 1 1.2175 -14.2331 0.3812 22 6 1.4003 -13.7143 -1.6276 23 6 1.7979 -12.5865 -2.2375 24 6 2.1383 -11.6271 -1.1841 25 6 2.6032 -10.3105 -1.1839 26 1 -0.4851 0.8399 -0.0004 27 1 0.6242 -2.5575 -0.8880 28 1 0.6249 -2.5563 0.8919 29 1 3.1570 -3.4353 0.0010 30 1 3.5836 -5.7304 0.0017 31 1 1.5359 -7.4602 0.8918 32 1 1.5364 -7.4602 -0.8881 33 1 3.9372 -8.0791 -0.8883 34 1 3.9374 -8.0793 0.8917 35 1 2.7932 -9.8051 2.1374 36 1 1.9672 -12.1155 2.1739 37 1 1.0817 -14.6136 -2.1337 38 1 1.8560 -12.4184 -3.3028 39 1 2.7832 -9.7991 -2.1180 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000442599101.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:09 Heat of formation + Delta-G solvation = -10.663547 kcal Electronic energy + Delta-G solvation = -20699.041486 eV Core-core repulsion = 17412.338828 eV Total energy + Delta-G solvation = -3286.702659 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.06413 -40.84307 -38.58777 -36.38277 -35.80937 -34.34698 -33.02193 -32.37211 -29.63537 -29.54048 -28.19357 -25.05972 -23.98676 -23.35870 -22.02151 -21.81533 -21.17636 -19.71841 -18.91896 -18.00085 -17.39781 -17.05667 -16.68539 -16.48025 -15.91472 -15.46245 -15.32475 -15.16580 -14.83395 -14.82076 -14.50823 -14.00442 -13.96962 -13.81154 -13.41998 -13.29257 -12.90198 -12.66650 -12.49441 -12.25253 -12.21189 -12.08164 -11.67840 -11.47746 -11.23133 -10.77331 -10.64868 -10.24538 -9.55279 -9.04149 -8.59499 -8.25942 -6.42678 0.24673 0.64488 1.45001 1.49907 1.57801 1.86714 1.94248 2.27554 2.32663 2.41990 2.94561 3.08605 3.57450 3.80354 4.02197 4.08651 4.17757 4.21676 4.32345 4.49281 4.57510 4.65542 4.74856 4.94626 5.01673 5.04417 5.12093 5.19303 5.23310 5.29245 5.48810 5.51293 5.58859 5.71255 5.78674 5.83820 5.86265 5.87430 6.25831 6.32364 6.69113 6.76484 7.26662 7.36579 7.76155 8.86274 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.048014 B = 0.002187 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.019474 B =12799.612964 C =12896.558858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.285 3.715 10 N -0.723 5.723 11 C 0.689 3.311 12 O -0.653 6.653 13 N -0.731 5.731 14 C 0.148 3.852 15 C -0.070 4.070 16 C -0.113 4.113 17 C -0.102 4.102 18 C -0.133 4.133 19 C 0.072 3.928 20 N -0.591 5.591 21 H 0.429 0.571 22 C 0.063 3.937 23 C -0.238 4.238 24 C -0.137 4.137 25 C -0.082 4.082 26 H 0.269 0.731 27 H -0.016 1.016 28 H -0.015 1.015 29 H 0.406 0.594 30 H 0.413 0.587 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.209 0.791 38 H 0.154 0.846 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.491 -28.858 -0.274 30.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.161 3.839 10 N -0.377 5.377 11 C 0.388 3.612 12 O -0.536 6.536 13 N -0.389 5.389 14 C 0.024 3.976 15 C -0.107 4.107 16 C -0.115 4.115 17 C -0.122 4.122 18 C -0.154 4.154 19 C -0.036 4.036 20 N -0.195 5.195 21 H 0.268 0.732 22 C -0.063 4.063 23 C -0.262 4.262 24 C -0.142 4.142 25 C -0.101 4.101 26 H 0.077 0.923 27 H 0.002 0.998 28 H 0.002 0.998 29 H 0.241 0.759 30 H 0.250 0.750 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.225 0.775 38 H 0.172 0.828 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.211 -29.065 -0.208 30.491 hybrid contribution 0.334 0.753 0.174 0.842 sum 9.544 -28.312 -0.034 29.878 Atomic orbital electron populations 1.70144 1.08309 1.28624 1.49930 1.26106 0.95818 1.03978 0.93901 0.85162 0.77836 0.76402 0.79504 1.18630 1.21152 1.18593 1.21582 0.94360 0.90414 1.52930 0.89686 1.18402 0.88157 0.83434 0.93866 1.45289 1.10919 1.03764 1.77730 1.16362 0.85138 0.81704 0.77956 1.90838 1.16993 1.85034 1.60706 1.44905 1.09134 1.04543 1.80268 1.21136 0.96979 0.78645 1.00865 1.20611 0.95912 0.89062 1.05133 1.19249 1.03294 0.95815 0.93138 1.21006 0.99021 0.94004 0.98131 1.20285 1.04199 0.95290 0.95577 1.18534 1.02594 0.86978 0.95493 1.41872 1.58027 1.11912 1.07676 0.73186 1.22424 1.01177 1.00743 0.81998 1.22021 1.11645 0.93686 0.98885 1.19614 1.05453 0.95289 0.93833 1.20364 0.98607 0.92862 0.98264 0.92257 0.99809 0.99751 0.75879 0.75031 0.93267 0.93725 0.88995 0.88423 0.84085 0.84162 0.77465 0.82793 0.85664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.99 42.78 29.54 68.60 2.03 44.80 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.56 -30.79 9.28 25.60 0.24 -30.55 16 8 H 0.09 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.28 16.26 5.43 85.63 0.46 16.72 16 10 N -0.72 -32.21 5.55 -482.30 -2.68 -34.88 16 11 C 0.69 30.09 8.57 179.05 1.53 31.62 16 12 O -0.65 -35.64 16.34 -3.98 -0.07 -35.70 16 13 N -0.73 -21.92 5.56 -478.53 -2.66 -24.58 16 14 C 0.15 4.03 5.66 86.38 0.49 4.52 16 15 C -0.07 -1.27 5.44 29.85 0.16 -1.10 16 16 C -0.11 -2.33 5.10 -20.10 -0.10 -2.43 16 17 C -0.10 -1.94 9.66 22.29 0.22 -1.72 16 18 C -0.13 -2.39 10.08 22.37 0.23 -2.16 16 19 C 0.07 1.39 7.28 39.03 0.28 1.67 16 20 N -0.59 -7.62 6.07 -187.62 -1.14 -8.76 16 21 H 0.43 2.68 8.96 -92.71 -0.83 1.84 16 22 C 0.06 0.75 11.81 83.00 0.98 1.73 16 23 C -0.24 -4.15 11.08 23.51 0.26 -3.89 16 24 C -0.14 -3.03 6.37 -20.20 -0.13 -3.16 16 25 C -0.08 -1.82 9.67 22.23 0.22 -1.61 16 26 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 27 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 28 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 29 H 0.41 14.66 8.34 -92.71 -0.77 13.89 16 30 H 0.41 8.92 8.49 -92.71 -0.79 8.13 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 1.42 8.08 -2.39 -0.02 1.40 16 34 H 0.10 1.41 8.08 -2.39 -0.02 1.39 16 35 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 36 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.21 0.64 8.06 -2.91 -0.02 0.61 16 38 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -81.75 339.25 -0.23 -81.98 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -1.30 Total: 23.89 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.30 Total: 10.19 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -6.19 Total: -125.16 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -0.07 Total: -35.70 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -81.75 -0.23 -81.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442599101.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.313 kcal (2) G-P(sol) polarization free energy of solvation -81.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds