Wall clock time and date at job start Tue Mar 31 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 120.00009 * 2 1 4 4 H 1.48494 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46926 * 300.00681 * 3 2 1 6 6 H 1.48499 * 109.46605 * 60.00025 * 3 2 1 7 7 C 1.37873 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00416 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00126 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.78343 * 61.79738 * 9 7 2 11 11 C 1.54601 * 110.72293 * 298.54914 * 9 7 2 12 12 C 1.53989 * 105.13919 * 219.68083 * 11 9 7 13 13 N 1.47904 * 107.05779 * 358.77693 * 12 11 9 14 14 C 1.46900 * 111.00167 * 145.84777 * 13 12 11 15 15 C 1.50708 * 109.46795 * 286.62943 * 14 13 12 16 16 C 1.36503 * 120.18242 * 94.98837 * 15 14 13 17 17 C 1.38921 * 120.62591 * 179.66231 * 16 15 14 18 18 C 1.36625 * 120.81372 * 0.65014 * 17 16 15 19 19 C 1.39247 * 119.85757 * 359.66625 * 18 17 16 20 20 N 1.37040 * 133.86015 * 180.02562 * 19 18 17 21 21 H 0.96998 * 125.45991 * 359.94345 * 20 19 18 22 22 N 1.39880 * 109.07696 * 179.97438 * 20 19 18 23 23 C 1.30236 * 110.09443 * 0.02562 * 22 20 19 24 24 C 1.39903 * 120.18104 * 275.26564 * 15 14 13 25 25 C 1.48534 * 105.82377 * 25.32827 * 13 12 11 26 26 H 0.96997 * 120.00295 * 359.97438 * 1 2 3 27 27 H 0.96705 * 114.00145 * 298.20951 * 10 9 7 28 28 H 1.09000 * 110.30900 * 100.76509 * 11 9 7 29 29 H 1.08993 * 110.30693 * 338.59753 * 11 9 7 30 30 H 1.08996 * 109.91736 * 118.12351 * 12 11 9 31 31 H 1.09004 * 109.91990 * 239.22619 * 12 11 9 32 32 H 1.09001 * 109.47353 * 46.62526 * 14 13 12 33 33 H 1.08999 * 109.47435 * 166.63201 * 14 13 12 34 34 H 1.08001 * 119.68601 * 359.97438 * 16 15 14 35 35 H 1.07999 * 119.59422 * 180.29761 * 17 16 15 36 36 H 1.08001 * 120.07163 * 179.69013 * 18 17 16 37 37 H 1.08001 * 126.10693 * 180.02562 * 23 22 20 38 38 H 1.08998 * 110.66458 * 79.22752 * 25 13 12 39 39 H 1.08998 * 110.66776 * 202.19477 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 0.4504 -2.6224 -1.1777 11 6 0.3797 -2.6277 1.2699 12 6 0.5077 -4.1014 1.6980 13 7 1.3772 -4.7678 0.7043 14 6 2.1994 -5.8076 1.3375 15 6 3.2885 -5.1595 2.1530 16 6 3.1105 -4.9462 3.4895 17 6 4.1110 -4.3559 4.2514 18 6 5.2879 -3.9644 3.6786 19 6 5.4957 -4.1632 2.3161 20 7 6.5344 -3.8916 1.4645 21 1 7.3726 -3.4726 1.7149 22 7 6.1918 -4.3150 0.1760 23 6 4.9975 -4.8344 0.1785 24 6 4.4852 -4.7679 1.5433 25 6 2.2273 -3.6957 0.1262 26 1 -0.4850 0.8400 0.0004 27 1 -0.2296 -1.9402 -1.2640 28 1 -0.6591 -2.3889 1.0419 29 1 0.7560 -1.9717 2.0548 30 1 0.9603 -4.1626 2.6876 31 1 -0.4757 -4.5715 1.7098 32 1 1.5740 -6.4195 1.9876 33 1 2.6471 -6.4359 0.5675 34 1 2.1850 -5.2438 3.9600 35 1 3.9542 -4.1994 5.3084 36 1 6.0557 -3.5021 4.2813 37 1 4.4792 -5.2424 -0.6767 38 1 3.0494 -3.4518 0.7990 39 1 2.6069 -3.9911 -0.8519 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600166622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:13 Heat of formation + Delta-G solvation = 50.745188 kcal Electronic energy + Delta-G solvation = -23630.573131 eV Core-core repulsion = 20346.533355 eV Total energy + Delta-G solvation = -3284.039776 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.28757 -38.64832 -36.91927 -34.84360 -32.42386 -32.06082 -30.59002 -29.63095 -28.74753 -27.85060 -25.58014 -23.95041 -22.48869 -21.88485 -21.27906 -19.84159 -19.26443 -17.32765 -16.99960 -16.59885 -15.24592 -15.14431 -15.12778 -14.76822 -14.50080 -14.23570 -13.96092 -13.61936 -13.27744 -13.06584 -12.42827 -11.94773 -11.82642 -11.71158 -11.48106 -11.25779 -11.03902 -10.97504 -10.75843 -10.70417 -10.59469 -10.38095 -10.31851 -9.93450 -9.70993 -9.08557 -8.54687 -8.43440 -8.06342 -7.87831 -7.60104 -6.16113 -4.23018 1.05703 1.65649 2.66430 2.84618 3.22244 3.30904 3.35796 3.89123 4.33209 4.60642 4.78580 4.89074 4.94290 5.01333 5.12688 5.34871 5.38593 5.47073 5.79249 5.82493 5.85526 5.98431 6.06021 6.12295 6.14280 6.28200 6.45254 6.56586 6.57405 6.67955 6.71606 6.96686 6.97813 7.12431 7.40473 7.45886 7.57589 7.60760 7.71498 7.73612 7.87685 8.25941 8.79547 9.45456 9.61355 10.90985 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.006943 C = 0.005960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.049289 B = 4032.099220 C = 4697.097932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.894 3.106 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.256 3.744 10 O -0.581 6.581 11 C -0.127 4.127 12 C 0.028 3.972 13 N -0.500 5.500 14 C 0.077 3.923 15 C -0.029 4.029 16 C -0.153 4.153 17 C -0.067 4.067 18 C -0.147 4.147 19 C 0.128 3.872 20 N -0.515 5.515 21 H 0.436 0.564 22 N -0.253 5.253 23 C 0.087 3.913 24 C -0.161 4.161 25 C 0.043 3.957 26 H 0.265 0.735 27 H 0.376 0.624 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.195 0.805 38 H 0.065 0.935 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.087 -9.537 7.793 14.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.722 3.278 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.569 4.569 8 H 0.075 0.925 9 C 0.216 3.784 10 O -0.389 6.389 11 C -0.166 4.166 12 C -0.099 4.099 13 N -0.222 5.222 14 C -0.052 4.052 15 C -0.034 4.034 16 C -0.174 4.174 17 C -0.087 4.087 18 C -0.170 4.170 19 C 0.012 3.988 20 N -0.229 5.229 21 H 0.280 0.720 22 N -0.066 5.066 23 C -0.111 4.111 24 C -0.170 4.170 25 C -0.084 4.084 26 H 0.075 0.925 27 H 0.225 0.775 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.212 0.788 38 H 0.083 0.917 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.027 -9.922 6.532 14.337 hybrid contribution 0.339 2.090 1.521 2.607 sum 8.366 -7.832 8.054 14.007 Atomic orbital electron populations 1.69741 1.05809 1.27116 1.50748 1.24963 0.94931 0.99196 0.93964 0.86506 0.80193 0.83457 0.77663 1.19864 1.20766 1.20944 1.21605 0.93390 0.90855 1.51038 0.92487 1.19343 0.86620 0.90543 0.81905 1.86147 1.51372 1.56141 1.45196 1.22891 1.01742 0.91541 1.00437 1.23006 0.96589 0.96825 0.93529 1.65184 1.17443 1.11985 1.27571 1.21487 0.91720 0.95546 0.96422 1.19921 0.93251 0.96190 0.94028 1.20572 0.99584 1.03844 0.93390 1.20655 0.92403 0.95998 0.99691 1.19730 0.99663 1.06700 0.90894 1.18794 0.89311 0.98033 0.92655 1.45885 1.16457 1.56427 1.04175 0.71993 1.76553 1.16092 1.14519 0.99449 1.25138 0.91588 0.97965 0.96383 1.19664 0.95865 1.08241 0.93185 1.23562 0.95575 0.90748 0.98536 0.92524 0.77525 0.91663 0.92318 0.94510 0.91913 0.90340 0.90039 0.85825 0.85604 0.86073 0.78800 0.91745 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 11.02 55.43 0.61 -23.67 16 2 C 0.07 1.93 5.28 -17.82 -0.09 1.84 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.53 -14.59 8.14 -34.44 -0.28 -14.87 16 8 H 0.06 1.61 7.78 -52.48 -0.41 1.20 16 9 C 0.26 6.46 0.95 -89.91 -0.09 6.38 16 10 O -0.58 -15.52 13.09 -35.23 -0.46 -15.98 16 11 C -0.13 -2.98 5.26 -25.37 -0.13 -3.11 16 12 C 0.03 0.55 6.45 -2.76 -0.02 0.53 16 13 N -0.50 -9.52 5.54 -231.89 -1.28 -10.80 16 14 C 0.08 1.15 5.62 -4.97 -0.03 1.13 16 15 C -0.03 -0.45 3.99 -104.62 -0.42 -0.87 16 16 C -0.15 -2.12 8.30 -39.95 -0.33 -2.45 16 17 C -0.07 -0.84 9.96 -39.91 -0.40 -1.24 16 18 C -0.15 -1.93 10.03 -39.79 -0.40 -2.33 16 19 C 0.13 1.93 7.34 -84.17 -0.62 1.31 16 20 N -0.51 -7.34 7.37 32.36 0.24 -7.10 16 21 H 0.44 4.76 8.96 -182.77 -1.64 3.12 16 22 N -0.25 -4.06 12.55 31.87 0.40 -3.66 16 23 C 0.09 1.37 10.44 -15.15 -0.16 1.21 16 24 C -0.16 -2.58 4.21 -105.20 -0.44 -3.03 16 25 C 0.04 0.93 4.17 -1.90 -0.01 0.92 16 26 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.38 10.12 7.48 45.56 0.34 10.46 16 28 H 0.06 1.60 7.99 -51.93 -0.41 1.19 16 29 H 0.06 1.45 7.84 -51.93 -0.41 1.05 16 30 H 0.04 0.65 5.52 -51.93 -0.29 0.36 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.03 7.94 -51.93 -0.41 0.62 16 33 H 0.08 1.12 8.06 -51.93 -0.42 0.70 16 34 H 0.12 1.50 7.46 -52.49 -0.39 1.11 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.20 2.65 7.66 -52.49 -0.40 2.24 16 38 H 0.06 1.42 4.31 -51.93 -0.22 1.19 16 39 H 0.07 1.49 7.54 -51.93 -0.39 1.10 16 LS Contribution 311.66 15.07 4.70 4.70 Total: -1.00 -30.62 311.66 -9.69 -40.31 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -5.46 Total: 14.54 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -3.41 Total: -14.58 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.03 Total: -45.23 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.46 Total: -15.98 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.62 -9.69 -40.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600166622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.056 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds