Wall clock time and date at job start Tue Mar 31 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 120.00009 * 2 1 4 4 H 1.48494 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46926 * 300.00681 * 3 2 1 6 6 H 1.48499 * 109.46605 * 60.00025 * 3 2 1 7 7 C 1.37873 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00416 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00126 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.78343 * 61.79738 * 9 7 2 11 11 C 1.54601 * 110.72293 * 298.54914 * 9 7 2 12 12 C 1.53989 * 105.13919 * 219.68083 * 11 9 7 13 13 N 1.47904 * 107.05779 * 358.77693 * 12 11 9 14 14 C 1.46900 * 111.00167 * 145.84777 * 13 12 11 15 15 C 1.50708 * 109.46795 * 286.62943 * 14 13 12 16 16 C 1.36503 * 120.18242 * 94.98837 * 15 14 13 17 17 C 1.38921 * 120.62591 * 179.66231 * 16 15 14 18 18 C 1.36625 * 120.81372 * 0.65014 * 17 16 15 19 19 C 1.39247 * 119.85757 * 359.66625 * 18 17 16 20 20 N 1.37040 * 133.86015 * 180.02562 * 19 18 17 21 21 H 0.96998 * 125.45991 * 359.94345 * 20 19 18 22 22 N 1.39880 * 109.07696 * 179.97438 * 20 19 18 23 23 C 1.30236 * 110.09443 * 0.02562 * 22 20 19 24 24 C 1.39903 * 120.18104 * 275.26564 * 15 14 13 25 25 C 1.48534 * 105.82377 * 25.32827 * 13 12 11 26 26 H 0.96997 * 120.00295 * 359.97438 * 1 2 3 27 27 H 0.96705 * 114.00145 * 298.20951 * 10 9 7 28 28 H 1.09000 * 110.30900 * 100.76509 * 11 9 7 29 29 H 1.08993 * 110.30693 * 338.59753 * 11 9 7 30 30 H 1.08996 * 109.91736 * 118.12351 * 12 11 9 31 31 H 1.09004 * 109.91990 * 239.22619 * 12 11 9 32 32 H 1.09001 * 109.47353 * 46.62526 * 14 13 12 33 33 H 1.08999 * 109.47435 * 166.63201 * 14 13 12 34 34 H 1.08001 * 119.68601 * 359.97438 * 16 15 14 35 35 H 1.07999 * 119.59422 * 180.29761 * 17 16 15 36 36 H 1.08001 * 120.07163 * 179.69013 * 18 17 16 37 37 H 1.08001 * 126.10693 * 180.02562 * 23 22 20 38 38 H 1.08998 * 110.66458 * 79.22752 * 25 13 12 39 39 H 1.08998 * 110.66776 * 202.19477 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 0.4504 -2.6224 -1.1777 11 6 0.3797 -2.6277 1.2699 12 6 0.5077 -4.1014 1.6980 13 7 1.3772 -4.7678 0.7043 14 6 2.1994 -5.8076 1.3375 15 6 3.2885 -5.1595 2.1530 16 6 3.1105 -4.9462 3.4895 17 6 4.1110 -4.3559 4.2514 18 6 5.2879 -3.9644 3.6786 19 6 5.4957 -4.1632 2.3161 20 7 6.5344 -3.8916 1.4645 21 1 7.3726 -3.4726 1.7149 22 7 6.1918 -4.3150 0.1760 23 6 4.9975 -4.8344 0.1785 24 6 4.4852 -4.7679 1.5433 25 6 2.2273 -3.6957 0.1262 26 1 -0.4850 0.8400 0.0004 27 1 -0.2296 -1.9402 -1.2640 28 1 -0.6591 -2.3889 1.0419 29 1 0.7560 -1.9717 2.0548 30 1 0.9603 -4.1626 2.6876 31 1 -0.4757 -4.5715 1.7098 32 1 1.5740 -6.4195 1.9876 33 1 2.6471 -6.4359 0.5675 34 1 2.1850 -5.2438 3.9600 35 1 3.9542 -4.1994 5.3084 36 1 6.0557 -3.5021 4.2813 37 1 4.4792 -5.2424 -0.6767 38 1 3.0494 -3.4518 0.7990 39 1 2.6069 -3.9911 -0.8519 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600166622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:12 Heat of formation + Delta-G solvation = 27.653825 kcal Electronic energy + Delta-G solvation = -23631.574447 eV Core-core repulsion = 20346.533355 eV Total energy + Delta-G solvation = -3285.041093 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.41045 -40.17159 -38.20432 -36.50937 -34.16886 -33.72758 -31.93517 -30.80756 -30.13318 -29.56369 -27.22308 -25.56611 -23.60396 -23.05298 -22.56444 -21.46214 -20.93156 -19.03011 -18.43554 -17.69119 -16.99351 -16.76970 -16.40261 -16.28006 -15.74938 -15.58031 -15.56855 -14.86939 -14.75447 -14.49746 -14.15791 -13.52202 -13.41778 -13.17185 -12.91575 -12.79496 -12.63652 -12.53896 -12.33388 -12.16845 -12.13503 -12.00647 -11.89485 -11.56699 -11.09084 -11.00362 -10.59731 -10.06907 -9.54138 -9.22487 -8.85360 -8.22312 -6.36671 -0.02152 0.58153 1.32440 1.36128 1.45974 1.52462 1.80896 2.34862 2.81279 3.02292 3.31302 3.64117 3.70600 3.86816 4.00844 4.05170 4.19808 4.24551 4.32385 4.43961 4.51718 4.58417 4.79193 4.80997 4.90844 4.96280 4.99606 5.07044 5.16167 5.32348 5.39216 5.50641 5.52986 5.59699 5.63684 5.80761 5.94970 5.97304 6.22756 6.34764 6.39823 6.60745 6.68456 7.34620 7.51017 8.83119 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.006943 C = 0.005960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.049289 B = 4032.099220 C = 4697.097932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.034 3.966 3 Si 0.950 3.050 4 H -0.279 1.279 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.554 4.554 8 H 0.039 0.961 9 C 0.237 3.763 10 O -0.590 6.590 11 C -0.118 4.118 12 C 0.037 3.963 13 N -0.507 5.507 14 C 0.078 3.922 15 C -0.047 4.047 16 C -0.157 4.157 17 C -0.067 4.067 18 C -0.150 4.150 19 C 0.110 3.890 20 N -0.510 5.510 21 H 0.448 0.552 22 N -0.275 5.275 23 C 0.075 3.925 24 C -0.184 4.184 25 C 0.060 3.940 26 H 0.268 0.732 27 H 0.370 0.630 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.144 0.856 35 H 0.160 0.840 36 H 0.149 0.851 37 H 0.204 0.796 38 H 0.063 0.937 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.366 -9.986 9.674 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.167 4.167 3 Si 0.776 3.224 4 H -0.204 1.204 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.592 4.592 8 H 0.058 0.942 9 C 0.197 3.803 10 O -0.397 6.397 11 C -0.157 4.157 12 C -0.091 4.091 13 N -0.228 5.228 14 C -0.050 4.050 15 C -0.052 4.052 16 C -0.177 4.177 17 C -0.087 4.087 18 C -0.172 4.172 19 C -0.006 4.006 20 N -0.227 5.227 21 H 0.294 0.706 22 N -0.089 5.089 23 C -0.122 4.122 24 C -0.192 4.192 25 C -0.068 4.068 26 H 0.078 0.922 27 H 0.218 0.782 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.161 0.839 35 H 0.178 0.822 36 H 0.167 0.833 37 H 0.221 0.779 38 H 0.081 0.919 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.316 -10.382 8.421 15.743 hybrid contribution 0.276 2.228 0.978 2.449 sum 8.592 -8.153 9.400 15.121 Atomic orbital electron populations 1.69811 1.06535 1.27903 1.50462 1.25585 0.95769 1.01794 0.93570 0.85646 0.78652 0.80103 0.78019 1.20418 1.20234 1.19956 1.21781 0.92759 0.92628 1.52050 0.94230 1.19629 0.87361 0.91297 0.82020 1.86144 1.51378 1.55845 1.46344 1.22666 0.99828 0.94254 0.98977 1.22930 0.97799 0.93901 0.94461 1.65109 1.17800 1.11501 1.28438 1.21578 0.91795 0.94422 0.97170 1.19969 0.93134 0.97233 0.94815 1.20933 1.00676 1.03118 0.92982 1.21095 0.91629 0.94701 1.01315 1.20161 1.00690 1.06112 0.90227 1.19176 0.89334 0.98414 0.93640 1.45899 1.16975 1.56241 1.03599 0.70601 1.76471 1.16567 1.15224 1.00637 1.25374 0.91704 0.98109 0.97042 1.19909 0.96796 1.09156 0.93356 1.23269 0.94880 0.90305 0.98314 0.92209 0.78223 0.93597 0.94362 0.92355 0.90373 0.87762 0.89050 0.83879 0.82237 0.83321 0.77944 0.91949 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.62 11.02 21.44 0.24 -49.38 16 2 C 0.03 1.83 5.28 84.65 0.45 2.27 16 3 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.55 -31.00 8.14 25.60 0.21 -30.80 16 8 H 0.04 2.29 7.78 -2.91 -0.02 2.27 16 9 C 0.24 12.10 0.95 -10.33 -0.01 12.09 16 10 O -0.59 -32.13 13.09 -148.98 -1.95 -34.08 16 11 C -0.12 -5.55 5.26 31.47 0.17 -5.38 16 12 C 0.04 1.35 6.45 86.44 0.56 1.91 16 13 N -0.51 -18.56 5.54 -887.56 -4.91 -23.47 16 14 C 0.08 2.17 5.62 85.56 0.48 2.65 16 15 C -0.05 -1.35 3.99 -19.86 -0.08 -1.43 16 16 C -0.16 -3.86 8.30 22.03 0.18 -3.67 16 17 C -0.07 -1.46 9.96 22.06 0.22 -1.24 16 18 C -0.15 -3.52 10.03 22.13 0.22 -3.30 16 19 C 0.11 3.20 7.34 39.21 0.29 3.48 16 20 N -0.51 -14.29 7.37 -51.53 -0.38 -14.67 16 21 H 0.45 9.47 8.96 -213.46 -1.91 7.56 16 22 N -0.28 -8.89 12.55 -53.09 -0.67 -9.56 16 23 C 0.08 2.38 10.44 86.92 0.91 3.29 16 24 C -0.18 -5.74 4.21 -20.24 -0.09 -5.82 16 25 C 0.06 2.59 4.17 86.65 0.36 2.96 16 26 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 27 H 0.37 20.45 7.48 -74.05 -0.55 19.90 16 28 H 0.05 2.27 7.99 -2.39 -0.02 2.26 16 29 H 0.04 1.90 7.84 -2.39 -0.02 1.88 16 30 H 0.06 1.88 5.52 -2.39 -0.01 1.87 16 31 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 32 H 0.10 2.37 7.94 -2.39 -0.02 2.35 16 33 H 0.09 2.35 8.06 -2.39 -0.02 2.33 16 34 H 0.14 2.89 7.46 -2.91 -0.02 2.87 16 35 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 37 H 0.20 5.66 7.66 -2.91 -0.02 5.64 16 38 H 0.06 2.75 4.31 -2.39 -0.01 2.74 16 39 H 0.06 2.58 7.54 -2.39 -0.02 2.57 16 Total: -1.00 -65.87 311.66 -3.15 -69.02 By element: Atomic # 1 Polarization: 40.77 SS G_CDS: -1.37 Total: 39.40 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 3.87 Total: -22.99 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -5.72 Total: -97.08 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -1.95 Total: -34.08 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -65.87 -3.15 -69.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600166622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.670 kcal (2) G-P(sol) polarization free energy of solvation -65.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds