Wall clock time and date at job start Tue Mar 31 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39261 * 120.58478 * 117.32584 * 3 2 1 5 5 C 1.39555 * 118.96683 * 180.02562 * 4 3 2 6 6 C 1.35682 * 120.13917 * 0.02562 * 5 4 3 7 7 N 1.35527 * 121.22411 * 359.72301 * 6 5 4 8 8 C 1.46502 * 119.47563 * 180.30989 * 7 6 5 9 9 N 1.46903 * 109.46902 * 270.25220 * 8 7 6 10 10 C 1.46847 * 110.99802 * 30.79174 * 9 8 7 11 11 C 1.53037 * 109.52262 * 185.83864 * 10 9 8 12 12 C 1.53124 * 109.28065 * 300.82139 * 11 10 9 13 13 C 1.53125 * 109.15775 * 57.65151 * 12 11 10 14 14 H 1.08998 * 109.53464 * 62.30949 * 13 12 11 15 15 C 1.50700 * 109.50143 * 182.40708 * 13 12 11 16 16 H 1.07991 * 120.00018 * 119.80187 * 15 13 12 17 17 C 1.37876 * 119.99786 * 299.80311 * 15 13 12 18 18 N 1.31512 * 120.00138 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99884 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46972 * 90.00271 * 19 17 15 21 21 H 1.48503 * 109.47205 * 210.00028 * 19 17 15 22 22 H 1.48494 * 109.47277 * 330.00447 * 19 17 15 23 23 C 1.46846 * 111.00042 * 155.00127 * 9 8 7 24 24 C 1.34650 * 121.04616 * 0.56316 * 7 6 5 25 25 O 1.21903 * 120.10885 * 179.71637 * 24 7 6 26 26 H 1.07997 * 120.51954 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.93238 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.39133 * 180.02562 * 6 5 4 29 29 H 1.09003 * 109.47281 * 30.25205 * 8 7 6 30 30 H 1.09002 * 109.46865 * 150.25626 * 8 7 6 31 31 H 1.08998 * 109.46638 * 305.85268 * 10 9 8 32 32 H 1.08998 * 109.46457 * 65.82623 * 10 9 8 33 33 H 1.09003 * 109.50330 * 180.88336 * 11 10 9 34 34 H 1.09001 * 109.50294 * 60.76063 * 11 10 9 35 35 H 1.09002 * 109.52190 * 297.75390 * 12 11 10 36 36 H 1.08995 * 109.52623 * 177.55984 * 12 11 10 37 37 H 0.97009 * 120.00382 * 180.02562 * 18 17 15 38 38 H 1.08997 * 109.46164 * 294.17866 * 23 9 8 39 39 H 1.09002 * 109.46033 * 54.14731 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2763 0.5513 -1.0651 5 6 4.6713 0.5333 -1.0303 6 6 5.3194 -0.0145 0.0283 7 7 4.6368 -0.5478 1.0707 8 6 5.3755 -1.1233 2.1973 9 7 5.6283 -2.5475 1.9407 10 6 5.7667 -2.8064 0.5018 11 6 5.8830 -4.3135 0.2623 12 6 7.1017 -4.8527 1.0164 13 6 6.9555 -4.5273 2.5056 14 1 6.0722 -5.0272 2.9029 15 6 8.1786 -5.0025 3.2467 16 1 8.7902 -4.2961 3.7883 17 6 8.5168 -6.3391 3.2334 18 7 7.7724 -7.1992 2.5734 19 14 10.0333 -6.9280 4.1515 20 1 9.6599 -7.2917 5.5420 21 1 10.5980 -8.1167 3.4635 22 1 11.0475 -5.8437 4.1789 23 6 6.8081 -3.0141 2.6800 24 6 3.2904 -0.5614 1.0849 25 8 2.6938 -1.0501 2.0290 26 1 2.7542 0.9847 -1.9053 27 1 5.2362 0.9557 -1.8482 28 1 6.3993 -0.0216 0.0429 29 1 6.3251 -0.6010 2.3140 30 1 4.7880 -1.0172 3.1092 31 1 4.8917 -2.4219 -0.0222 32 1 6.6616 -2.3092 0.1277 33 1 6.0014 -4.5043 -0.8043 34 1 4.9825 -4.8100 0.6237 35 1 8.0065 -4.3848 0.6285 36 1 7.1635 -5.9328 0.8839 37 1 8.0101 -8.1396 2.5642 38 1 7.6981 -2.5158 2.2957 39 1 6.6895 -2.7804 3.7381 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853523082.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:58 Heat of formation + Delta-G solvation = 21.308707 kcal Electronic energy + Delta-G solvation = -22584.909449 eV Core-core repulsion = 19299.593212 eV Total energy + Delta-G solvation = -3285.316238 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.66468 -39.72230 -38.11190 -37.73178 -36.04944 -34.63544 -32.97221 -31.63535 -31.18417 -27.73653 -26.93072 -25.82079 -24.35909 -23.52238 -22.68093 -20.42002 -20.31601 -18.63463 -18.44658 -17.88381 -17.56386 -16.98129 -16.45272 -15.84065 -15.59504 -15.27493 -15.09323 -14.94041 -14.58664 -14.53932 -14.26802 -14.02980 -13.86568 -13.45615 -13.39651 -13.18319 -13.06110 -12.90676 -12.83814 -12.56676 -12.46778 -11.86508 -11.72616 -11.39303 -11.24953 -11.11236 -10.90259 -10.65131 -10.36944 -9.25117 -8.98187 -8.05984 -6.20433 -0.56504 0.88425 1.24122 1.43871 1.45372 1.54472 1.79795 1.86710 2.44525 2.73267 3.00599 3.07884 3.22154 3.60660 3.75383 3.92250 3.99997 4.12221 4.21208 4.31406 4.38429 4.47898 4.59691 4.70198 4.74776 4.85287 4.95787 5.00242 5.06145 5.16626 5.18514 5.37714 5.50510 5.54790 5.66036 5.90477 5.96354 6.12330 6.19451 6.22617 6.43772 6.52211 6.90243 6.94098 7.48351 8.98747 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.032400 B = 0.003680 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.978372 B = 7606.374710 C = 7718.464546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C 0.297 3.703 3 C -0.221 4.221 4 C 0.098 3.902 5 C -0.223 4.223 6 C 0.177 3.823 7 N -0.490 5.490 8 C 0.264 3.736 9 N -0.573 5.573 10 C 0.067 3.933 11 C -0.112 4.112 12 C -0.100 4.100 13 C 0.050 3.950 14 H -0.017 1.017 15 C -0.531 4.531 16 H 0.060 0.940 17 C 0.011 3.989 18 N -0.919 5.919 19 Si 0.954 3.046 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.261 1.261 23 C 0.087 3.913 24 C 0.530 3.470 25 O -0.587 6.587 26 H 0.182 0.818 27 H 0.209 0.791 28 H 0.209 0.791 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.029 0.971 35 H 0.039 0.961 36 H 0.051 0.949 37 H 0.258 0.742 38 H 0.047 0.953 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.424 19.613 -11.929 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.160 5.160 2 C -0.016 4.016 3 C -0.229 4.229 4 C 0.073 3.927 5 C -0.245 4.245 6 C 0.047 3.953 7 N -0.197 5.197 8 C 0.054 3.946 9 N -0.301 5.301 10 C -0.061 4.061 11 C -0.150 4.150 12 C -0.139 4.139 13 C 0.031 3.969 14 H 0.001 0.999 15 C -0.569 4.569 16 H 0.078 0.922 17 C -0.187 4.187 18 N -0.558 5.558 19 Si 0.780 3.220 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.185 1.185 23 C -0.040 4.040 24 C 0.331 3.669 25 O -0.471 6.471 26 H 0.199 0.801 27 H 0.226 0.774 28 H 0.226 0.774 29 H 0.129 0.871 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.106 18.841 -11.111 21.873 hybrid contribution 1.240 -0.877 0.795 1.715 sum 1.134 17.964 -10.316 20.746 Atomic orbital electron populations 1.81185 1.13294 1.11988 1.09571 1.25290 0.92354 0.91799 0.92128 1.16818 0.84846 1.19611 1.01637 1.22418 0.94925 0.82621 0.92778 1.21197 0.92990 1.08866 1.01446 1.23273 1.01243 0.86188 0.84576 1.45622 1.07331 1.47045 1.19737 1.22723 0.96608 0.86780 0.88472 1.62157 1.41680 1.15946 1.10313 1.22074 1.00263 0.96425 0.87292 1.21580 0.98133 0.95559 0.99734 1.21431 0.95028 1.01108 0.96304 1.18602 0.94308 0.90660 0.93366 0.99882 1.21522 1.10693 0.93306 1.31409 0.92162 1.25750 0.99514 0.97222 0.96255 1.70063 1.39993 1.02743 1.43028 0.85614 0.80031 0.77970 0.78358 1.20802 1.21290 1.18519 1.21991 0.88369 0.96805 0.96820 1.16960 0.81660 0.80722 0.87573 1.90971 1.67991 1.49650 1.38472 0.80078 0.77441 0.77444 0.87139 0.89165 0.91246 0.91982 0.90751 0.95206 0.94203 0.93008 0.93266 0.93504 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -16.28 18.54 19.00 0.35 -15.93 16 2 C 0.30 8.56 14.94 88.33 1.32 9.88 16 3 C -0.22 -4.75 5.79 -20.87 -0.12 -4.87 16 4 C 0.10 0.83 9.88 22.83 0.23 1.05 16 5 C -0.22 -0.65 9.99 22.00 0.22 -0.43 16 6 C 0.18 1.31 8.04 83.53 0.67 1.98 16 7 N -0.49 -9.37 1.61 -660.00 -1.06 -10.43 16 8 C 0.26 6.12 5.83 170.80 1.00 7.11 16 9 N -0.57 -18.32 4.91 -908.71 -4.46 -22.78 16 10 C 0.07 1.85 4.21 86.33 0.36 2.21 16 11 C -0.11 -4.05 6.09 30.65 0.19 -3.86 16 12 C -0.10 -4.48 5.03 30.68 0.15 -4.32 16 13 C 0.05 2.39 2.26 -11.49 -0.03 2.37 16 14 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 15 C -0.53 -27.85 8.56 25.60 0.22 -27.63 16 16 H 0.06 3.01 7.74 -2.92 -0.02 2.99 16 17 C 0.01 0.60 5.30 84.65 0.45 1.05 16 18 N -0.92 -52.94 11.36 21.45 0.24 -52.70 16 19 Si 0.95 42.37 29.54 68.60 2.03 44.39 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 23 C 0.09 3.19 4.52 86.32 0.39 3.58 16 24 C 0.53 14.62 7.16 85.18 0.61 15.23 16 25 O -0.59 -23.35 16.09 -5.00 -0.08 -23.43 16 26 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 27 H 0.21 -1.26 8.06 -2.91 -0.02 -1.28 16 28 H 0.21 -0.06 7.83 -2.91 -0.02 -0.08 16 29 H 0.11 1.63 7.72 -2.39 -0.02 1.61 16 30 H 0.09 2.55 7.38 -2.39 -0.02 2.54 16 31 H 0.07 1.76 6.09 -2.39 -0.01 1.75 16 32 H 0.06 1.30 7.62 -2.39 -0.02 1.28 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.05 2.72 6.16 -2.39 -0.01 2.71 16 37 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.06 2.23 8.12 -2.39 -0.02 2.22 16 Total: -1.00 -82.12 324.77 3.74 -78.39 By element: Atomic # 1 Polarization: -1.91 SS G_CDS: 1.06 Total: -0.85 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 5.66 Total: 3.34 kcal Atomic # 7 Polarization: -96.92 SS G_CDS: -4.92 Total: -101.84 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.08 Total: -23.43 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -82.12 3.74 -78.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853523082.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.696 kcal (2) G-P(sol) polarization free energy of solvation -82.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds