Wall clock time and date at job start Tue Mar 31 2020 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00377 * 2 1 4 4 H 1.48500 * 109.47043 * 239.99808 * 3 2 1 5 5 H 1.48506 * 109.46889 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47321 * 119.99379 * 3 2 1 7 7 C 1.37884 * 120.00132 * 179.97438 * 2 1 3 8 8 C 1.51260 * 120.85280 * 180.02562 * 7 2 1 9 9 C 1.53230 * 108.53917 * 231.32755 * 8 7 2 10 10 C 1.52961 * 109.40365 * 305.37305 * 9 8 7 11 11 H 1.08999 * 109.41376 * 303.48969 * 10 9 8 12 12 N 1.46497 * 109.41259 * 183.69926 * 10 9 8 13 13 C 1.38462 * 119.99745 * 84.64928 * 12 10 9 14 14 C 1.39400 * 119.54544 * 359.97438 * 13 12 10 15 15 C 1.36893 * 119.46150 * 180.02562 * 14 13 12 16 16 C 1.40253 * 118.41775 * 359.97438 * 15 14 13 17 17 C 1.39667 * 118.97230 * 0.02562 * 16 15 14 18 18 N 1.31412 * 120.74354 * 359.71867 * 17 16 15 19 19 C 1.50965 * 106.23611 * 180.02562 * 17 16 15 20 20 N 1.46724 * 106.24416 * 359.97438 * 19 17 16 21 21 C 1.34431 * 108.72482 * 0.02562 * 20 19 17 22 22 O 1.21590 * 124.84838 * 180.02562 * 21 20 19 23 23 C 1.52966 * 109.81494 * 63.59567 * 10 9 8 24 24 C 1.51270 * 120.84496 * 0.02562 * 7 2 1 25 25 H 0.97000 * 119.99756 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.62703 * 351.04265 * 8 7 2 27 27 H 1.09004 * 109.63001 * 111.61424 * 8 7 2 28 28 H 1.08994 * 109.48658 * 185.38961 * 9 8 7 29 29 H 1.09008 * 109.48138 * 65.35034 * 9 8 7 30 30 H 0.97002 * 120.00574 * 264.64334 * 12 10 9 31 31 H 1.08002 * 120.26681 * 0.02562 * 14 13 12 32 32 H 1.08000 * 120.78917 * 180.02562 * 15 14 13 33 33 H 1.09000 * 110.10047 * 119.19370 * 19 17 16 34 34 H 1.08998 * 110.09988 * 240.74310 * 19 17 16 35 35 H 0.97005 * 125.63343 * 179.97438 * 20 19 17 36 36 H 1.08997 * 109.48191 * 56.38593 * 23 10 9 37 37 H 1.09000 * 109.48031 * 176.41956 * 23 10 9 38 38 H 1.08999 * 109.63158 * 8.95697 * 24 7 2 39 39 H 1.09000 * 109.62411 * 248.38769 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 6 3.5170 -1.2166 0.0011 9 6 3.9911 -2.1318 -1.1327 10 6 3.3402 -3.5077 -0.9811 11 1 3.5738 -3.9124 0.0037 12 7 3.8605 -4.4088 -2.0123 13 6 5.0496 -5.0867 -1.8034 14 6 5.7441 -4.9044 -0.6086 15 6 6.9197 -5.5752 -0.4041 16 6 7.3853 -6.4294 -1.4144 17 6 6.6365 -6.5629 -2.5857 18 7 5.5096 -5.9049 -2.7413 19 6 7.3901 -7.5361 -3.4598 20 7 8.5867 -7.9243 -2.7048 21 6 8.5789 -7.2823 -1.5237 22 8 9.4364 -7.3904 -0.6685 23 6 1.8232 -3.3832 -1.1328 24 6 1.2676 -2.5152 0.0005 25 1 -0.4850 0.8401 -0.0004 26 1 3.8982 -0.2080 -0.1588 27 1 3.8772 -1.5999 0.9558 28 1 5.0751 -2.2354 -1.0872 29 1 3.7071 -1.6990 -2.0921 30 1 3.3720 -4.5305 -2.8414 31 1 5.3577 -4.2393 0.1496 32 1 7.4751 -5.4502 0.5137 33 1 6.7740 -8.4121 -3.6626 34 1 7.6763 -7.0553 -4.3952 35 1 9.2700 -8.5427 -3.0075 36 1 1.5906 -2.9210 -2.0921 37 1 1.3709 -4.3739 -1.0874 38 1 0.2037 -2.3410 -0.1597 39 1 1.4192 -3.0189 0.9552 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167840608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:13 Heat of formation + Delta-G solvation = 4.882101 kcal Electronic energy + Delta-G solvation = -22122.661912 eV Core-core repulsion = 18836.633363 eV Total energy + Delta-G solvation = -3286.028549 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.34008 -39.24449 -37.56083 -36.09180 -34.23662 -32.62735 -31.81132 -30.06349 -29.44916 -27.33114 -26.98235 -23.95234 -22.88396 -21.69454 -21.23553 -20.54199 -19.59826 -17.91238 -17.22815 -16.82308 -16.10422 -16.05715 -15.91011 -14.58197 -14.55358 -14.21717 -14.10659 -13.88335 -13.49358 -13.27972 -13.11387 -12.86202 -12.60615 -12.39934 -12.19767 -11.75845 -11.23809 -11.02700 -10.78994 -10.48166 -10.34321 -10.27889 -10.07730 -9.95804 -9.68211 -9.32883 -9.29302 -9.11459 -8.83441 -8.58668 -7.61499 -6.21758 -4.14063 0.82621 1.30248 2.82082 2.84955 3.16957 3.22396 3.29605 3.30045 3.89200 3.90539 4.29044 4.36900 4.81102 4.91396 5.04539 5.05969 5.10441 5.29846 5.39653 5.58708 5.63545 5.88269 5.90369 6.04660 6.28281 6.34821 6.41255 6.53546 6.57328 6.67383 6.68998 6.76388 6.84503 6.90376 7.16393 7.24498 7.51117 7.55703 7.61658 7.73444 8.08302 8.12293 8.23891 8.83497 9.42526 10.87671 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.034103 B = 0.003450 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.854308 B = 8113.831169 C = 8488.702846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.495 4.495 8 C -0.009 4.009 9 C -0.121 4.121 10 C 0.156 3.844 11 H 0.077 0.923 12 N -0.698 5.698 13 C 0.447 3.553 14 C -0.245 4.245 15 C 0.040 3.960 16 C -0.300 4.300 17 C 0.190 3.810 18 N -0.543 5.543 19 C 0.157 3.843 20 N -0.729 5.729 21 C 0.575 3.425 22 O -0.539 6.539 23 C -0.114 4.114 24 C 0.014 3.986 25 H 0.266 0.734 26 H 0.028 0.972 27 H 0.020 0.980 28 H 0.038 0.962 29 H 0.057 0.943 30 H 0.403 0.597 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.424 0.576 36 H 0.057 0.943 37 H 0.039 0.961 38 H 0.062 0.938 39 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.503 -12.092 -6.654 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.719 3.281 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.514 4.514 8 C -0.047 4.047 9 C -0.160 4.160 10 C 0.053 3.947 11 H 0.095 0.905 12 N -0.324 5.324 13 C 0.208 3.792 14 C -0.270 4.270 15 C 0.014 3.986 16 C -0.310 4.310 17 C 0.047 3.953 18 N -0.262 5.262 19 C 0.031 3.969 20 N -0.387 5.387 21 C 0.364 3.636 22 O -0.417 6.417 23 C -0.152 4.152 24 C -0.024 4.024 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.239 0.761 31 H 0.165 0.835 32 H 0.156 0.844 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.266 0.734 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 10.099 -11.895 -6.759 17.005 hybrid contribution 0.899 0.798 0.092 1.206 sum 10.998 -11.097 -6.666 16.986 Atomic orbital electron populations 1.69809 1.06185 1.27280 1.49152 1.24839 0.94731 0.98628 0.94272 0.86657 0.79442 0.82942 0.79057 1.19971 1.21781 1.19900 1.19992 0.89217 0.91511 1.50685 1.19601 0.96763 0.94725 0.93575 1.22053 0.97119 0.95195 1.01603 1.21289 0.95440 0.88600 0.89351 0.90505 1.45303 1.20348 1.44920 1.21793 1.18435 0.86353 0.86234 0.88217 1.21263 0.98378 1.07912 0.99496 1.20673 0.92594 0.88638 0.96674 1.20708 1.01423 1.08917 0.99937 1.20971 0.89084 0.92185 0.93069 1.66097 1.15194 1.12499 1.32388 1.20204 0.85746 0.97103 0.93813 1.45737 1.25769 1.48398 1.18812 1.17943 0.85017 0.79283 0.81388 1.90791 1.42015 1.65919 1.42930 1.21936 0.91583 0.98988 1.02743 1.19333 0.98910 0.92657 0.91492 0.92359 0.95374 0.96123 0.94368 0.92432 0.76110 0.83540 0.84393 0.87874 0.87866 0.73431 0.92414 0.94275 0.91897 0.97462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.33 12.73 55.43 0.71 -23.62 16 2 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.89 20.34 26.80 -169.99 -4.56 15.79 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.50 -12.07 5.51 -98.92 -0.55 -12.62 16 8 C -0.01 -0.18 5.59 -27.49 -0.15 -0.33 16 9 C -0.12 -2.21 5.38 -26.63 -0.14 -2.35 16 10 C 0.16 2.61 2.04 -67.97 -0.14 2.47 16 11 H 0.08 1.28 6.43 -51.93 -0.33 0.95 16 12 N -0.70 -10.27 5.22 -53.98 -0.28 -10.55 16 13 C 0.45 6.57 7.61 -155.19 -1.18 5.39 16 14 C -0.25 -3.45 8.70 -39.64 -0.34 -3.80 16 15 C 0.04 0.54 10.17 -39.31 -0.40 0.14 16 16 C -0.30 -4.10 6.28 -105.01 -0.66 -4.76 16 17 C 0.19 2.37 7.56 -82.11 -0.62 1.75 16 18 N -0.54 -7.63 10.39 -8.31 -0.09 -7.72 16 19 C 0.16 1.26 7.76 -4.94 -0.04 1.22 16 20 N -0.73 -6.60 6.41 -62.47 -0.40 -7.00 16 21 C 0.57 7.79 8.33 -12.82 -0.11 7.69 16 22 O -0.54 -9.16 18.05 5.29 0.10 -9.06 16 23 C -0.11 -2.11 5.40 -26.65 -0.14 -2.26 16 24 C 0.01 0.32 5.97 -27.50 -0.16 0.15 16 25 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.03 0.60 5.17 -51.93 -0.27 0.33 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.64 7.62 -51.93 -0.40 0.25 16 29 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 30 H 0.40 5.54 8.72 -40.82 -0.36 5.19 16 31 H 0.15 2.01 6.03 -52.49 -0.32 1.69 16 32 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.42 2.66 8.96 -40.82 -0.37 2.30 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 1.59 7.07 -51.93 -0.37 1.22 16 39 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 316.05 15.07 4.76 4.76 Total: -1.00 -29.65 316.05 -9.42 -39.07 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -4.92 Total: 3.71 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -4.74 Total: -5.36 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.06 Total: -48.90 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.10 Total: -9.06 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.56 Total: 15.79 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.65 -9.42 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167840608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.951 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds