Wall clock time and date at job start Tue Mar 31 2020 05:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00377 * 2 1 4 4 H 1.48500 * 109.47043 * 239.99808 * 3 2 1 5 5 H 1.48506 * 109.46889 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47321 * 119.99379 * 3 2 1 7 7 C 1.37884 * 120.00132 * 179.97438 * 2 1 3 8 8 C 1.51260 * 120.85280 * 180.02562 * 7 2 1 9 9 C 1.53230 * 108.53917 * 231.32755 * 8 7 2 10 10 C 1.52961 * 109.40365 * 305.37305 * 9 8 7 11 11 H 1.08999 * 109.41376 * 303.48969 * 10 9 8 12 12 N 1.46497 * 109.41259 * 183.69926 * 10 9 8 13 13 C 1.38462 * 119.99745 * 84.64928 * 12 10 9 14 14 C 1.39400 * 119.54544 * 359.97438 * 13 12 10 15 15 C 1.36893 * 119.46150 * 180.02562 * 14 13 12 16 16 C 1.40253 * 118.41775 * 359.97438 * 15 14 13 17 17 C 1.39667 * 118.97230 * 0.02562 * 16 15 14 18 18 N 1.31412 * 120.74354 * 359.71867 * 17 16 15 19 19 C 1.50965 * 106.23611 * 180.02562 * 17 16 15 20 20 N 1.46724 * 106.24416 * 359.97438 * 19 17 16 21 21 C 1.34431 * 108.72482 * 0.02562 * 20 19 17 22 22 O 1.21590 * 124.84838 * 180.02562 * 21 20 19 23 23 C 1.52966 * 109.81494 * 63.59567 * 10 9 8 24 24 C 1.51270 * 120.84496 * 0.02562 * 7 2 1 25 25 H 0.97000 * 119.99756 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.62703 * 351.04265 * 8 7 2 27 27 H 1.09004 * 109.63001 * 111.61424 * 8 7 2 28 28 H 1.08994 * 109.48658 * 185.38961 * 9 8 7 29 29 H 1.09008 * 109.48138 * 65.35034 * 9 8 7 30 30 H 0.97002 * 120.00574 * 264.64334 * 12 10 9 31 31 H 1.08002 * 120.26681 * 0.02562 * 14 13 12 32 32 H 1.08000 * 120.78917 * 180.02562 * 15 14 13 33 33 H 1.09000 * 110.10047 * 119.19370 * 19 17 16 34 34 H 1.08998 * 110.09988 * 240.74310 * 19 17 16 35 35 H 0.97005 * 125.63343 * 179.97438 * 20 19 17 36 36 H 1.08997 * 109.48191 * 56.38593 * 23 10 9 37 37 H 1.09000 * 109.48031 * 176.41956 * 23 10 9 38 38 H 1.08999 * 109.63158 * 8.95697 * 24 7 2 39 39 H 1.09000 * 109.62411 * 248.38769 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 6 3.5170 -1.2166 0.0011 9 6 3.9911 -2.1318 -1.1327 10 6 3.3402 -3.5077 -0.9811 11 1 3.5738 -3.9124 0.0037 12 7 3.8605 -4.4088 -2.0123 13 6 5.0496 -5.0867 -1.8034 14 6 5.7441 -4.9044 -0.6086 15 6 6.9197 -5.5752 -0.4041 16 6 7.3853 -6.4294 -1.4144 17 6 6.6365 -6.5629 -2.5857 18 7 5.5096 -5.9049 -2.7413 19 6 7.3901 -7.5361 -3.4598 20 7 8.5867 -7.9243 -2.7048 21 6 8.5789 -7.2823 -1.5237 22 8 9.4364 -7.3904 -0.6685 23 6 1.8232 -3.3832 -1.1328 24 6 1.2676 -2.5152 0.0005 25 1 -0.4850 0.8401 -0.0004 26 1 3.8982 -0.2080 -0.1588 27 1 3.8772 -1.5999 0.9558 28 1 5.0751 -2.2354 -1.0872 29 1 3.7071 -1.6990 -2.0921 30 1 3.3720 -4.5305 -2.8414 31 1 5.3577 -4.2393 0.1496 32 1 7.4751 -5.4502 0.5137 33 1 6.7740 -8.4121 -3.6626 34 1 7.6763 -7.0553 -4.3952 35 1 9.2700 -8.5427 -3.0075 36 1 1.5906 -2.9210 -2.0921 37 1 1.3709 -4.3739 -1.0874 38 1 0.2037 -2.3410 -0.1597 39 1 1.4192 -3.0189 0.9552 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167840608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:12 Heat of formation + Delta-G solvation = -15.656064 kcal Electronic energy + Delta-G solvation = -22123.552513 eV Core-core repulsion = 18836.633363 eV Total energy + Delta-G solvation = -3286.919150 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.31667 -40.35901 -38.91731 -37.17845 -35.63921 -33.82541 -33.33037 -31.60235 -30.69942 -28.72080 -27.97541 -25.07472 -24.23722 -23.29375 -22.60078 -21.52014 -21.08314 -18.99885 -18.33905 -17.98918 -17.57206 -17.04810 -16.90769 -16.42093 -15.78795 -15.34290 -15.16246 -15.08017 -14.79578 -14.45934 -14.33109 -14.11100 -13.99689 -13.91581 -13.55162 -13.34649 -12.78859 -12.71196 -12.50988 -11.99423 -11.89736 -11.66856 -11.42767 -11.25400 -10.98599 -10.81563 -10.55361 -10.51103 -10.32390 -10.15019 -8.75393 -8.17175 -6.10741 -0.20316 0.27885 1.40068 1.42465 1.48890 1.81374 1.85658 2.27277 2.40816 2.85712 2.93109 3.12960 3.45478 3.86050 3.90072 3.96921 4.13942 4.27224 4.33883 4.48424 4.50781 4.71330 4.71851 4.84280 4.91611 4.96261 4.96640 5.06644 5.14822 5.23196 5.25688 5.43953 5.59059 5.64228 5.69170 5.76631 5.83954 5.96126 6.00949 6.33678 6.54783 6.96436 7.01024 7.21341 7.47668 8.93551 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.034103 B = 0.003450 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.854308 B = 8113.831169 C = 8488.702846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.025 3.975 3 Si 0.938 3.062 4 H -0.267 1.267 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.499 4.499 8 C -0.013 4.013 9 C -0.113 4.113 10 C 0.172 3.828 11 H 0.082 0.918 12 N -0.695 5.695 13 C 0.437 3.563 14 C -0.254 4.254 15 C 0.036 3.964 16 C -0.319 4.319 17 C 0.190 3.810 18 N -0.549 5.549 19 C 0.159 3.841 20 N -0.707 5.707 21 C 0.568 3.432 22 O -0.584 6.584 23 C -0.103 4.103 24 C 0.010 3.990 25 H 0.262 0.738 26 H 0.025 0.975 27 H 0.030 0.970 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.409 0.591 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.439 0.561 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.029 0.971 39 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.413 -13.609 -8.153 20.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.519 4.519 8 C -0.051 4.051 9 C -0.152 4.152 10 C 0.068 3.932 11 H 0.100 0.900 12 N -0.322 5.322 13 C 0.199 3.801 14 C -0.279 4.279 15 C 0.010 3.990 16 C -0.328 4.328 17 C 0.047 3.953 18 N -0.268 5.268 19 C 0.035 3.965 20 N -0.364 5.364 21 C 0.357 3.643 22 O -0.465 6.465 23 C -0.141 4.141 24 C -0.028 4.028 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.245 0.755 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.284 0.716 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 12.043 -13.455 -8.310 19.877 hybrid contribution 0.345 1.150 0.544 1.318 sum 12.388 -12.305 -7.766 19.110 Atomic orbital electron populations 1.69945 1.07580 1.27487 1.51957 1.25545 0.95262 1.01562 0.94999 0.85878 0.78362 0.79817 0.79414 1.19215 1.22428 1.19188 1.20644 0.91178 0.91862 1.48196 1.19640 0.94611 0.95552 0.95283 1.21916 0.98286 0.95307 0.99669 1.20905 0.93765 0.88331 0.90241 0.90028 1.44938 1.20770 1.44962 1.21534 1.18532 0.86300 0.86602 0.88700 1.21289 0.98662 1.08404 0.99523 1.20861 0.92500 0.88409 0.97207 1.20963 1.01970 1.09222 1.00656 1.21615 0.88265 0.91974 0.93491 1.66152 1.15779 1.12694 1.32159 1.20543 0.84990 0.97507 0.93467 1.45676 1.26255 1.47231 1.17265 1.18042 0.84525 0.79621 0.82140 1.90768 1.43461 1.67614 1.44704 1.21695 0.93123 0.98924 1.00360 1.19286 0.97178 0.93235 0.93132 0.92843 0.95643 0.95154 0.92510 0.93389 0.75479 0.83392 0.83547 0.84599 0.84672 0.71610 0.93189 0.92368 0.95196 0.97481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.64 12.73 21.45 0.27 -52.37 16 2 C 0.02 1.31 5.46 84.66 0.46 1.77 16 3 Si 0.94 41.95 26.80 68.60 1.84 43.79 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.50 -24.39 5.51 -16.17 -0.09 -24.48 16 8 C -0.01 -0.52 5.59 30.10 0.17 -0.36 16 9 C -0.11 -3.91 5.38 30.66 0.17 -3.75 16 10 C 0.17 5.42 2.04 44.97 0.09 5.51 16 11 H 0.08 2.55 6.43 -2.39 -0.02 2.53 16 12 N -0.70 -18.94 5.22 -324.68 -1.70 -20.63 16 13 C 0.44 11.87 7.61 133.22 1.01 12.89 16 14 C -0.25 -6.68 8.70 22.23 0.19 -6.49 16 15 C 0.04 0.92 10.17 22.44 0.23 1.15 16 16 C -0.32 -8.09 6.28 -20.11 -0.13 -8.21 16 17 C 0.19 4.14 7.56 43.05 0.33 4.47 16 18 N -0.55 -13.90 10.39 -180.19 -1.87 -15.77 16 19 C 0.16 1.85 7.76 85.67 0.66 2.52 16 20 N -0.71 -10.42 6.41 -470.03 -3.01 -13.44 16 21 C 0.57 14.34 8.33 86.63 0.72 15.06 16 22 O -0.58 -19.44 18.05 -4.00 -0.07 -19.51 16 23 C -0.10 -3.71 5.40 30.65 0.17 -3.54 16 24 C 0.01 0.44 5.97 30.09 0.18 0.62 16 25 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 26 H 0.03 1.05 5.17 -2.38 -0.01 1.04 16 27 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.06 1.77 7.62 -2.39 -0.02 1.76 16 29 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.41 10.33 8.72 -92.71 -0.81 9.52 16 31 H 0.15 3.78 6.03 -2.91 -0.02 3.76 16 32 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.14 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.44 3.98 8.96 -92.70 -0.83 3.15 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.03 1.55 7.07 -2.39 -0.02 1.53 16 39 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -65.39 316.05 -0.91 -66.30 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -0.53 Total: 14.46 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 4.16 Total: -2.84 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -6.31 Total: -102.21 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.07 Total: -19.51 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.84 Total: 43.79 kcal Total: -65.39 -0.91 -66.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167840608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.644 kcal (2) G-P(sol) polarization free energy of solvation -65.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds