Wall clock time and date at job start Tue Mar 31 2020 06:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42895 * 114.17025 * 139.67367 * 12 11 10 14 14 C 1.42899 * 114.00481 * 116.15468 * 13 12 11 15 15 C 1.50701 * 109.47741 * 179.97438 * 14 13 12 16 16 N 1.30104 * 124.95136 * 180.02562 * 15 14 13 17 17 C 1.35785 * 109.64299 * 179.97438 * 16 15 14 18 18 C 1.39740 * 133.60563 * 180.02562 * 17 16 15 19 19 C 1.36610 * 119.88819 * 179.97438 * 18 17 16 20 20 C 1.38771 * 120.66658 * 359.97174 * 19 18 17 21 21 C 1.37845 * 120.45383 * 0.02562 * 20 19 18 22 22 C 1.38835 * 119.69154 * 0.04147 * 21 20 19 23 23 N 1.36038 * 124.94598 * 359.72301 * 15 14 13 24 24 H 0.96996 * 126.34896 * 0.02562 * 23 15 14 25 25 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 28 28 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 29 29 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 30 30 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 31 31 H 1.09002 * 114.16514 * 272.37172 * 12 11 10 32 32 H 1.09006 * 109.47029 * 300.00104 * 14 13 12 33 33 H 1.09002 * 109.46894 * 59.99885 * 14 13 12 34 34 H 1.07998 * 120.05962 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.66316 * 179.97438 * 19 18 17 36 36 H 1.08004 * 119.77140 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.16072 * 180.02562 * 21 20 19 38 38 H 1.09000 * 113.47556 * 253.46531 * 25 10 9 39 39 H 1.08995 * 113.47619 * 23.88291 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 1.7491 -6.4380 -1.7035 14 6 2.5901 -7.4751 -2.2127 15 6 1.7842 -8.3820 -3.1066 16 7 2.2528 -9.4248 -3.7276 17 6 1.2608 -10.0136 -4.4439 18 6 1.2075 -11.1363 -5.2742 19 6 0.0294 -11.4864 -5.8707 20 6 -1.1201 -10.7379 -5.6608 21 6 -1.0911 -9.6266 -4.8457 22 6 0.0974 -9.2547 -4.2321 23 7 0.4593 -8.2331 -3.3770 24 1 -0.1225 -7.5365 -3.0348 25 6 1.5184 -4.8986 0.2386 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6240 -2.5568 -0.8903 29 1 1.6756 -3.8466 -2.0765 30 1 3.4598 -3.7930 -1.7440 31 1 3.3715 -5.8925 -0.4639 32 1 3.4065 -7.0332 -2.7840 33 1 2.9980 -8.0523 -1.3829 34 1 2.0958 -11.7267 -5.4435 35 1 -0.0076 -12.3545 -6.5121 36 1 -2.0439 -11.0281 -6.1394 37 1 -1.9887 -9.0478 -4.6853 38 1 1.6915 -5.3047 1.2352 39 1 0.4629 -4.8828 -0.0327 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205818082.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:04 Heat of formation + Delta-G solvation = 66.243255 kcal Electronic energy + Delta-G solvation = -21178.592044 eV Core-core repulsion = 17895.224315 eV Total energy + Delta-G solvation = -3283.367729 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.31045 -39.73236 -37.73635 -36.66885 -33.32146 -32.91968 -30.65873 -30.15269 -29.14413 -27.02915 -25.52676 -24.98188 -22.64398 -22.29847 -21.64723 -21.08754 -19.58478 -18.07647 -17.65964 -16.71036 -16.22042 -16.14239 -15.94901 -15.15773 -14.91574 -14.51969 -14.45638 -14.13718 -13.98807 -13.57863 -13.24356 -12.35214 -12.25651 -12.16174 -12.03334 -11.92657 -11.74591 -11.41214 -11.32653 -10.95031 -10.84842 -10.63417 -10.28717 -10.19859 -9.84350 -9.44462 -9.30380 -8.57117 -8.48978 -8.31767 -8.03436 -6.08827 -4.10513 0.72973 1.31660 2.54384 2.72412 3.06631 3.30623 3.34343 3.37699 3.66344 4.23587 4.38503 4.43085 4.67882 4.76278 4.83168 4.87341 5.01909 5.15337 5.15754 5.18185 5.24021 5.25987 5.26641 5.51611 5.70904 5.84992 5.94181 6.03074 6.15228 6.19764 6.26064 6.28420 6.30311 6.48887 6.63778 7.05137 7.11471 7.17044 7.56346 7.66496 7.77407 8.02123 8.36955 8.96405 9.53769 11.02233 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.033424 B = 0.002557 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.528266 B =10946.577552 C =11349.064779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.162 3.838 10 N -0.462 5.462 11 C -0.005 4.005 12 C 0.056 3.944 13 O -0.383 6.383 14 C 0.138 3.862 15 C 0.298 3.702 16 N -0.495 5.495 17 C 0.049 3.951 18 C -0.066 4.066 19 C -0.129 4.129 20 C -0.106 4.106 21 C -0.108 4.108 22 C 0.044 3.956 23 N -0.581 5.581 24 H 0.431 0.569 25 C -0.002 4.002 26 H 0.263 0.737 27 H 0.030 0.970 28 H 0.005 0.995 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.309 -21.506 -9.188 23.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.729 3.271 4 H -0.213 1.213 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.036 3.964 10 N -0.187 5.187 11 C -0.134 4.134 12 C -0.002 4.002 13 O -0.301 6.301 14 C 0.060 3.940 15 C 0.031 3.969 16 N -0.217 5.217 17 C -0.070 4.070 18 C -0.085 4.085 19 C -0.150 4.150 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.066 4.066 23 N -0.192 5.192 24 H 0.272 0.728 25 C -0.132 4.132 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.023 0.977 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.099 0.901 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.712 -21.417 -8.762 23.151 hybrid contribution -1.295 1.513 -0.300 2.014 sum -0.583 -19.904 -9.062 21.877 Atomic orbital electron populations 1.69944 1.06100 1.27031 1.50868 1.25015 0.94915 0.99461 0.95328 0.86509 0.79410 0.82478 0.78727 1.21310 1.20086 1.20217 1.21048 0.93584 0.89695 1.50263 0.91841 1.20261 0.90506 0.88798 0.96806 1.68996 1.33773 1.01524 1.14393 1.24270 1.02604 0.92249 0.94319 1.24140 0.96687 0.87924 0.91412 1.87807 1.36870 1.39913 1.65508 1.20763 0.90871 0.87327 0.95079 1.23243 0.81745 0.94755 0.97167 1.70287 1.30254 1.08026 1.13166 1.19055 0.89020 0.97912 1.00967 1.20004 0.98608 0.94422 0.95515 1.20639 0.92341 1.00736 1.01276 1.20877 0.98680 0.94653 0.98354 1.20013 0.94860 0.98794 0.99245 1.18971 0.97417 0.92394 0.97865 1.42984 1.10744 1.25707 1.39715 0.72844 1.24073 0.97948 0.92977 0.98172 0.92785 0.95198 0.97722 0.91025 0.90249 0.87994 0.89310 0.89430 0.85383 0.85397 0.85298 0.85825 0.90056 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.32 9.39 -34.44 -0.32 -14.65 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.16 4.17 4.57 -4.98 -0.02 4.15 16 10 N -0.46 -9.71 6.32 -246.08 -1.55 -11.26 16 11 C 0.00 -0.09 7.55 -7.54 -0.06 -0.15 16 12 C 0.06 0.79 4.65 -26.20 -0.12 0.66 16 13 O -0.38 -4.92 9.83 -35.23 -0.35 -5.27 16 14 C 0.14 1.49 6.40 36.01 0.23 1.72 16 15 C 0.30 3.77 7.91 -154.83 -1.22 2.55 16 16 N -0.49 -6.95 11.27 -8.23 -0.09 -7.04 16 17 C 0.05 0.65 7.23 -84.70 -0.61 0.04 16 18 C -0.07 -0.69 10.05 -39.61 -0.40 -1.09 16 19 C -0.13 -1.09 9.96 -39.97 -0.40 -1.49 16 20 C -0.11 -0.88 10.03 -39.53 -0.40 -1.27 16 21 C -0.11 -1.06 10.07 -39.50 -0.40 -1.46 16 22 C 0.04 0.54 7.31 -83.99 -0.61 -0.07 16 23 N -0.58 -6.91 6.05 -8.00 -0.05 -6.95 16 24 H 0.43 4.51 8.54 -40.82 -0.35 4.16 16 25 C 0.00 -0.04 7.52 -7.53 -0.06 -0.10 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.03 0.82 8.08 -51.92 -0.42 0.40 16 28 H 0.00 0.13 7.30 -51.93 -0.38 -0.25 16 29 H 0.07 1.36 7.42 -51.93 -0.39 0.97 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.10 1.22 7.88 -51.93 -0.41 0.81 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.20 7.91 -51.93 -0.41 0.79 16 LS Contribution 333.78 15.07 5.03 5.03 Total: -1.00 -32.37 333.78 -11.07 -43.43 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.28 Total: 1.06 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -4.49 Total: -9.71 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.96 Total: -51.15 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.35 Total: -5.27 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.37 -11.07 -43.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205818082.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.676 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds