Wall clock time and date at job start Tue Mar 31 2020 06:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42895 * 114.17025 * 139.67367 * 12 11 10 14 14 C 1.42899 * 114.00481 * 116.15468 * 13 12 11 15 15 C 1.50701 * 109.47741 * 179.97438 * 14 13 12 16 16 N 1.30104 * 124.95136 * 180.02562 * 15 14 13 17 17 C 1.35785 * 109.64299 * 179.97438 * 16 15 14 18 18 C 1.39740 * 133.60563 * 180.02562 * 17 16 15 19 19 C 1.36610 * 119.88819 * 179.97438 * 18 17 16 20 20 C 1.38771 * 120.66658 * 359.97174 * 19 18 17 21 21 C 1.37845 * 120.45383 * 0.02562 * 20 19 18 22 22 C 1.38835 * 119.69154 * 0.04147 * 21 20 19 23 23 N 1.36038 * 124.94598 * 359.72301 * 15 14 13 24 24 H 0.96996 * 126.34896 * 0.02562 * 23 15 14 25 25 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 28 28 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 29 29 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 30 30 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 31 31 H 1.09002 * 114.16514 * 272.37172 * 12 11 10 32 32 H 1.09006 * 109.47029 * 300.00104 * 14 13 12 33 33 H 1.09002 * 109.46894 * 59.99885 * 14 13 12 34 34 H 1.07998 * 120.05962 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.66316 * 179.97438 * 19 18 17 36 36 H 1.08004 * 119.77140 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.16072 * 180.02562 * 21 20 19 38 38 H 1.09000 * 113.47556 * 253.46531 * 25 10 9 39 39 H 1.08995 * 113.47619 * 23.88291 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 1.7491 -6.4380 -1.7035 14 6 2.5901 -7.4751 -2.2127 15 6 1.7842 -8.3820 -3.1066 16 7 2.2528 -9.4248 -3.7276 17 6 1.2608 -10.0136 -4.4439 18 6 1.2075 -11.1363 -5.2742 19 6 0.0294 -11.4864 -5.8707 20 6 -1.1201 -10.7379 -5.6608 21 6 -1.0911 -9.6266 -4.8457 22 6 0.0974 -9.2547 -4.2321 23 7 0.4593 -8.2331 -3.3770 24 1 -0.1225 -7.5365 -3.0348 25 6 1.5184 -4.8986 0.2386 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6240 -2.5568 -0.8903 29 1 1.6756 -3.8466 -2.0765 30 1 3.4598 -3.7930 -1.7440 31 1 3.3715 -5.8925 -0.4639 32 1 3.4065 -7.0332 -2.7840 33 1 2.9980 -8.0523 -1.3829 34 1 2.0958 -11.7267 -5.4435 35 1 -0.0076 -12.3545 -6.5121 36 1 -2.0439 -11.0281 -6.1394 37 1 -1.9887 -9.0478 -4.6853 38 1 1.6915 -5.3047 1.2352 39 1 0.4629 -4.8828 -0.0327 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205818082.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:03 Heat of formation + Delta-G solvation = 43.093938 kcal Electronic energy + Delta-G solvation = -21179.595874 eV Core-core repulsion = 17895.224315 eV Total energy + Delta-G solvation = -3284.371559 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.15458 -41.10885 -38.61363 -37.72321 -35.02856 -34.17805 -31.74825 -30.91379 -30.73580 -28.02091 -27.04104 -26.63401 -23.58785 -23.38581 -22.99239 -21.99623 -20.95307 -18.92935 -18.75540 -18.38164 -17.54203 -17.12154 -17.03508 -16.46072 -16.16180 -16.01246 -15.38299 -15.09625 -15.00862 -14.83254 -14.58150 -14.11513 -13.71525 -13.40342 -13.12686 -12.91753 -12.83908 -12.73417 -12.51075 -12.47666 -12.27620 -12.10881 -11.76362 -11.65684 -11.25184 -11.08126 -10.64820 -10.59223 -9.76255 -9.36052 -9.12408 -8.25635 -6.36297 -0.04630 0.55199 1.39144 1.42481 1.50628 1.68250 1.88509 2.06777 2.38107 2.88996 3.06740 3.31345 3.35769 3.46606 3.59743 3.97541 4.11986 4.18834 4.24948 4.29550 4.34952 4.44975 4.50108 4.50455 4.51240 4.64708 4.71378 4.84114 4.86829 4.92650 5.02854 5.13414 5.41770 5.53735 5.54081 5.57587 5.72918 5.91967 6.02210 6.06103 6.32218 6.37811 6.77753 6.77911 7.33432 8.85495 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.033424 B = 0.002557 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.528266 B =10946.577552 C =11349.064779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.282 1.282 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.178 3.822 10 N -0.480 5.480 11 C -0.014 4.014 12 C 0.092 3.908 13 O -0.389 6.389 14 C 0.139 3.861 15 C 0.285 3.715 16 N -0.520 5.520 17 C 0.014 3.986 18 C -0.083 4.083 19 C -0.121 4.121 20 C -0.099 4.099 21 C -0.121 4.121 22 C 0.025 3.975 23 N -0.583 5.583 24 H 0.434 0.566 25 C -0.008 4.008 26 H 0.266 0.734 27 H 0.002 0.998 28 H -0.021 1.021 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.137 0.863 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.137 0.863 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.140 0.860 38 H 0.101 0.899 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 -22.703 -9.952 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.207 1.207 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.080 0.920 9 C 0.051 3.949 10 N -0.203 5.203 11 C -0.143 4.143 12 C 0.034 3.966 13 O -0.306 6.306 14 C 0.062 3.938 15 C 0.018 3.982 16 N -0.243 5.243 17 C -0.104 4.104 18 C -0.103 4.103 19 C -0.141 4.141 20 C -0.118 4.118 21 C -0.142 4.142 22 C -0.086 4.086 23 N -0.194 5.194 24 H 0.275 0.725 25 C -0.137 4.137 26 H 0.074 0.926 27 H 0.020 0.980 28 H -0.004 1.004 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.154 0.846 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.155 0.845 35 H 0.179 0.821 36 H 0.180 0.820 37 H 0.158 0.842 38 H 0.119 0.881 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.359 -22.641 -9.533 24.604 hybrid contribution -1.570 1.739 -0.148 2.348 sum -0.212 -20.903 -9.681 23.037 Atomic orbital electron populations 1.70072 1.07751 1.28129 1.51554 1.25968 0.95821 1.03393 0.94628 0.85395 0.78155 0.77633 0.79212 1.20696 1.19160 1.19217 1.21408 0.93696 0.91128 1.50422 0.92027 1.19903 0.90544 0.90360 0.94143 1.68865 1.32876 1.01837 1.16763 1.24327 1.02271 0.95192 0.92499 1.23791 0.96999 0.86404 0.89436 1.87788 1.37404 1.40170 1.65277 1.20953 0.90401 0.86759 0.95733 1.23515 0.82181 0.94972 0.97552 1.70217 1.31182 1.08828 1.14052 1.19518 0.89357 0.99283 1.02213 1.20310 1.00051 0.94163 0.95759 1.21067 0.91435 1.01240 1.00392 1.21351 0.99954 0.93456 0.97038 1.20375 0.94702 0.99693 0.99434 1.19345 0.98175 0.92564 0.98467 1.43005 1.10692 1.25872 1.39836 0.72511 1.24140 0.97724 0.91362 1.00450 0.92559 0.97996 1.00357 0.92951 0.89311 0.84552 0.88005 0.87222 0.84517 0.82139 0.81998 0.84242 0.88107 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.53 -30.42 9.39 25.60 0.24 -30.18 16 8 H 0.06 3.49 7.81 -2.91 -0.02 3.46 16 9 C 0.18 9.50 4.57 85.55 0.39 9.89 16 10 N -0.48 -20.31 6.32 -932.86 -5.89 -26.20 16 11 C -0.01 -0.48 7.55 83.58 0.63 0.15 16 12 C 0.09 2.41 4.65 30.94 0.14 2.56 16 13 O -0.39 -9.47 9.83 -148.98 -1.46 -10.93 16 14 C 0.14 2.79 6.40 71.24 0.46 3.24 16 15 C 0.29 7.13 7.91 137.92 1.09 8.22 16 16 N -0.52 -14.60 11.27 -179.96 -2.03 -16.63 16 17 C 0.01 0.38 7.23 39.45 0.29 0.66 16 18 C -0.08 -1.68 10.05 22.25 0.22 -1.45 16 19 C -0.12 -1.74 9.96 22.02 0.22 -1.52 16 20 C -0.10 -1.37 10.03 22.30 0.22 -1.15 16 21 C -0.12 -2.22 10.07 22.32 0.22 -1.99 16 22 C 0.02 0.60 7.31 38.86 0.28 0.88 16 23 N -0.58 -13.91 6.05 -179.23 -1.08 -14.99 16 24 H 0.43 9.23 8.54 -92.71 -0.79 8.44 16 25 C -0.01 -0.25 7.52 83.58 0.63 0.37 16 26 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 27 H 0.00 0.11 8.08 -2.38 -0.02 0.09 16 28 H -0.02 -1.22 7.30 -2.39 -0.02 -1.24 16 29 H 0.05 2.05 7.42 -2.39 -0.02 2.03 16 30 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.14 2.75 7.88 -2.39 -0.02 2.73 16 32 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 35 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 37 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 38 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.06 2.04 7.91 -2.39 -0.02 2.02 16 Total: -1.00 -72.15 333.78 -2.38 -74.53 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.27 Total: 13.88 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 5.50 Total: -9.86 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -8.72 Total: -114.06 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -1.46 Total: -10.93 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -72.15 -2.38 -74.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205818082.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.627 kcal (2) G-P(sol) polarization free energy of solvation -72.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds