Wall clock time and date at job start Tue Mar 31 2020 07:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46999 * 2 1 4 4 H 1.08991 * 109.47162 * 54.99491 * 3 2 1 5 5 C 1.50696 * 109.47113 * 174.99902 * 3 2 1 6 6 H 1.07999 * 120.00072 * 119.99882 * 5 3 2 7 7 C 1.37872 * 119.99982 * 299.99922 * 5 3 2 8 8 N 1.31515 * 120.00138 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00191 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47493 * 59.99538 * 9 7 5 11 11 H 1.48504 * 109.47149 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46854 * 299.99398 * 9 7 5 13 13 N 1.46501 * 109.46821 * 294.99869 * 3 2 1 14 14 C 1.34775 * 120.00398 * 85.00030 * 13 3 2 15 15 O 1.21596 * 119.99668 * 359.97438 * 14 13 3 16 16 N 1.34776 * 120.00364 * 179.97438 * 14 13 3 17 17 C 1.40172 * 120.00269 * 185.31730 * 16 14 13 18 18 C 1.39395 * 119.88446 * 33.55731 * 17 16 14 19 19 C 1.37646 * 120.60860 * 180.28003 * 18 17 16 20 20 C 1.39121 * 120.01819 * 359.73351 * 19 18 17 21 21 N 1.37888 * 133.34259 * 180.02562 * 20 19 18 22 22 H 0.97004 * 125.06765 * 0.02562 * 21 20 19 23 23 C 1.36798 * 109.85602 * 179.97438 * 21 20 19 24 24 C 1.34237 * 109.93913 * 359.97438 * 23 21 20 25 25 C 1.40631 * 119.53908 * 359.97438 * 20 19 18 26 26 C 1.38182 * 119.88220 * 213.28984 * 17 16 14 27 27 H 1.08993 * 109.47320 * 300.00531 * 1 2 3 28 28 H 1.09005 * 109.46974 * 60.00277 * 1 2 3 29 29 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46981 * 239.99893 * 2 1 3 31 31 H 1.08996 * 109.46793 * 119.99589 * 2 1 3 32 32 H 0.97001 * 120.00840 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99827 * 264.99956 * 13 3 2 34 34 H 0.97002 * 119.99809 * 5.32141 * 16 14 13 35 35 H 1.08002 * 119.69372 * 0.02562 * 18 17 16 36 36 H 1.08003 * 119.99381 * 179.74441 * 19 18 17 37 37 H 1.08000 * 125.03167 * 179.97438 * 23 21 20 38 38 H 1.08002 * 126.48635 * 180.02562 * 24 23 21 39 39 H 1.08000 * 120.20633 * 359.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1733 9 14 6.0049 0.8814 1.3819 10 1 6.4995 2.2816 1.3822 11 1 6.3977 0.2179 2.6511 12 1 6.5975 0.1473 0.2351 13 7 1.6524 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3416 2.6318 -0.4322 16 7 0.0788 3.2673 -2.5186 17 6 -1.1409 3.9529 -2.6025 18 6 -1.6420 4.6182 -1.4847 19 6 -2.8409 5.2913 -1.5488 20 6 -3.5620 5.3169 -2.7382 21 7 -4.7608 5.8904 -3.1060 22 1 -5.3308 6.4141 -2.5213 23 6 -5.0258 5.6117 -4.4188 24 6 -4.0361 4.8680 -4.9377 25 6 -3.0568 4.6521 -3.8698 26 6 -1.8396 3.9717 -3.7945 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8291 -0.0609 2.9500 33 1 2.2720 2.1231 -1.9978 34 1 0.6663 3.2266 -3.2894 35 1 -1.0864 4.6018 -0.5587 36 1 -3.2219 5.8000 -0.6755 37 1 -5.9017 5.9412 -4.9580 38 1 -3.9736 4.4988 -5.9508 39 1 -1.4486 3.4601 -4.6616 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157331201.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:45 Heat of formation + Delta-G solvation = 29.451568 kcal Electronic energy + Delta-G solvation = -22035.865817 eV Core-core repulsion = 18750.902680 eV Total energy + Delta-G solvation = -3284.963137 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13520 -39.69661 -37.04830 -35.01052 -33.66466 -32.28772 -31.77441 -30.75191 -28.66874 -28.18874 -26.68488 -23.19898 -22.73173 -22.01849 -20.83832 -20.12045 -19.47330 -18.31017 -17.69169 -17.09480 -16.11248 -15.66006 -15.17112 -14.64387 -14.37331 -14.14573 -13.98154 -13.68017 -13.29781 -13.12956 -12.67546 -12.52456 -12.46094 -12.38398 -11.64297 -11.44274 -11.22340 -10.97188 -10.84392 -10.80360 -10.30391 -10.14210 -9.82173 -9.59505 -9.40956 -9.27430 -9.01488 -8.48455 -7.86718 -7.78633 -7.29824 -6.10836 -4.20154 1.22814 1.75781 2.74586 3.11674 3.26478 3.29447 3.32106 3.37500 3.79273 4.20859 4.33821 4.77337 4.85827 5.03135 5.20757 5.21974 5.39585 5.53276 5.61677 5.74514 5.97711 6.21558 6.31016 6.45135 6.52839 6.57742 6.69553 6.74636 6.80497 6.93904 7.08033 7.18463 7.37948 7.41656 7.43197 7.51512 7.52951 7.66540 7.90414 8.03818 8.21416 8.76817 8.89989 9.31649 9.49262 10.94470 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.038816 B = 0.003207 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.187337 B = 8730.066412 C = 8831.878484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.720 5.720 14 C 0.693 3.307 15 O -0.577 6.577 16 N -0.697 5.697 17 C 0.164 3.836 18 C -0.091 4.091 19 C -0.115 4.115 20 C 0.073 3.927 21 N -0.600 5.600 22 H 0.412 0.588 23 C 0.046 3.954 24 C -0.210 4.210 25 C -0.089 4.089 26 C -0.119 4.119 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.020 0.980 30 H 0.030 0.970 31 H 0.099 0.901 32 H 0.265 0.735 33 H 0.385 0.615 34 H 0.400 0.600 35 H 0.143 0.857 36 H 0.120 0.880 37 H 0.166 0.834 38 H 0.143 0.857 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.704 9.425 -12.689 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.371 5.371 14 C 0.393 3.607 15 O -0.455 6.455 16 N -0.345 5.345 17 C 0.068 3.932 18 C -0.112 4.112 19 C -0.136 4.136 20 C -0.033 4.033 21 N -0.203 5.203 22 H 0.248 0.752 23 C -0.080 4.080 24 C -0.235 4.235 25 C -0.094 4.094 26 C -0.141 4.141 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.217 0.783 34 H 0.235 0.765 35 H 0.161 0.839 36 H 0.138 0.862 37 H 0.183 0.817 38 H 0.160 0.840 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.369 9.294 -11.480 19.923 hybrid contribution 1.250 0.105 -0.426 1.325 sum -12.119 9.399 -11.906 19.416 Atomic orbital electron populations 1.21817 0.98241 0.97870 1.01360 1.21958 0.92711 0.99910 1.02170 1.18697 0.93904 0.88881 0.80001 0.93232 1.21191 0.90708 1.39096 1.06295 0.92156 1.24871 0.98564 0.94825 0.95376 1.69886 1.35200 1.37518 1.09326 0.86513 0.84879 0.78286 0.77431 1.20212 1.21149 1.20189 1.45827 1.13105 1.58944 1.19228 1.16107 0.83515 0.78676 0.82372 1.90898 1.51713 1.64469 1.38387 1.42852 1.20219 1.56517 1.14930 1.17216 0.87008 0.94705 0.94281 1.20977 0.95936 0.95193 0.99087 1.19874 0.95436 1.03367 0.94903 1.18251 0.88468 1.00665 0.95903 1.41759 1.19473 1.48107 1.10998 0.75161 1.21720 1.00590 1.01445 0.84271 1.21615 0.95765 1.07206 0.98961 1.18851 0.95556 1.01532 0.93496 1.20075 0.93840 1.02712 0.97502 0.93165 0.94196 0.96059 0.95124 0.88324 0.92499 0.78281 0.76514 0.83912 0.86206 0.81686 0.83969 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.14 5.45 -26.73 -0.15 -3.29 16 3 C 0.29 7.17 2.24 -69.08 -0.15 7.02 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.60 11.29 55.43 0.63 -23.98 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.72 -14.77 5.03 -59.81 -0.30 -15.07 16 14 C 0.69 13.88 6.86 -86.92 -0.60 13.28 16 15 O -0.58 -13.47 11.17 5.28 0.06 -13.41 16 16 N -0.70 -10.99 5.35 -14.20 -0.08 -11.07 16 17 C 0.16 2.60 6.27 -83.63 -0.52 2.08 16 18 C -0.09 -1.49 8.62 -39.37 -0.34 -1.83 16 19 C -0.11 -1.60 10.06 -39.47 -0.40 -2.00 16 20 C 0.07 0.97 7.27 -83.91 -0.61 0.36 16 21 N -0.60 -5.80 6.08 -10.62 -0.06 -5.87 16 22 H 0.41 2.70 8.96 -40.82 -0.37 2.33 16 23 C 0.05 0.41 11.81 -16.75 -0.20 0.21 16 24 C -0.21 -2.26 11.08 -37.67 -0.42 -2.68 16 25 C -0.09 -1.22 6.37 -105.14 -0.67 -1.88 16 26 C -0.12 -1.66 10.01 -39.08 -0.39 -2.05 16 27 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 28 H 0.04 0.90 5.64 -51.93 -0.29 0.61 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.39 6.80 8.56 -40.82 -0.35 6.45 16 34 H 0.40 4.94 8.83 -40.82 -0.36 4.58 16 35 H 0.14 2.62 6.41 -52.49 -0.34 2.29 16 36 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 37 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 322.69 15.07 4.86 4.86 Total: -1.00 -31.86 322.69 -9.33 -41.19 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -4.89 Total: 14.02 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -4.52 Total: -6.16 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.18 Total: -55.98 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.06 Total: -13.41 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.86 -9.33 -41.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157331201.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.642 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds